IVF0019305 (gene) Melon (IVF77) v1

Overview
NameIVF0019305
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr11: 4548020 .. 4549105 (-)
RNA-Seq ExpressionIVF0019305
SyntenyIVF0019305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTCGTAACCCAAATTCCATGTGCCACTTCACCCTCAAATTCTATCAACCTTCCCTATATAAATCTTCTCCACACCCTTTCTCAAAATTCCATTTTACATAAAGAAAAGAAAAAAAAAATAGTAAAGTAAAAATGTCGGCAATGGTAGAGTCATGGATGAACGAACTTGGAAAATGGAAAAACAGAGTTGAAGCTCAAAACAACAACAACAACAACAACAACAACAACAAGCCATTGATGCCCAAATCCAATCAACTCCAAACAGATCACTTCAAACAACCTCCCAAAACCCACATCCCGGATTCCGACGACACAGATACCTCCGTCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGCTTTGCTCCTTTGTGATTATGCTCTCTTTCAATAATTCCTCTTCCTCTTTTCATTTTTACTCTGTATATTGATGAATATATATCTAATGTAATTGTAAAGGAAACAGTAATCTAGTTTTGTCCACTGCCACCTTGTACGGCTGCCGGCTGGTGCTGCTTGTGATGCTCTGTTTGTTTCAACAATTCCTCTGTCCTGTGTTTTCCTTTGTAATTCTATGTTGAATTGAATCTATGTTAGGGTATGGGAAGTCAATTAATGATCTGTACTTTTCTCACCGCCGTAGCCAGATTGAAGAGAGGAGGAGTACGGGGGTGGTAGCCACTGGCGGATCTAGCATAGGCCGGGGGGGCTCGAGCCCCCTCTCAACTTTATTGCTATTATATAATATATATAAAAAATGCTACTTAATTTCAATATTTACTATTAGCTTAGTGGTTGCTGTGATTGTCAGCCCCCCTTCCACCTAGGTTCAAATCTTACCTATGTAATTTATTTTTCATATTTTTCTTCCAGCCCCCCGTCAATATATTTTCTAGATCCGCCACTGGTGGTAGCGGCGGGGACGGTGGTGGCCGGTTTGGAAACTTTCTGGCTTTCTGCTTTTCAATTAGGCCTTGTAAAATTTGTGTCTATATTTCTTTAATCATTTTTTCTAATTAATAACATTTTGCTCTTCTCTTTTATTGTTTAGTTTCTATTTTTTTAAAAAAAAATCAAGTGA

mRNA sequence

ATATTCGTAACCCAAATTCCATGTGCCACTTCACCCTCAAATTCTATCAACCTTCCCTATATAAATCTTCTCCACACCCTTTCTCAAAATTCCATTTTACATAAAGAAAAGAAAAAAAAAATAGTAAAGTAAAAATGTCGGCAATGGTAGAGTCATGGATGAACGAACTTGGAAAATGGAAAAACAGAGTTGAAGCTCAAAACAACAACAACAACAACAACAACAACAACAAGCCATTGATGCCCAAATCCAATCAACTCCAAACAGATCACTTCAAACAACCTCCCAAAACCCACATCCCGGATTCCGACGACACAGATACCTCCGTCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGCTTTGCTCCTTTGTGATTATGCTCTCTTTCAATAATTCCTCTTCCTCTTTTCATTTTTACTCTGTATATTGATGAATATATATCTAATGTAATTGTAAAGGAAACAGTAATCTAGTTTTGTCCACTGCCACCTTGTACGGCTGCCGGCTGGTGCTGCTTGTGATGCTCTGTTTGTTTCAACAATTCCTCTGTCCTGTGTTTTCCTTTGTAATTCTATGTTGAATTGAATCTATGTTAGGGTATGGGAAGTCAATTAATGATCTGTACTTTTCTCACCGCCGTAGCCAGATTGAAGAGAGGAGGAGTACGGGGGTGGTAGCCACTGGCGGATCTAGCATAGGCCGGGGGGGCTCGAGCCCCCTCTCAACTTTATTGCTATTATATAATATATATAAAAAATGCTACTTAATTTCAATATTTACTATTAGCTTAGTGGTTGCTGTGATTGTCAGCCCCCCTTCCACCTAGGTTCAAATCTTACCTATGTAATTTATTTTTCATATTTTTCTTCCAGCCCCCCGTCAATATATTTTCTAGATCCGCCACTGGTGGTAGCGGCGGGGACGGTGGTGGCCGGTTTGGAAACTTTCTGGCTTTCTGCTTTTCAATTAGGCCTTGTAAAATTTGTGTCTATATTTCTTTAATCATTTTTTCTAATTAATAACATTTTGCTCTTCTCTTTTATTGTTTAGTTTCTATTTTTTTAAAAAAAAATCAAGTGA

Coding sequence (CDS)

