IVF0019860 (gene) Melon (IVF77) v1

Overview


Name	IVF0019860
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S17-like
Location	chr04: 29593442 .. 29594197 (-)
RNA-Seq Expression	IVF0019860
Synteny	IVF0019860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACGCCTTCGTCTCTTTAGGTAAAACTCTGCGCTCCGATTGGCCGCCCTTTCTTCCGCCGTCGCTAGGGCACACTTTCATCCTGCACCTCATTCCTCCGGCAGCAAGATGGGTCGCGTACGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTTATTGAGCGCTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGATTCTCGAAGAAGTTGCCATTATTCCTTCCAAGAGACTACGAAATAAGATTGCCGGATTCTCCACCCACCTCATGAAGCGAATCCAGAAGGGACCGGTTCGCGGCATATCTCTGAAGCTCCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTTCCAGATGTCTCCGCCATTAAAACCGAGCAAATCGAAGTGGATAAGGAGACTCTCGATATGCTTTCTGCGCTTGGAATGAACGATATTCCTGGGCTTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGGTTTGGATTAGGAGGTCGCGGTAGGAGGTATTAAGATTATTGGCTAGGGTTTTTCTTCTTCTTCTTCTTCTGATTTTCTGTTGTGGCTCAATACAATTTTGTTTTTTAGTTTTGTTTATGAGTATTGTTACTTTCTGTCAAGCTAGAGAATATGAAATTTTCATATTGATTTCAAGTAACATTCTTCAATAGAGAGATTTGGTTTCGAATTTTTTTAGACTGTTTTGTTTAACCCTGTTTTATTGCTGGTTTTGTTCATTGTT

mRNA sequence

TACGCCTTCGTCTCTTTAGGTAAAACTCTGCGCTCCGATTGGCCGCCCTTTCTTCCGCCGTCGCTAGGGCACACTTTCATCCTGCACCTCATTCCTCCGGCAGCAAGATGGGTCGCGTACGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTTATTGAGCGCTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGATTCTCGAAGAAGTTGCCATTATTCCTTCCAAGAGACTACGAAATAAGATTGCCGGATTCTCCACCCACCTCATGAAGCGAATCCAGAAGGGACCGGTTCGCGGCATATCTCTGAAGCTCCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTTCCAGATGTCTCCGCCATTAAAACCGAGCAAATCGAAGTGGATAAGGAGACTCTCGATATGCTTTCTGCGCTTGGAATGAACGATATTCCTGGGCTTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGGTTTGGATTAGGAGGTCGCGGTAGGAGGTATTAAGATTATTGGCTAGGGTTTTTCTTCTTCTTCTTCTTCTGATTTTCTGTTGTGGCTCAATACAATTTTGTTTTTTAGTTTTGTTTATGAGTATTGTTACTTTCTGTCAAGCTAGAGAATATGAAATTTTCATATTGATTTCAAGTAACATTCTTCAATAGAGAGATTTGGTTTCGAATTTTTTTAGACTGTTTTGTTTAACCCTGTTTTATTGCTGGTTTTGTTCATTGTT

Coding sequence (CDS)

ATGGGTCGCGTACGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTTATTGAGCGCTACTACTCGCGCATGACCCTCGACTTCCACACCAACAAGAAGATTCTCGAAGAAGTTGCCATTATTCCTTCCAAGAGACTACGAAATAAGATTGCCGGATTCTCCACCCACCTCATGAAGCGAATCCAGAAGGGACCGGTTCGCGGCATATCTCTGAAGCTCCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTTCCAGATGTCTCCGCCATTAAAACCGAGCAAATCGAAGTGGATAAGGAGACTCTCGATATGCTTTCTGCGCTTGGAATGAACGATATTCCTGGGCTTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGGTTTGGATTAGGAGGTCGCGGTAGGAGGTATTAA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQVDPTVPQQVGFGLGGRGRRY

Homology

[Close]

BLAST of IVF0019860 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-57
Identity = 121/145 (83.45%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT+ IEVDKETLDMLSALGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPTVPQQV------GFGLGGRGRRY 140
               PQ V      G G GG GR+Y
Sbjct: 121 QAAEPQAVAALPSYGRGGGGFGRKY 144

[Close]

