IVF0020019 (gene) Melon (IVF77) v1

Overview


Name	IVF0020019
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein ROOT HAIR DEFECTIVE 3-like
Location	chr01: 13297058 .. 13297326 (+)
RNA-Seq Expression	IVF0020019
Synteny	IVF0020019

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTAATTAAAGTATGTTTGTTTTGAAGTTTACTTGTTTCTTGTTTTTTCTTAATTAAGGAGTAATCCAGGTGTTTCTATTGCTTCTTTAATAGGGCAAGGCGAATGACTCCCAACAATGTTATGGCGGTGGTGAAGGTCCATTGTTTAATGCACTGGAGGTTGATAACAAACTGGACGATGCATTCATGGATGTTCCTGCTCCGGACATTGATGACCAGCACGTTGATGAGGAGACGAGAACATCCATCAATGAATACACCTGA

mRNA sequence

ATGGTATTAATTAAAGGCAAGGCGAATGACTCCCAACAATGTTATGGCGGTGGTGAAGGTCCATTGTTTAATGCACTGGAGGTTGATAACAAACTGGACGATGCATTCATGGATGTTCCTGCTCCGGACATTGATGACCAGCACGTTGATGAGGAGACGAGAACATCCATCAATGAATACACCTGA

Coding sequence (CDS)

ATGGTATTAATTAAAGGCAAGGCGAATGACTCCCAACAATGTTATGGCGGTGGTGAAGGTCCATTGTTTAATGCACTGGAGGTTGATAACAAACTGGACGATGCATTCATGGATGTTCCTGCTCCGGACATTGATGACCAGCACGTTGATGAGGAGACGAGAACATCCATCAATGAATACACCTGA

Protein sequence

MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINEYT

Homology

[Close]

BLAST of IVF0020019 vs. ExPASy TrEMBL
Match: A0A0A0M3R6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701370 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.8e-17
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 60
           MVL+K KA DSQQCYGGGEG  FNA EV+N++DD FMDVP P+IDDQHVD++TRTSI+E
Sbjct: 91  MVLVKDKAVDSQQCYGGGEGLSFNASEVENRVDDVFMDVPTPNIDDQHVDDKTRTSISE 149

[Close]

BLAST of IVF0020019 vs. ExPASy TrEMBL
Match: A0A1S3BN49 (uncharacterized protein LOC103491868 OS=Cucumis melo OX=3656 GN=LOC103491868 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 60
           M+L+KGKA DSQQCYGGGEG  FNA +V N +DD F+D  AP ID+Q ++EE  TSI+E
Sbjct: 42  MLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDDVFVDFSAPIIDNQTINEEMGTSISE 100

[Close]

BLAST of IVF0020019 vs. ExPASy TrEMBL
Match: A0A5A7ST87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00570 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 60
          M L+KGKA DSQQCY  GEG  FNA EVD  +DD F+D+PA  IDDQ +D+E  T I+E
Sbjct: 17 MTLLKGKAVDSQQCYSSGEGTSFNASEVDTLVDDVFIDIPASIIDDQLIDKEKGTYISE 75

[Close]

BLAST of IVF0020019 vs. ExPASy TrEMBL
Match: A0A5D3CAX9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00230 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 60
          M L+KGKA DSQQCY  GEG  FNA EVD  +DD F+D+PA  IDDQ +D+E  T I+E
Sbjct: 17 MTLLKGKAVDSQQCYSSGEGTSFNASEVDTLVDDVFIDIPASIIDDQLIDKEKGTYISE 75

[Close]

BLAST of IVF0020019 vs. ExPASy TrEMBL
Match: A0A5D3DKS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00680 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 60
          M L+KGKA D +QCYG GEG  FNA E +  +DD FM++PAP ID Q  +EE RTSI+E
Sbjct: 24 MTLVKGKAVDFKQCYGSGEGTSFNAPEANTLVDDEFMNIPAPIIDAQPTNEEARTSISE 82

[Close]

BLAST of IVF0020019 vs. NCBI nr
Match: KAE8653658.1 (hypothetical protein Csa_023635, partial [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.83e-23
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 59
           MVL+K KA DSQQCYGGGEG  FNA EV+N++DD FMDVP P+IDDQHVD++TRTSI+E
Sbjct: 90  MVLVKDKAVDSQQCYGGGEGLSFNASEVENRVDDVFMDVPTPNIDDQHVDDKTRTSISE 148

[Close]

BLAST of IVF0020019 vs. NCBI nr
Match: TYK07506.1 (uncharacterized protein E5676_scaffold1702G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.79e-15
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 59
          M L+KGKA DSQQCY  GEG  FNA EVD  +DD F+D+PA  IDDQ +D+E  T I+E
Sbjct: 17 MTLLKGKAVDSQQCYSSGEGTSFNASEVDTLVDDVFIDIPASIIDDQLIDKEKGTYISE 75

[Close]

BLAST of IVF0020019 vs. NCBI nr
Match: KAA0033206.1 (uncharacterized protein E6C27_scaffold1276G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.88e-15
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 59
          M L+KGKA DSQQCY  GEG  FNA EVD  +DD F+D+PA  IDDQ +D+E  T I+E
Sbjct: 17 MTLLKGKAVDSQQCYSSGEGTSFNASEVDTLVDDVFIDIPASIIDDQLIDKEKGTYISE 75

[Close]

BLAST of IVF0020019 vs. NCBI nr
Match: XP_008450207.1 (PREDICTED: uncharacterized protein LOC103491868 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 4.94e-15
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1   MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 59
           M+L+KGKA DSQQCYGGGEG  FNA +V N +DD F+D  AP ID+Q ++EE  TSI+E
Sbjct: 42  MLLVKGKAVDSQQCYGGGEGTSFNASKVGNLVDDVFVDFSAPIIDNQTINEEMGTSISE 100

[Close]

BLAST of IVF0020019 vs. NCBI nr
Match: TYK23889.1 (uncharacterized protein E5676_scaffold419G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 4.12e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1  MVLIKGKANDSQQCYGGGEGPLFNALEVDNKLDDAFMDVPAPDIDDQHVDEETRTSINE 59
          M L+KGKA D +QCYG GEG  FNA E +  +DD FM++PAP ID Q  +EE RTSI+E
Sbjct: 24 MTLVKGKAVDFKQCYGSGEGTSFNAPEANTLVDDEFMNIPAPIIDAQPTNEEARTSISE 82

The following BLAST results are available for this feature:

BLAST of IVF0020019 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0020019 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3R6	4.8e-17	74.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701370 PE=4 SV=1	[more]
A0A1S3BN49	2.3e-11	62.71	uncharacterized protein LOC103491868 OS=Cucumis melo OX=3656 GN=LOC103491868 PE=...	[more]
A0A5A7ST87	1.1e-10	61.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CAX9	1.1e-10	61.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DKS2	3.3e-10	59.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0020019 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653658.1	2.83e-23	74.58	hypothetical protein Csa_023635, partial [Cucumis sativus]	[more]
TYK07506.1	3.79e-15	61.02	uncharacterized protein E5676_scaffold1702G00230 [Cucumis melo var. makuwa]	[more]
KAA0033206.1	3.88e-15	61.02	uncharacterized protein E6C27_scaffold1276G00570 [Cucumis melo var. makuwa]	[more]
XP_008450207.1	4.94e-15	62.71	PREDICTED: uncharacterized protein LOC103491868 [Cucumis melo]	[more]
TYK23889.1	4.12e-14	59.32	uncharacterized protein E5676_scaffold419G00680 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0020019 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0020019.1	IVF0020019.1	mRNA