IVF0019773 (gene) Melon (IVF77) v1

Overview
NameIVF0019773
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionprecursor of CEP12
Locationchr07: 6154269 .. 6154541 (+)
RNA-Seq ExpressionIVF0019773
SyntenyIVF0019773
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCACAGAAGCTTACATTTGAGTAATTTCTTTCCCCTTATCGCTCTCCTTCTTCTTCTCCTTCTTCTTCACTCTCTTCTTGTAACATCATCAAGGCCATTGCATGACATTCATCCCCATAATCGTCGTGCTATAACACCTCCTGCTCCGGTATCGGAGACGTCCTTCTCGATAAACCGGTATAAATATGTTGAAACGAATGCGTTTCGACCGACCTCGCCCGGACATAGCCCCGGGGTTGGCCACAATGAGCCACCAGGTAGGCCGTAG

mRNA sequence

ATGGCTCACAGAAGCTTACATTTGAGTAATTTCTTTCCCCTTATCGCTCTCCTTCTTCTTCTCCTTCTTCTTCACTCTCTTCTTGTAACATCATCAAGGCCATTGCATGACATTCATCCCCATAATCGTCGTGCTATAACACCTCCTGCTCCGGTATCGGAGACGTCCTTCTCGATAAACCGGTATAAATATGTTGAAACGAATGCGTTTCGACCGACCTCGCCCGGACATAGCCCCGGGGTTGGCCACAATGAGCCACCAGGTAGGCCGTAG

Coding sequence (CDS)

ATGGCTCACAGAAGCTTACATTTGAGTAATTTCTTTCCCCTTATCGCTCTCCTTCTTCTTCTCCTTCTTCTTCACTCTCTTCTTGTAACATCATCAAGGCCATTGCATGACATTCATCCCCATAATCGTCGTGCTATAACACCTCCTGCTCCGGTATCGGAGACGTCCTTCTCGATAAACCGGTATAAATATGTTGAAACGAATGCGTTTCGACCGACCTCGCCCGGACATAGCCCCGGGGTTGGCCACAATGAGCCACCAGGTAGGCCGTAG

Protein sequence

MAHRSLHLSNFFPLIALLLLLLLLHSLLVTSSRPLHDIHPHNRRAITPPAPVSETSFSINRYKYVETNAFRPTSPGHSPGVGHNEPPGRP
Homology
BLAST of IVF0019773 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-06
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 17 LLLLLLLLHSLLVTSSR-PLHDIHPHNRRAITPPAPVSETS--FSINRYKYVETNAFRPT 76
          L LL+L LH    T++R P+    P +    +PP+P  +    F IN YK +E  AFRPT
Sbjct: 16 LFLLVLHLHFETTTAARKPVRVFGPPSSIEWSPPSPPKDDFEWFEINIYKNIEQTAFRPT 75

Query: 77 SPGHSPGVGHNEPPGRP 91
            G S G+GH +PPG P
Sbjct: 76 GQGPSQGIGHKDPPGAP 92

BLAST of IVF0019773 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-04
Identity = 22/47 (46.81%), Postives = 28/47 (59.57%), Query Frame = 0

Query: 47 TPPAPVSET---SFSINRYKYVETNAFRPTSPGHSPGVGHNEPPGRP 91
          +PP P  +       INR+K +E +AFRPT  G S G+GH  PPG P
Sbjct: 40 SPPEPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

BLAST of IVF0019773 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 0

Query: 1  MAHRSLHLSNFFPLIALLLLLLLLHSLLVTSSRPLHDIHPHNRRAITPPAPVS-ETSFSI 60
          MAHRSLHL++FFPL+ALLLLLLLLHSL VTSSRPLH IHPHN  AITPPAPVS ETSFSI
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPHNPHAITPPAPVSLETSFSI 60

Query: 61 NRYKYVETNAFRPTSPGHSPGVGHNEPPGRP 91
          NRYKYVET+AFRPTSPGHSPGVGHNEPPG+P
Sbjct: 61 NRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

BLAST of IVF0019773 vs. ExPASy TrEMBL
Match: W9S854 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.3e-10
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 18 LLLLLLLHSL-LVTSSRPLHDIHPHNRRAITP-----PAPVSETSFSINRYKYVETNAFR 77
          + +LLLLHS+   +SSRPLH +HP       P     P P S   FS+N YK  ET+AFR
Sbjct: 14 MAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYKSKPRPPSTKWFSVNHYKIAETDAFR 73

Query: 78 PTSPGHSPGVGHNEPP 88
          PT+PGHSPGVGH  PP
Sbjct: 74 PTAPGHSPGVGHGSPP 89

BLAST of IVF0019773 vs. ExPASy TrEMBL
Match: A0A2C9UJ23 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 12 FPLIA-LLLLLLLLHSLLVTSSRPLHDIHP---HNRRAITPPAPVSETSFSINRYKYVET 71
          F L+A +++LL L   L   +SR LH IHP    N+ ++  P P S   + INRYKY E+
Sbjct: 8  FSLVAGVVILLHLQMDLAEAASRQLH-IHPPPFPNKLSLRNPKPPSFILYGINRYKYTES 67

Query: 72 NAFRPTSPGHSPGVGHNEPPGRP 91
           AFRPTSPGHSPGVGH +PPG P
Sbjct: 68 EAFRPTSPGHSPGVGHKDPPGAP 89

BLAST of IVF0019773 vs. ExPASy TrEMBL
Match: A0A2C9U3U8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G001300 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 1  MAHRSLHLSNFFPLIALLLLLLLLH-SLLVTSSRPLHDIHPHN--RRAITPPAPVSETSF 60
          MA + L L   F L +L L+ L LH  L   +SRPLH IHP    + ++  P P     +
Sbjct: 1  MADKVLFL---FSLFSLFLVALHLHIDLAEAASRPLH-IHPPTIPKASLRKPKPYFANLY 60

Query: 61 SINRYKYVETNAFRPTSPGHSPGVGHNEPPG 89
          +INR+K+ ET AFRPTSPGHSPGVGH  PPG
Sbjct: 61 AINRFKFTETEAFRPTSPGHSPGVGHENPPG 87

BLAST of IVF0019773 vs. ExPASy TrEMBL
Match: A0A5C7HCP5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019865 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 12 FPLIALLLLLLLLHSLLVTSSRPLHDIH----PHNRRAITPPAPVSETSFSINRYKYVET 71
          F L  L++LLL  +  L+++SRPL   H    P +  ++  P P S   ++INRYK  E 
Sbjct: 6  FTLSFLVVLLLQNNFELISASRPLGVFHPPAIPRSGLSMNKPKPPSIHYYTINRYKKTEA 65

Query: 72 NAFRPTSPGHSPGVGHNEPPGRP 91
           AFRPTSPGHSPGVGHNEPP  P
Sbjct: 66 EAFRPTSPGHSPGVGHNEPPATP 88

BLAST of IVF0019773 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103 bits (257), Expect = 1.57e-26
Identity = 61/99 (61.62%), Postives = 66/99 (66.67%), Query Frame = 0

Query: 2  AHRSLHLSNFFPLIALLLLLLLLHSLLVTSSRPLHDIHP-----------HNRRAITPPA 61
          A RSLH  N  PLI L     LLHSL VTS RPLH I P            +  AI PPA
Sbjct: 3  ARRSLHFINLLPLITL-----LLHSLSVTS-RPLHGIDPLPSAAAMAVVSAHCHAILPPA 62

Query: 62 PVSETSFSINRYKYVETNAFRPTSPGHSPGVGHNEPPGR 89
          PVS  +FSINRYKYVET+AFRPT+PGHSPGVGH +PPGR
Sbjct: 63 PVSTLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPPGR 95

BLAST of IVF0019773 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 2.39e-19
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 19 LLLLLLHSLLVTSSRPLHDIHPH-------NRRAITPPAPVSETSFSINRYKYVETNAFR 78
          L++ LL+ L VTS RP HDI+         NR AITPPA +S  +FSINRYKYVE +AFR
Sbjct: 11 LVVFLLYFLSVTS-RPRHDIYSPAIVVGFGNRHAITPPASMS--TFSINRYKYVEMDAFR 70

Query: 79 PTSPGHSPGVGHNEPPG 88
          PTSPGHSPGVGH +PPG
Sbjct: 71 PTSPGHSPGVGHKDPPG 84

BLAST of IVF0019773 vs. NCBI nr
Match: KAF8033451.1 (hypothetical protein BT93_D2151 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 75.1 bits (183), Expect = 2.43e-15
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 18 LLLLLLLHSLL--VTSSRPLHDIHPHN----RRAITPPAPVSETSFSINRYKYVETNAFR 77
          LL+LLLLH  L    +SRPL   HP      +  +  P P S     INRYK  ET AFR
Sbjct: 13 LLVLLLLHKNLDKTQASRPLEIFHPPRVIPGKSDLMKPRPPSIGRTVINRYKKTETEAFR 72