BLAST of IVF0019860 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of IVF0019860 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-54
Identity = 114/141 (80.85%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           DP   +     FG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of IVF0019860 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-54
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVGFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of IVF0019860 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 208.0 bits (528), Expect = 6.9e-53
Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK + ++VDKETL+ML++LGM+DI G+ QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of IVF0019860 vs. ExPASy TrEMBL
Match: A0A5A7TQK2 (40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004290 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. ExPASy TrEMBL
Match: A0A1S3B6R7 (40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. ExPASy TrEMBL
Match: A0A0A0LB02 (40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.5e-69
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. ExPASy TrEMBL
Match: A0A6J1CU03 (40S ribosomal protein S17-like OS=Momordica charantia OX=3673 GN=LOC111014323 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.1e-67
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGR-GRRY 140
           DP+VPQQVGFGLGGR GRRY
Sbjct: 121 DPSVPQQVGFGLGGRGGRRY 140

[Close]

BLAST of IVF0019860 vs. ExPASy TrEMBL
Match: A0A6J1FC93 (40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.7e-67
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. NCBI nr
Match: XP_008442886.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa] >TYK25293.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 268 bits (685), Expect = 2.58e-90
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 139
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. NCBI nr
Match: XP_004136500.1 (40S ribosomal protein S17 [Cucumis sativus])

HSP 1 Score: 267 bits (683), Expect = 5.20e-90
Identity = 138/139 (99.28%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 139
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. NCBI nr
Match: XP_038904935.1 (40S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 266 bits (680), Expect = 1.49e-89
Identity = 136/139 (97.84%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 139
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. NCBI nr
Match: KAE8651099.1 (hypothetical protein Csa_001438 [Cucumis sativus])

HSP 1 Score: 262 bits (670), Expect = 1.02e-87
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGR 137
           DPTVPQQVGFGLGGRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of IVF0019860 vs. NCBI nr
Match: XP_023539023.1 (40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (667), Expect = 1.43e-87
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 139
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of IVF0019860 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of IVF0019860 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of IVF0019860 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of IVF0019860 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of IVF0019860 vs. TAIR 10
Match: AT2G05220.1 (Ribosomal S17 family protein )

HSP 1 Score: 213.8 bits (543), Expect = 9.0e-56
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVGFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

The following BLAST results are available for this feature:

BLAST of IVF0019860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49215	3.5e-57	83.45	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9LZ17	1.5e-55	80.85	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
P49205	1.3e-54	80.85	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
Q9SJ36	1.3e-54	80.71	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
Q9SQZ1	6.9e-53	87.60	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

BLAST of IVF0019860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQK2	3.2e-69	100.00	40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B6R7	3.2e-69	100.00	40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1	[more]
A0A0A0LB02	5.5e-69	99.28	40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1	[more]
A0A6J1CU03	5.1e-67	97.86	40S ribosomal protein S17-like OS=Momordica charantia OX=3673 GN=LOC111014323 PE...	[more]
A0A6J1FC93	6.7e-67	96.40	40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=...	[more]

BLAST of IVF0019860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442886.1	2.58e-90	100.00	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribos...	[more]
XP_004136500.1	5.20e-90	99.28	40S ribosomal protein S17 [Cucumis sativus]	[more]
XP_038904935.1	1.49e-89	97.84	40S ribosomal protein S17-like [Benincasa hispida]	[more]
KAE8651099.1	1.02e-87	99.27	hypothetical protein Csa_001438 [Cucumis sativus]	[more]
XP_023539023.1	1.43e-87	97.12	40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0019860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04800.1	1.1e-56	80.85	Ribosomal S17 family protein	[more]
AT5G04800.2	1.1e-56	80.85	Ribosomal S17 family protein	[more]
AT5G04800.3	1.1e-56	80.85	Ribosomal S17 family protein	[more]
AT5G04800.4	1.1e-56	80.85	Ribosomal S17 family protein	[more]
AT2G05220.1	9.0e-56	80.71	Ribosomal S17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..120 e-value: 6.2E-61 score: 203.7
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..139
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.982433
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 1.0E-32 score: 113.5
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
None	No IPR available	PANTHER	PTHR10732:SF5	40S RIBOSOMAL PROTEIN S17	coord: 1..139
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0019860.2	IVF0019860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome