IVF0019988 (gene) Melon (IVF77) v1

Overview


Name	IVF0019988
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	SHSP domain-containing protein
Location	chr05: 22293459 .. 22293790 (+)
RNA-Seq Expression	IVF0019988
Synteny	IVF0019988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGGTTTACGAGATTGAGGAGTAGTTTGGTTTGAAGGTATCGTTTTTGATGTCGTTGTCGAGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA

mRNA sequence

ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA

Coding sequence (CDS)

ATGGGTCTCTTGGAGATTGCTGGCATTGGAGGGCGTCGGTGGGAATGTCACTATGAGAAGCTAAACAGTAGTGGAGGTAGTAATAACAGAGTAGTGGTTATAATAATGCGGAGACGTCGATGGATTAAGAAGATGTTAAAGAGAGGAATGAAGGGTTTTCGATTGTATCGAAGAATAAGAGAGATTGTGAATAGAATGAAGTTTGTTGAAGATGTATGCCCTAACATCATCTTCTCTACTCAATGGGGACTTCCTGTTCTATCTTATATATGA

Protein sequence

MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI

Homology

[Close]

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A5D3BCS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00490 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 90/110 (81.82%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY---- 60
           MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY    
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  ----------------RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 91
                           RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

[Close]

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A0A0LJ29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 79/110 (71.82%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLY---- 60
           M LLEIAGIGGRRWECHYEKLN SGGSN    V++MRRRRW+KKMLKRGMKGFRLY    
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLN-SGGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60

Query: 61  ----------------RRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 91
                           RRIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A7J7H3I9 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 11  GRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR---------- 70
           G RW   Y++L     SN+R  V +  RRRW+ +M  + +KGFRL +  R          
Sbjct: 8   GGRWTTRYKRLT----SNDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKRLNWKAFSIVM 67

Query: 71  ----------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
                     E+VNRMK  +++CP IIFS QWGLPVLS+
Sbjct: 68  LPRRMAQIYAEVVNRMK-TDEICPAIIFSGQWGLPVLSH 100

[Close]

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A6A4KLK9 (SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21367 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 4   LEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR------ 63
           +EI+ + G RW   YEKL  +G  + +       RRRW  KM  R  +G RL R      
Sbjct: 128 IEISDVVGGRWRIRYEKL--TGIDHEKAAA--RPRRRWAMKMNGR-FRGIRLPRCRKLNW 187

Query: 64  ----------RIR----EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
                     RI     EI+NRMK ++D+CP I+FS  WGLPVLS+
Sbjct: 188 RAFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

[Close]

BLAST of IVF0019988 vs. ExPASy TrEMBL
Match: A0A061F3B0 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 37/99 (37.37%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 9  IGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR-------- 68
          +GG    C YEKL + G +          RRRW+KKM   G+KG RL R  +        
Sbjct: 10 LGGHPVPCRYEKLRNVGDAR--------PRRRWVKKM-SGGLKGLRLSRSRKLKTLCSVV 69

Query: 69 ----------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 90
                    +I +R+K    +CPNIIF+T WGLP LS+
Sbjct: 70 FANRITRIYADIAHRLKMDGTLCPNIIFATHWGLPTLSH 99

[Close]

BLAST of IVF0019988 vs. NCBI nr
Match: KAA0056096.1 (hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ96421.1 hypothetical protein E5676_scaffold546G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (441), Expect = 2.17e-54
Identity = 90/110 (81.82%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
           MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR   
Sbjct: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRFTR 60

Query: 61  -----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 90
                            RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LRSSFGLKVSFLMSLSRRIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 110

[Close]

BLAST of IVF0019988 vs. NCBI nr
Match: KGN61039.1 (hypothetical protein Csa_021124 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 6.36e-44
Identity = 79/110 (71.82%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
           M LLEIAGIGGRRWECHYEKLNS GGSN    V++MRRRRW+KKMLKRGMKGFRLYR   
Sbjct: 1   MSLLEIAGIGGRRWECHYEKLNS-GGSNR---VVVMRRRRWVKKMLKRGMKGFRLYRFTR 60

Query: 61  -----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSYI 90
                            RIREIV+RMK VEDVCPNIIFSTQWGLPVLSYI
Sbjct: 61  LKSSFGLKVSFLMSLSRRIREIVSRMKVVEDVCPNIIFSTQWGLPVLSYI 106