ATGTCGGCAATGGTAGAGTCATGGATGAACGAACTTGGAAAATGGAAAAACAGAGTTGAAGCTCAAAACAACAACAACAACAACAACAACAACAACAAGCCATTGATGCCCAAATCCAATCAACTCCAAACAGATCACTTCAAACAACCTCCCAAAACCCACATCCCGGATTCCGACGACACAGATACCTCCGTCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGCTTTGCTCCTTTGTGA

Protein sequence

MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKSNQLQTDHFKQPPKTHIPDSDDTDTSVLSESTICLLIDRFAPL
Homology
BLAST of IVF0019305 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.0e-27
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKSNQLQTDHFKQPPKTHIPDSDD 60
           MSAMVESWMNELGKW+NRVEAQ     +NNN KPLMPKS QLQTDHFKQP KTH+ DSDD
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQ-----DNNNKKPLMPKSKQLQTDHFKQPAKTHMADSDD 96

Query: 61  TDTSVLSESTICLLIDRFAPL 82
           T+TSVLSESTICLLIDRFAPL
Sbjct: 97  TETSVLSESTICLLIDRFAPL 112

BLAST of IVF0019305 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 130 bits (328), Expect = 2.68e-37
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1   MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKSNQLQTDHFKQPPKTHIPDSDD 60
           MSAMVESWMNELGKW+NRVEAQ+NNN      KPLMPKS QLQTDHFKQP KTH+ DSDD
Sbjct: 37  MSAMVESWMNELGKWRNRVEAQDNNNK-----KPLMPKSKQLQTDHFKQPAKTHMADSDD 96

Query: 61  TDTSVLSESTICLLIDRFAPL 81
           T+TSVLSESTICLLIDRFAPL
Sbjct: 97  TETSVLSESTICLLIDRFAPL 112

BLAST of IVF0019305 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 1.44e-16
Identity = 51/81 (62.96%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 1  MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKSNQ-LQTDHFKQPPKTHIPDSD 60
          MSAMVESWM+ELGKWKNRVEAQ          KPLMPKSNQ LQ D        H   SD
Sbjct: 1  MSAMVESWMSELGKWKNRVEAQKKK-------KPLMPKSNQFLQNDVVS----AH---SD 60

Query: 61 DTDTSVLSESTICLLIDRFAP 80
          DT+T    E+TICLLIDRFAP
Sbjct: 61 DTETERERETTICLLIDRFAP 67

BLAST of IVF0019305 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 5.82e-08
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 1  MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKSNQLQTDHFKQPPKTHI--PDS 60
          M+AMVESWM+ELGKWKNRVEAQ          KPLMPKS        K+     +   DS
Sbjct: 1  MAAMVESWMSELGKWKNRVEAQKK--------KPLMPKSKLCHQRDLKESENNLVISADS 60

Query: 61 DDTDTSVLSESTICLLID 76
          DD + + LS+STI  + D
Sbjct: 61 DDREAT-LSDSTILCVND 69

BLAST of IVF0019305 vs. NCBI nr
Match: KAE8008438.1 (hypothetical protein FH972_004952 [Carpinus fangiana])

HSP 1 Score: 49.3 bits (116), Expect = 1.60e-05
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 1  MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKSNQL-QTDHFKQPPK-THIPDS 60
          MSA+VE+WM +L K   +V+A+          KPL  K+ +  + +  K+  K + +   
Sbjct: 1  MSAVVETWMGQLAKLGEKVKAR----------KPLFSKAKKGGEVEEAKEGVKESRVVQR 60

Query: 61 DDTDTSVLSESTICLLIDRFAP 80
          D+ +T++LSE+T+CLL+DRFAP
Sbjct: 61 DNNNTAMLSEATVCLLMDRFAP 72

BLAST of IVF0019305 vs. NCBI nr
Match: KAF7840895.1 (hypothetical protein G2W53_003193 [Senna tora])

HSP 1 Score: 47.8 bits (112), Expect = 6.58e-05
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 1  MSAMVESWMNELGKWKNRVEAQNNNNNNNNNNKPLMPKS---NQLQTDHFKQPPKTHIPD 60
          MSAM E WM EL K K++V ++          KP + K    ++++    K+  K    +
Sbjct: 1  MSAMAEIWMGELAKLKDKVLSR----------KPFISKGQERSEVEQTVKKEAAKKQNRE 60

Query: 61 SDDTDTSVLSESTICLLIDRFAP 80
              DTS+LSEST+CLL+DRF P
Sbjct: 61 IIHRDTSMLSESTVCLLMDRFVP 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP243.0e-2783.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN61756.12.68e-3783.95hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6571144.11.44e-1662.96hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605111.15.82e-0848.72hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8008438.11.60e-0537.80hypothetical protein FH972_004952 [Carpinus fangiana][more]
KAF7840895.16.58e-0538.55hypothetical protein G2W53_003193 [Senna tora][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..65
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 1..81
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019305.2IVF0019305.2mRNA