IVF0019865 (gene) Melon (IVF77) v1

Overview


Name	IVF0019865
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	KH domain-containing protein
Location	chr04: 32168962 .. 32173822 (-)
RNA-Seq Expression	IVF0019865
Synteny	IVF0019865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTTTGTATAATCCCAACTTCTCTCCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCAGCGGTGATACTGACAGGTATCCTTCCCAGATTCATTGTTTCATTCTACTCCCAACATGCCATCAATTTTTCTTCCCACCTTCTCCCCATCCCCATGTGTGATTATCTTCTTCTGATCTTCTTTAGCCAGTACCTGTCGGAGCTGTGGCCGAGCATCAGAAACTCGGACCCTTCATGCAAATCCTTCCTATTTGTAGCCGACTTTTAAATCAAGGTCTACTTTTCTTTTTCTTTTCTCTTTTACAACTCCCTCTCTCTCACCGCAACTATACTTTCCTATATTTAGATCGCACCATCCAATCTATGCCTGCTGCTTCCTCCTTATAACTTCTTACCGCACCTCTTTTGTTGTTTCTTTTTTCAATTTCTTAATATATATATATATATATCATCATGCTTTTTCCATCTCCAATTTTCCTCCCTTGAGAGTTGGTTCTCCATGAGAACCAGATTGTTGCCATCTCTAAAATCGTCTGCCTTTTTTAAATCTACTAACCGCTGACATATATCTAATCAGAGATTTATAGTTCTAAGTCGATTGTAAGGCCTATTTTAACCACATTACCTATAACTTACATCTCCACCACGCATCAACGCTCTGCTTTATAATCTCAAACTCAAAATGCATCTTATTAATATATCAAGATTCACCTTCAATTTATATTTGGTATTTCAGTTTTTGATTGAAAAAGTTGAAATATTCTTTAACCATTTACTCTGCTTTAGTTGTTAGCGAGTCTTGAGCTAGACTTTGAATACAGCAACAACTTTAAAAGTGTGTCAGGTTTTGCATTTCATCTATTGTTACTTGTTAGATGCTTTAAATAAAAAAAAATTCTTAAAGCATTTATGCAAGTGAGTGTTATTGACTCTAATTCGCCCTTTTTCATAATGTTATGGCTTTAACCATGCTCTCGAGCAGAAAAAGTCATGATAGAAGGCTCAGGCGTTAAATTTAACTACAATCTAGATCAGTTAAAGAGTAGTGGAGAAATAGTGAGAATTATTAAGAATGTAGTTATGTGAATTGTTCACAAGTTTATGGAGTGACTTCAGGGTCTGTGGGTAGTAGTTTCGTAAGACAGTGATATCCTCTTGAAAGGCTATATAACCAATGTAACTTTCTTCTTCTATATTAAAAATAAATTTATTCTTATTATCTTATTTCCAATCTTAAGATGATGGGGTTCCTTTCCATCTCTTCCCAAGAAACTTTCACATCTTTAAAAAAAAATTATTTTCCTTCTCGATCAATTTTCCAATTAGTGATCAAGAAACTTGCTTTCCACAAACTGTTATCTCTTTCAGAAGGACCTCCTCTAACACCGATTCATTAAGCCATTCCAGGAGTCCATTGCATGCCTGTCATTTTAATTTTTTCACTATCACACTCAATCACACTATTTCCTTAAAATATTATTTAATAGTTATTTTCTCACCAAGGAATGAGAAATTATAAAAAAATTTTAAAAATGAGAGTGAGACTTTTTTTGGAAGTCCACTTACCCGTACAATCCCAATTACATATGATAAGAAAGGCATAAATATTAATGAAATACGACGCATGTTGTGCTGACCAGAGCTTCAGACCTCTGCAGCATTCAGTCATCTTACATAGAAATCTAACTAAATCTTCAGAAGCCTACCTAGACAGTAATACATATCAAGTCTTTTCTCAATCGATGGAAAAGTAACCTGGTATGATGTGTTTGACTCTGCTAATCCACTTTTTTACTTTTTCACATTCTAAACTTCGGAACTCTGGGTTTGTTTTACATATGATAAGTTCCTTTATGTGCGGAGATTAATGCAGGTTTTCGGAATGATGTCCGACCAAAGGTTTTTCATATGACAAGTTACTTTATGTGCAGAGATTTTGCGGGTTTCCGGAATGATGTCCAACCAAGGTTTTAGTGAATTTGAGAGATTACGACATAGAAGCCCCAGTCCAATGGCTTCTTCTAACCTTGTGTCAAATATTTCTGGCTCAGGTTTGGCAGCTGGAATGGACTTCCTCAGGAGGTAAGTTTGTTTAGACTGTTTTTCTGGACTTCTCAATTGTGAATTCGTTAGACTCATTTGAACAGATCATCAATTGGAAGATTCGGGTTGCTTCATGTTTGCTTTTTATTTGGTTGAAACTTTTCTAACTTAGAAATTACATGCGAGCTATAATGCTTAATAGCTTTTGATGTTTTAGAGTTATAATAACATACTGTCCCTAACTTATTAAATGCTTGGCTAAGAAAATTTCAATTTTTGGAACTTCCTACAATTATATGATCCTTAGCTTCCTTCTTCTTCTTCCCTCACGGAAGTGGCTGTAACTTAGTTTACATAGGAGTGAATTTGTGTGTGAATCTGTCTAGCCAGATTGGCAGAATTTGCTTCTATGTCCTTTAGTCTAATCCTCTCTAGGCTGTATATTGAACAACCTAGGATTTGGCAGTTTACTATGCAGAGTAGTTCAGCATAACTGCTTTGGGGATTGTGCTCAAGTTGCCGAAACAAAACTTTAATAATTATTAGAAAACTATTTACAAGTTTTTGTTTTCAAAGGAAGAAAAATTGTTGTTCTCCTAAATTGGCACACCCGCACTCACTAGAACAAGCTATAGGAAAGGAAAAAAGAAACCATCTTTAAAAGACAGTTAAATAAATATGTTTTCACTGAACTTTTGTTTTTGATTAAAAAGCAAAAAACAATTTGTAAAATACAAACAGTTCCTCTGTTCCATTTTGCATGTTTCACATTCCTGACCCCCTACATATTAATCATGGGACTGGTTGGATAGCATCTTAAGTGATCAAACTCACAAGTTGTTTAGGAAGTATATCTTATAATTTCTGGACCTAGGATTAAATAAAAAAGGGTTTTGGGACTGGGAGCTAAAAGGGGTATCTATACATAGCAAGTATGAAAGGTTTAAGTATTTGCTCCCTCTGAATTGTATTCAATAAAGTATTTGTTTCCTATGTATGTATAAAATCCATAAGTTGTACTATAATCCTGCTAGCATTCTGCCACTACGTTTTCTTGAATGAGTCATCAGTTACCGATAATGGTGCTTGTTTAAATTTTGAAGTTAAACATCAAAGTTCCCATTGCTCACAAGCATGAAAGAAAAGTATTCCAGCATAATAAACCAATCAATAGAATCACGGCAAAATACCACAGGTTTCACAGTGATGTGGAGTTGGGAAACTTATATCATTTTAATTCTTTAATTCCATATTTTGATGCAGTATGCTTATTATTTCTCTCCATAATCAGAAAAGTTGTTTGAACTTAATATGAAATTGTTATCTTGGGATCGTGGGAAGGTAATAGAAACTTCCATCATGTCTGTAACATTTACCTTGACTTGTAAGCTTTCCAGAAGTTTCCCTTTTGCTATATAGGATGCCTATAACCCAATTTTTTTTAACTTTTATGCCTTAGACAAACTTATTATTTTGAAAGAAAAAAAACAGAGAAAAAAAAATCAATATGACCACTGATGTTACTTTCATTTTTCCTTTTCACAGCCAAGGTTAAGTGGAAATCCTGGAATGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCTAGTTCATTTACTGTAAGAGGATTTTGCGTTTGGAAATTCCAGTGGACACATATCCGAATGTAAATTCAATAAAGAAGTGTCTCTGTATGCGGTTTCTGAAATCCTTTCAGAATGTGGATTATTTAACACTTTAATTTGTCTTGTTCCTTGGATGGCAGTTCAATTTTGTTGGACGACTTCTTGGACCGAGAGGCAATTCTCTGAAGCGGGTAGAAGCTACTACAGGATGTCGTGTGTATATCAGAGGAAAGGGTCAATTAAAGATCCAGAGAAGGTATTTTAGGTGAAATTGCTTGGATGAAACACTTGAGTAAATTGCTCACTCTAAGTGATCACTTAAAATTTTTTCCATTGGGTGTTTCTTATTGTGTTTGATAGTCATATCAGTATCTGCGTATGTTTAATATTGGGCTATCTGGTTATTTATTTCTTTATCTATGACTGTTTTAAATTCTCAAGGAAGAGAAACTCCGAGGAAGACTTGGTTATGAACATCTGAACGAACCACTGCATGTCCTAATTGAGGCTGATTTACCTGCCAATATCATTGATATCAGGCTGAGACAGGCACAAGAAATTATAGAAGAACTACTTAAACCCGTGGTACTGTTTACTTTCCAACCTAATTCTATCAAGTTTAATTTTGTTTATGATGGGATGGGCCCAATAGATGATCCATTATTTGTTGCATTCCATTCCACTTTTAGGTCAATGCATAGATAGTTTCATTATATGCAGTATCTGTTAACAAAAACATGTCCTTGGGTTAAGCTACATGGGTTTAGGTATCCTCGGAAGAAACTAGATATATGAGCATAACTCAAACCCAATTCATGGCTGACGCCTGCAGTCCAAGAAGGGATTTTAGATTCATAGGAGTAGAAGGAACCAGAAGAATGAAAGGGAGATTGGTTGTCTAAACTCTGAAAGATGAAATGCTTTGTCTGTCAGTAGGGTAGGGGTGGATGGTTCAGGCAACCCTGACGAATCATTCTTGTGAAGGTAAAAAGAAATTGTTCTCCTTGAGTGATGCAATCTAAATGTCAGCTCCATGTGTACGCAGGACGAGCCAAATGATTATATCAAAAGACAACAACTGCGTGAATTAGCAATGCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGCCCTAGCGGTAGTGTTTCTCCTTTCAATTCAAGCGGGATGAAGCGTGCAAAAACTGGTCGCTGA

mRNA sequence

ATGTCAGGTTTGTATAATCCCAACTTCTCTCCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCAGCGGTGATACTGACAGGTATCCTTCCCAGATTCATTCTGTGGCCGAGCATCAGAAACTCGGACCCTTCATGCAAATCCTTCCTATTTGTAGCCGACTTTTAAATCAAGAGATTTTGCGGGTTTCCGGAATGATGTCCAACCAAGGTTTTAGTGAATTTGAGAGATTACGACATAGAAGCCCCAGTCCAATGGCTTCTTCTAACCTTGTGTCAAATATTTCTGGCTCAGGTTTGGCAGCTGGAATGGACTTCCTCAGGAGGTTAAGTGGAAATCCTGGAATGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCTAGTTCATTTACTGTAAGAGGATTTTGCTTCAATTTTGTTGGACGACTTCTTGGACCGAGAGGCAATTCTCTGAAGCGGGTAGAAGCTACTACAGGATGTCGTGTGTATATCAGAGGAAAGGAGAAACTCCGAGGAAGACTTGGTTATGAACATCTGAACGAACCACTGCATGTCCTAATTGAGGCTGATTTACCTGCCAATATCATTGATATCAGGCTGAGACAGGCACAAGAAATTATAGAAGAACTACTTAAACCCGTGGACGAGCCAAATGATTATATCAAAAGACAACAACTGCGTGAATTAGCAATGCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGCCCTAGCGGTAGTGTTTCTCCTTTCAATTCAAGCGGGATGAAGCGTGCAAAAACTGGTCGCTGA

Coding sequence (CDS)

ATGTCAGGTTTGTATAATCCCAACTTCTCTCCTGCAAGAGCTGCTTCTCCTCAGATTAGAAGCAGCGGTGATACTGACAGGTATCCTTCCCAGATTCATTCTGTGGCCGAGCATCAGAAACTCGGACCCTTCATGCAAATCCTTCCTATTTGTAGCCGACTTTTAAATCAAGAGATTTTGCGGGTTTCCGGAATGATGTCCAACCAAGGTTTTAGTGAATTTGAGAGATTACGACATAGAAGCCCCAGTCCAATGGCTTCTTCTAACCTTGTGTCAAATATTTCTGGCTCAGGTTTGGCAGCTGGAATGGACTTCCTCAGGAGGTTAAGTGGAAATCCTGGAATGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCTAGTTCATTTACTGTAAGAGGATTTTGCTTCAATTTTGTTGGACGACTTCTTGGACCGAGAGGCAATTCTCTGAAGCGGGTAGAAGCTACTACAGGATGTCGTGTGTATATCAGAGGAAAGGAGAAACTCCGAGGAAGACTTGGTTATGAACATCTGAACGAACCACTGCATGTCCTAATTGAGGCTGATTTACCTGCCAATATCATTGATATCAGGCTGAGACAGGCACAAGAAATTATAGAAGAACTACTTAAACCCGTGGACGAGCCAAATGATTATATCAAAAGACAACAACTGCGTGAATTAGCAATGCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGCCCTAGCGGTAGTGTTTCTCCTTTCAATTCAAGCGGGATGAAGCGTGCAAAAACTGGTCGCTGA

Protein sequence

MSGLYNPNFSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQEILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFLRRLSGNPGMTMDWQGAPASPSSFTVRGFCFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR

Homology

[Close]

BLAST of IVF0019865 vs. ExPASy Swiss-Prot
Match: Q8GYR4 (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.4e-101
Identity = 202/286 (70.63%), Postives = 229/286 (80.07%), Query Frame = 0


Query: 1   MSGLYN-PNFSPARAASPQIRS-SGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQ 60
           MSGLYN  NFSP+RAASPQIR+ S D D +Y SQ+  +AEHQKLGPFMQ+LPICSRLLNQ
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQL--LAEHQKLGPFMQVLPICSRLLNQ 60

Query: 61  EILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFL--RRLSGNPGM 120
           EI R++GMM NQGF++F+RLRHRSPSPMAS NL+SN+SG GL  G + L   R+ G  GM
Sbjct: 61  EIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGL-GGWNGLPPERIGGPHGM 120

Query: 121 TMDWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIR 180
            M+WQGAPASPSS+ V+              FNFVGRLLGPRGNSLKRVEATTGCRVYIR
Sbjct: 121 AMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 180

Query: 181 GK---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDE 240
           GK         EKL+G+ GYEHLNE LH+LIEADLP +I+DI+LRQAQEIIEEL+KPVDE
Sbjct: 181 GKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDE 240

Query: 241 PNDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 262
             DYIKRQQLRELA+LNSN RE SPGPSGSVSPFNS+ MKR KTGR
Sbjct: 241 SQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of IVF0019865 vs. ExPASy Swiss-Prot
Match: Q9ZVI3 (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.2e-100
Identity = 206/287 (71.78%), Postives = 228/287 (79.44%), Query Frame = 0


Query: 1   MSGLYNPN--FSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQE 60
           MSGLYN +  FSPARAASPQIRS+ + D        +AEHQKL PFMQ+LPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFL--RRLSGNPGMT 120
           + RVSGMMSNQGF +F+RLRHRSPSPMASSNL+SN+S +GL  G + L   RLSG PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGL-GGWNGLSQERLSGTPGMT 120

Query: 121 MDWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRG 180
           MDWQGAP SPSS+TV+              FNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 K---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEP 240
           K         +KLRGR GYEHLNE LH+LIEADLPA+I++IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 NDYIKRQQLRELAMLNS-NFREESPGPS--GSVSPFNSSGMKRAKTG 261
            D+IKRQQLRELA+LNS N REESPGPS  GSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of IVF0019865 vs. ExPASy Swiss-Prot
Match: Q75GR5 (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 8.9e-86
Identity = 176/284 (61.97%), Postives = 213/284 (75.00%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSS-GDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQE 60
           MSGLY+P FSPAR  SPQIRS+  D D +Y +++  +AEHQKLGPFMQ+LPICS+LL+QE
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAEL--LAEHQKLGPFMQVLPICSKLLSQE 60

Query: 61  ILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFLRRLSGNP-GMTM 120
           I+RVS ++ N GF +F+R R RSPSPM+S N  SN SG+G +      +   G P G +M
Sbjct: 61  IMRVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQERLGFPQGTSM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAP SPSS  V+              FNFVGR+LGPRGNSLKRVEA+TGCRV+IRGK
Sbjct: 121 DWQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    +KLRG+ GYEHL++PLH+LIEA+ PA+IID RLR AQE+IEELLKPVDE  
Sbjct: 181 GSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 262
           D+ KRQQLRELAMLNS  RE+SP P GSVSPF++ GMKRAKTG+
Sbjct: 241 DFYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281

[Close]

BLAST of IVF0019865 vs. ExPASy Swiss-Prot
Match: Q0WLR1 (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.4e-54
Identity = 126/276 (45.65%), Postives = 172/276 (62.32%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQEILRVSGM 65
           +PNFS    + P      + ++Y S++  +AE  KL PF+ +LP   RL+NQEILRV+ +
Sbjct: 41  SPNFSGGLRSQPSFLV--EQEKYLSEL--LAERHKLTPFLPVLPHVCRLMNQEILRVTTL 100

Query: 66  MSNQGFSEFERLRHRSPSPMASSNLVSNISG--SGLAAGMDFLRRLSGNPGMTMDWQGAP 125
           + N       + R   PSP+AS  +  N     +G A+     R +S +P    +W  +P
Sbjct: 101 LEN----ALSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERSVSSSP--APNWLNSP 160

Query: 126 ASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK------ 185
            S S   V+              +NFVGRLLGPRGNSLKRVEA+T CRV IRG+      
Sbjct: 161 GSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP 220

Query: 186 ---EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQ 245
              + +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL PV+E +D+ K+Q
Sbjct: 221 IKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQ 280

Query: 246 QLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKT 260
           QLRELA+LN + REE    SGS+SP+NS GMKRAKT
Sbjct: 281 QLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of IVF0019865 vs. ExPASy Swiss-Prot
Match: Q9FKT4 (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.5e-53
Identity = 127/276 (46.01%), Postives = 169/276 (61.23%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQEILRVSGM 65
           +PN+S    +   +    + ++Y S++  +AE  KL PF+ +LP   RLLNQEILRV+ +
Sbjct: 45  SPNYSGGLRSQSSV--FVEQEKYLSEL--LAERHKLTPFLPVLPHAFRLLNQEILRVTTL 104