[Close]

BLAST of IVF0019988 vs. NCBI nr
Match: KAG6599155.1 (Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (255), Expect = 3.93e-23
Identity = 61/108 (56.48%), Postives = 66/108 (61.11%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR--- 60
           MGLLE AGIGGRRW   YEKL+           ++  RRRW+KK LKRG KGFRLYR   
Sbjct: 452 MGLLETAGIGGRRWN-QYEKLHCEDND------VVKCRRRWMKKTLKRGKKGFRLYRLTR 511

Query: 61  ----------------RIREIVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
                           RIREIVNRMK VEDVC N+IF TQWGLP LSY
Sbjct: 512 SRSFCLKVSFLVLMSRRIREIVNRMK-VEDVCANVIFFTQWGLPTLSY 551

[Close]

BLAST of IVF0019988 vs. NCBI nr
Match: KAF5946811.1 (hypothetical protein HYC85_017039 [Camellia sinensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.14e-09
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 1   MGLLEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYRRIR 60
           MG  ++  +GGR W   Y++L S    N+R  V +  RRRW+ +M  + +KGFRL +  R
Sbjct: 1   MGFEDV--VGGR-WTTRYKRLTS----NDREKVAVRPRRRWVTRMNGK-LKGFRLPQSKR 60

Query: 61  --------------------EIVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
                               E+VNRMK  +++CP IIFS QWGLPVLS+
Sbjct: 61  LNWKAFSIVMLPRRMAQIYAEVVNRMK-TDEICPAIIFSGQWGLPVLSH 100

[Close]

BLAST of IVF0019988 vs. NCBI nr
Match: KAE9446725.1 (hypothetical protein C3L33_21367, partial [Rhododendron williamsianum])

HSP 1 Score: 61.2 bits (147), Expect = 8.67e-09
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 4   LEIAGIGGRRWECHYEKLNSSGGSNNRVVVIIMRRRRWIKKMLKRGMKGFRLYR------ 63
           +EI+ + G RW   YEKL  +G  + +       RRRW  KM  R  +G RL R      
Sbjct: 128 IEISDVVGGRWRIRYEKL--TGIDHEKAAA--RPRRRWAMKMNGR-FRGIRLPRCRKLNW 187

Query: 64  ----------RIRE----IVNRMKFVEDVCPNIIFSTQWGLPVLSY 89
                     RI E    I+NRMK ++D+CP I+FS  WGLPVLS+
Sbjct: 188 RAFAILMSPKRIAEMYGEIINRMKMMDDICPGIVFSGHWGLPVLSH 228

The following BLAST results are available for this feature:

BLAST of IVF0019988 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0019988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCS3	7.0e-41	81.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJ29	1.2e-32	71.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G035390 PE=4 SV=1	[more]
A0A7J7H3I9	1.1e-06	40.40	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_017039 PE=4 SV=1	[more]
A0A6A4KLK9	1.1e-06	39.62	SHSP domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26292...	[more]
A0A061F3B0	7.3e-06	37.37	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_026865 PE=4 SV=1	[more]

BLAST of IVF0019988 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056096.1	2.17e-54	81.82	hypothetical protein E6C27_scaffold323G00580 [Cucumis melo var. makuwa] >TYJ9642...	[more]
KGN61039.1	6.36e-44	71.82	hypothetical protein Csa_021124 [Cucumis sativus]	[more]
KAG6599155.1	3.93e-23	56.48	Transmembrane protein 184A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF5946811.1	1.14e-09	39.45	hypothetical protein HYC85_017039 [Camellia sinensis]	[more]
KAE9446725.1	8.67e-09	39.62	hypothetical protein C3L33_21367, partial [Rhododendron williamsianum]	[more]

BLAST of IVF0019988 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35123:SF3	OS07G0633900 PROTEIN	coord: 60..89
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 10..57
None	No IPR available	PANTHER	PTHR35123:SF3	OS07G0633900 PROTEIN	coord: 10..57
None	No IPR available	PANTHER	PTHR35123	OS07G0633900 PROTEIN-RELATED	coord: 60..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019988.1	IVF0019988.1	mRNA