Query: 78 PTSPGHSPGVGHNEPPGRP 90
          PTSPGHSPGVGHNEPPG P
Sbjct: 73 PTSPGHSPGVGHNEPPGAP 91

BLAST of IVF0019773 vs. NCBI nr
Match: EXC31035.1 (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 74.7 bits (182), Expect = 3.36e-15
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 0

Query: 21 LLLLHSL-LVTSSRPLHDIHPHNRRAITPP-----APVSETSFSINRYKYVETNAFRPTS 80
          LLLLHS+   +SSRPLH +HP       PP      P S   FS+N YK  ET+AFRPT+
Sbjct: 17 LLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYKSKPRPPSTKWFSVNHYKIAETDAFRPTA 76

Query: 81 PGHSPGVGHNEPP 87
          PGHSPGVGH  PP
Sbjct: 77 PGHSPGVGHGSPP 89

BLAST of IVF0019773 vs. NCBI nr
Match: OAY29952.1 (hypothetical protein MANES_15G184800v8 [Manihot esculenta])

HSP 1 Score: 73.2 bits (178), Expect = 1.32e-14
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 12 FPLIALLLLLLLLH-SLLVTSSRPLHDIHPH---NRRAITPPAPVSETSFSINRYKYVET 71
          F L+A +++LL L   L   +SR LH IHP    N+ ++  P P S   + INRYKY E+
Sbjct: 8  FSLVAGVVILLHLQMDLAEAASRQLH-IHPPPFPNKLSLRNPKPPSFILYGINRYKYTES 67

Query: 72 NAFRPTSPGHSPGVGHNEPPGRP 90
           AFRPTSPGHSPGVGH +PPG P
Sbjct: 68 EAFRPTSPGHSPGVGHKDPPGAP 89

BLAST of IVF0019773 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 31/74 (41.89%), Postives = 42/74 (56.76%), Query Frame = 0

Query: 17 LLLLLLLLHSLLVTSSR-PLHDIHPHNRRAITPPAPVSETS--FSINRYKYVETNAFRPT 76
          L LL+L LH    T++R P+    P +    +PP+P  +    F IN YK +E  AFRPT
Sbjct: 16 LFLLVLHLHFETTTAARKPVRVFGPPSSIEWSPPSPPKDDFEWFEINIYKNIEQTAFRPT 75

Query: 77 SPGHSPGVGHNEPP 88
            G S G+GH +PP
Sbjct: 76 GQGPSQGIGHKDPP 89

BLAST of IVF0019773 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.6e-05
Identity = 22/47 (46.81%), Postives = 28/47 (59.57%), Query Frame = 0

Query: 47 TPPAPVSET---SFSINRYKYVETNAFRPTSPGHSPGVGHNEPPGRP 91
          +PP P  +       INR+K +E +AFRPT  G S G+GH  PPG P
Sbjct: 40 SPPEPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0DN995.4e-0642.86Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1[more]
Q3EBM65.0e-0446.81Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KWX05.2e-3689.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1[more]
W9S8548.3e-1053.95Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1[more]
A0A2C9UJ231.1e-0953.01Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=... [more]
A0A2C9U3U81.9e-0950.55Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G001300 PE=3 SV=... [more]
A0A5C7HCP52.4e-0950.60Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019865 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
KAG6591857.11.57e-2661.62Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6608019.12.39e-1963.64Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF8033451.12.43e-1556.96hypothetical protein BT93_D2151 [Corymbia citriodora subsp. variegata][more]
EXC31035.13.36e-1556.16hypothetical protein L484_021337 [Morus notabilis][more]
OAY29952.11.32e-1453.01hypothetical protein MANES_15G184800v8 [Manihot esculenta][more]
Match NameE-valueIdentityDescription
AT1G31670.15.5e-0641.89Copper amine oxidase family protein [more]
AT2G35612.13.6e-0546.81FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54
NoneNo IPR availablePANTHERPTHR33348:SF20PRECURSOR OF CEP4coord: 11..88
IPR033250C-terminally encoded peptidePANTHERPTHR33348PRECURSOR OF CEP5coord: 11..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019773.1IVF0019773.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050793 regulation of developmental process
biological_process GO:0048364 root development