Query: 66  MSNQGFSEFERLRHRSPSPMASSNLVSNISG--SGLAAGMDFLRRLSGNPGMTMDWQGAP 125
           + N        L H  PSP+AS  +  N     +G A+     R +  +PG   +W  +P
Sbjct: 105 LENATVLSQSGLDH--PSPLASGGIFQNARADMNGWASQFPSERSVPSSPG--PNWLNSP 164

Query: 126 ASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK------ 185
            S S    +              FNFVGRLLGPRGNSLKRVEA+T CRV IRG+      
Sbjct: 165 GSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP 224

Query: 186 ---EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQ 245
              E +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL P++E +D  K+Q
Sbjct: 225 IKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQ 284

Query: 246 QLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKT 260
           QLRELA+LN   REE    SGSVSP+NS GMKRAKT
Sbjct: 285 QLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of IVF0019865 vs. ExPASy TrEMBL
Match: A0A6J1DU72 (KH domain-containing protein At3g08620-like OS=Momordica charantia OX=3673 GN=LOC111024049 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.3e-119
Identity = 236/284 (83.10%), Postives = 245/284 (86.27%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIRSS D D +Y S++  +AEHQKLGPFMQILPICSRLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSQYLSEL--LAEHQKLGPFMQILPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFS+FERLRHRSPSPMASSNLVSNISG+G     G+    RLSG+ GMTM
Sbjct: 61  LRVSGMMSNQGFSDFERLRHRSPSPMASSNLVSNISGTGFGGWNGLPQEPRLSGSSGMTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKRILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 262
           DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of IVF0019865 vs. ExPASy TrEMBL
Match: A0A6J1I3I7 (KH domain-containing protein At2g38610-like OS=Cucurbita maxima OX=3661 GN=LOC111470213 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.3e-116
Identity = 232/284 (81.69%), Postives = 244/284 (85.92%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIR+S D D +Y S++  +AEHQKLGPFMQILPIC RLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSEL--LAEHQKLGPFMQILPICKRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFS+F+RLRHRSPSPMASSNL+SNISG+G  +  G+    RLSGNPG TM
Sbjct: 61  LRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPS-GSVSPFNSSGMKRAKTG 261
           DYIKRQQLRELAMLNSNFREESPGPS GSVSPFNSSGMKRAKTG
Sbjct: 241 DYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 282

[Close]

BLAST of IVF0019865 vs. ExPASy TrEMBL
Match: A0A6J1FU50 (KH domain-containing protein At2g38610 OS=Cucurbita moschata OX=3662 GN=LOC111446905 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.3e-116
Identity = 232/284 (81.69%), Postives = 244/284 (85.92%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIR+S D D +Y S++  +AEHQKLGPFMQILPIC RLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSEL--LAEHQKLGPFMQILPICKRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFS+F+RLRHRSPSPMASSNL+SNISG+G  +  G+    RLSGNPG TM
Sbjct: 61  LRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPS-GSVSPFNSSGMKRAKTG 261
           DYIKRQQLRELAMLNSNFREESPGPS GSVSPFNSSGMKRAKTG
Sbjct: 241 DYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 282

[Close]

BLAST of IVF0019865 vs. ExPASy TrEMBL
Match: A0A6J1IZS3 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481428 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.6e-115
Identity = 227/284 (79.93%), Postives = 238/284 (83.80%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIRSS D D  Y S++  +AEH KLGPFMQILPICSRLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSEL--LAEHHKLGPFMQILPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LR+SGMMSNQGFS+ ERLR RSPSPM SSNLVSN+SG+G     G+   + LSGNPGMTM
Sbjct: 61  LRISGMMSNQGFSDLERLRQRSPSPMPSSNLVSNVSGAGFGGWNGLPQEQMLSGNPGMTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKL GRLGYEHLNEPLHVLIEADLP NI+DIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPDKEEKLHGRLGYEHLNEPLHVLIEADLPPNIVDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 262
           DYIKRQQLRELAMLNSN REESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 DYIKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of IVF0019865 vs. ExPASy TrEMBL
Match: A0A4Y1RRE6 (RNA-binding KH domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_018030 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.3e-115
Identity = 221/282 (78.37%), Postives = 241/282 (85.46%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIRS+ D D +Y S++  +AEHQKLGPFMQ+LPICSRLLNQEI
Sbjct: 8   MSGLYNPNFSPARAASPQIRSTPDVDSQYLSEL--LAEHQKLGPFMQVLPICSRLLNQEI 67

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFLRRLSGNPGMTMDW 120
           LRVSGMMSNQGF +F+R+RHRSPSPMASSNL+SN++G    AGMD L+RL G  GMTMDW
Sbjct: 68  LRVSGMMSNQGFGDFDRMRHRSPSPMASSNLMSNVTGQDWVAGMDSLKRLGGPHGMTMDW 127

Query: 121 QGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK-- 180
           QGAPASPSS+TV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK  
Sbjct: 128 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 187

Query: 181 -------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240
                  EKLRGR GYEHLNEPLH+LIEADLPAN++DIRLRQAQEIIEELLKPVDE  D+
Sbjct: 188 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDF 247

Query: 241 IKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 262
           IKRQQLRELA+LNSNFREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 248 IKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 287

[Close]

BLAST of IVF0019865 vs. NCBI nr
Match: XP_038905002.1 (KH domain-containing protein At3g08620-like isoform X1 [Benincasa hispida])

HSP 1 Score: 440 bits (1132), Expect = 4.08e-154
Identity = 238/284 (83.80%), Postives = 247/284 (86.97%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIRSSGD D +Y S++  +AEHQKLGPFMQILPICSRLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSGDADSQYLSEL--LAEHQKLGPFMQILPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFS+FERLRHRSPSPMAS+NLVSNISG+G     G+    RLSGNPGMTM
Sbjct: 61  LRVSGMMSNQGFSDFERLRHRSPSPMASTNLVSNISGTGFGGWNGLPQEPRLSGNPGMTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 261
           DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of IVF0019865 vs. NCBI nr
Match: XP_004137670.3 (KH domain-containing protein At3g08620 [Cucumis sativus] >KGN58951.2 hypothetical protein Csa_001075 [Cucumis sativus])

HSP 1 Score: 442 bits (1136), Expect = 1.17e-153
Identity = 239/284 (84.15%), Postives = 248/284 (87.32%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIR+SGD D +Y S++  +AEHQKLGPFMQILPICSRLLNQEI
Sbjct: 70  MSGLYNPNFSPARAASPQIRTSGDADSQYLSEL--LAEHQKLGPFMQILPICSRLLNQEI 129

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISG+G  +  G+    RLSGNPGMTM
Sbjct: 130 LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGTGFGSWNGLPQEPRLSGNPGMTM 189

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 190 DWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 249

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 250 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 309

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 261
           DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 310 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 351

[Close]

BLAST of IVF0019865 vs. NCBI nr
Match: XP_022157317.1 (KH domain-containing protein At3g08620-like [Momordica charantia])

HSP 1 Score: 434 bits (1116), Expect = 1.11e-151
Identity = 236/284 (83.10%), Postives = 245/284 (86.27%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIRSS D D +Y S++  +AEHQKLGPFMQILPICSRLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSQYLSEL--LAEHQKLGPFMQILPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFS+FERLRHRSPSPMASSNLVSNISG+G     G+    RLSG+ GMTM
Sbjct: 61  LRVSGMMSNQGFSDFERLRHRSPSPMASSNLVSNISGTGFGGWNGLPQEPRLSGSSGMTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKRILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 261
           DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of IVF0019865 vs. NCBI nr
Match: XP_022941600.1 (KH domain-containing protein At2g38610 [Cucurbita moschata] >XP_022971516.1 KH domain-containing protein At2g38610-like [Cucurbita maxima] >XP_023539745.1 KH domain-containing protein At2g38610-like [Cucurbita pepo subsp. pepo] >KAG6596299.1 KH domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027851.1 KH domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 426 bits (1094), Expect = 2.59e-148
Identity = 232/284 (81.69%), Postives = 244/284 (85.92%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIR+S D D +Y S++  +AEHQKLGPFMQILPIC RLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSEL--LAEHQKLGPFMQILPICKRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LRVSGMMSNQGFS+F+RLRHRSPSPMASSNL+SNISG+G  +  G+    RLSGNPG TM
Sbjct: 61  LRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSG-SVSPFNSSGMKRAKTG 260
           DYIKRQQLRELAMLNSNFREESPGPSG SVSPFNSSGMKRAKTG
Sbjct: 241 DYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 282

[Close]

BLAST of IVF0019865 vs. NCBI nr
Match: XP_022982601.1 (KH domain-containing protein At3g08620-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 421 bits (1082), Expect = 1.68e-146
Identity = 227/284 (79.93%), Postives = 238/284 (83.80%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRSSGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQEI 60
           MSGLYNPNFSPARAASPQIRSS D D  Y S++  +AEH KLGPFMQILPICSRLLNQEI
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSEL--LAEHHKLGPFMQILPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAA--GMDFLRRLSGNPGMTM 120
           LR+SGMMSNQGFS+ ERLR RSPSPM SSNLVSN+SG+G     G+   + LSGNPGMTM
Sbjct: 61  LRISGMMSNQGFSDLERLRQRSPSPMPSSNLVSNVSGAGFGGWNGLPQEQMLSGNPGMTM 120

Query: 121 DWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           DWQGAPASPSSFTV+              FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 DWQGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 ---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
                    EKL GRLGYEHLNEPLHVLIEADLP NI+DIRLRQAQEIIEELLKPVDEPN
Sbjct: 181 GSIKDPDKEEKLHGRLGYEHLNEPLHVLIEADLPPNIVDIRLRQAQEIIEELLKPVDEPN 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 261
           DYIKRQQLRELAMLNSN REESPGPSGSVSPFNSSGMKRAKTGR
Sbjct: 241 DYIKRQQLRELAMLNSNLREESPGPSGSVSPFNSSGMKRAKTGR 282

[Close]

BLAST of IVF0019865 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-102
Identity = 202/286 (70.63%), Postives = 229/286 (80.07%), Query Frame = 0


Query: 1   MSGLYN-PNFSPARAASPQIRS-SGDTD-RYPSQIHSVAEHQKLGPFMQILPICSRLLNQ 60
           MSGLYN  NFSP+RAASPQIR+ S D D +Y SQ+  +AEHQKLGPFMQ+LPICSRLLNQ
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQL--LAEHQKLGPFMQVLPICSRLLNQ 60

Query: 61  EILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFL--RRLSGNPGM 120
           EI R++GMM NQGF++F+RLRHRSPSPMAS NL+SN+SG GL  G + L   R+ G  GM
Sbjct: 61  EIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGL-GGWNGLPPERIGGPHGM 120

Query: 121 TMDWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIR 180
            M+WQGAPASPSS+ V+              FNFVGRLLGPRGNSLKRVEATTGCRVYIR
Sbjct: 121 AMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 180

Query: 181 GK---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDE 240
           GK         EKL+G+ GYEHLNE LH+LIEADLP +I+DI+LRQAQEIIEEL+KPVDE
Sbjct: 181 GKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDE 240

Query: 241 PNDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 262
             DYIKRQQLRELA+LNSN RE SPGPSGSVSPFNS+ MKR KTGR
Sbjct: 241 SQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283

[Close]

BLAST of IVF0019865 vs. TAIR 10
Match: AT2G38610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 366.7 bits (940), Expect = 1.6e-101
Identity = 206/287 (71.78%), Postives = 228/287 (79.44%), Query Frame = 0


Query: 1   MSGLYNPN--FSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQE 60
           MSGLYN +  FSPARAASPQIRS+ + D        +AEHQKL PFMQ+LPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFL--RRLSGNPGMT 120
           + RVSGMMSNQGF +F+RLRHRSPSPMASSNL+SN+S +GL  G + L   RLSG PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGL-GGWNGLSQERLSGTPGMT 120

Query: 121 MDWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRG 180
           MDWQGAP SPSS+TV+              FNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 K---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEP 240
           K         +KLRGR GYEHLNE LH+LIEADLPA+I++IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 NDYIKRQQLRELAMLNS-NFREESPGPS--GSVSPFNSSGMKRAKTG 261
            D+IKRQQLRELA+LNS N REESPGPS  GSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of IVF0019865 vs. TAIR 10
Match: AT2G38610.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 366.7 bits (940), Expect = 1.6e-101
Identity = 206/287 (71.78%), Postives = 228/287 (79.44%), Query Frame = 0


Query: 1   MSGLYNPN--FSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQE 60
           MSGLYN +  FSPARAASPQIRS+ + D        +AEHQKL PFMQ+LPICSRLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFSEFERLRHRSPSPMASSNLVSNISGSGLAAGMDFL--RRLSGNPGMT 120
           + RVSGMMSNQGF +F+RLRHRSPSPMASSNL+SN+S +GL  G + L   RLSG PGMT
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGL-GGWNGLSQERLSGTPGMT 120

Query: 121 MDWQGAPASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRG 180
           MDWQGAP SPSS+TV+              FNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 K---------EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEP 240
           K         +KLRGR GYEHLNE LH+LIEADLPA+I++IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 NDYIKRQQLRELAMLNS-NFREESPGPS--GSVSPFNSSGMKRAKTG 261
            D+IKRQQLRELA+LNS N REESPGPS  GSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of IVF0019865 vs. TAIR 10
Match: AT4G26480.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 214.5 bits (545), Expect = 9.9e-56
Identity = 126/276 (45.65%), Postives = 172/276 (62.32%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQEILRVSGM 65
           +PNFS    + P      + ++Y S++  +AE  KL PF+ +LP   RL+NQEILRV+ +
Sbjct: 41  SPNFSGGLRSQPSFLV--EQEKYLSEL--LAERHKLTPFLPVLPHVCRLMNQEILRVTTL 100

Query: 66  MSNQGFSEFERLRHRSPSPMASSNLVSNISG--SGLAAGMDFLRRLSGNPGMTMDWQGAP 125
           + N       + R   PSP+AS  +  N     +G A+     R +S +P    +W  +P
Sbjct: 101 LEN----ALSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERSVSSSP--APNWLNSP 160

Query: 126 ASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK------ 185
            S S   V+              +NFVGRLLGPRGNSLKRVEA+T CRV IRG+      
Sbjct: 161 GSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP 220

Query: 186 ---EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQ 245
              + +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL PV+E +D+ K+Q
Sbjct: 221 IKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQ 280

Query: 246 QLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKT 260
           QLRELA+LN + REE    SGS+SP+NS GMKRAKT
Sbjct: 281 QLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306

[Close]

BLAST of IVF0019865 vs. TAIR 10
Match: AT5G56140.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-54
Identity = 127/276 (46.01%), Postives = 169/276 (61.23%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRSSGDTDRYPSQIHSVAEHQKLGPFMQILPICSRLLNQEILRVSGM 65
           +PN+S    +   +    + ++Y S++  +AE  KL PF+ +LP   RLLNQEILRV+ +
Sbjct: 45  SPNYSGGLRSQSSV--FVEQEKYLSEL--LAERHKLTPFLPVLPHAFRLLNQEILRVTTL 104

Query: 66  MSNQGFSEFERLRHRSPSPMASSNLVSNISG--SGLAAGMDFLRRLSGNPGMTMDWQGAP 125
           + N        L H  PSP+AS  +  N     +G A+     R +  +PG   +W  +P
Sbjct: 105 LENATVLSQSGLDH--PSPLASGGIFQNARADMNGWASQFPSERSVPSSPG--PNWLNSP 164

Query: 126 ASPSSFTVRGFC-----------FNFVGRLLGPRGNSLKRVEATTGCRVYIRGK------ 185
            S S    +              FNFVGRLLGPRGNSLKRVEA+T CRV IRG+      
Sbjct: 165 GSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDP 224

Query: 186 ---EKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQ 245
              E +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL P++E +D  K+Q
Sbjct: 225 IKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQ 284

Query: 246 QLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKT 260
           QLRELA+LN   REE    SGSVSP+NS GMKRAKT
Sbjct: 285 QLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312

The following BLAST results are available for this feature:

BLAST of IVF0019865 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYR4	3.4e-101	70.63	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08...	[more]
Q9ZVI3	2.2e-100	71.78	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38...	[more]
Q75GR5	8.9e-86	61.97	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
Q0WLR1	1.4e-54	45.65	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26...	[more]
Q9FKT4	1.5e-53	46.01	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56...	[more]

BLAST of IVF0019865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU72	6.3e-119	83.10	KH domain-containing protein At3g08620-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1I3I7	2.3e-116	81.69	KH domain-containing protein At2g38610-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FU50	2.3e-116	81.69	KH domain-containing protein At2g38610 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IZS3	5.6e-115	79.93	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A4Y1RRE6	7.3e-115	78.37	RNA-binding KH domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_01803...	[more]

BLAST of IVF0019865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905002.1	4.08e-154	83.80	KH domain-containing protein At3g08620-like isoform X1 [Benincasa hispida]	[more]
XP_004137670.3	1.17e-153	84.15	KH domain-containing protein At3g08620 [Cucumis sativus] >KGN58951.2 hypothetica...	[more]
XP_022157317.1	1.11e-151	83.10	KH domain-containing protein At3g08620-like [Momordica charantia]	[more]
XP_022941600.1	2.59e-148	81.69	KH domain-containing protein At2g38610 [Cucurbita moschata] >XP_022971516.1 KH d...	[more]
XP_022982601.1	1.68e-146	79.93	KH domain-containing protein At3g08620-like isoform X1 [Cucurbita maxima]	[more]

BLAST of IVF0019865 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08620.1	2.4e-102	70.63	RNA-binding KH domain-containing protein	[more]
AT2G38610.1	1.6e-101	71.78	RNA-binding KH domain-containing protein	[more]
AT2G38610.2	1.6e-101	71.78	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	9.9e-56	45.65	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	1.1e-54	46.01	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 123..211 e-value: 0.0048 score: 26.1
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 36..73 e-value: 4.1E-8 score: 32.7
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 137..165 e-value: 1.2E-4 score: 21.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 24..242 e-value: 1.8E-47 score: 164.0
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 136..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..261
None	No IPR available	PANTHER	PTHR11208:SF114	STAR PROTEIN, HOMODIMERIZATION REGION-RELATED	coord: 2..261
None	No IPR available	CDD	cd02395	SF1_like-KH	coord: 136..236 e-value: 1.97227E-40 score: 133.908
IPR045071	KH domain-containing BBP-like	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 2..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019865.1	IVF0019865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding