IVF0018954 (gene) Melon (IVF77) v1

Overview
NameIVF0018954
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionFlocculation protein FLO11-like
Locationchr08: 15631339 .. 15631560 (-)
RNA-Seq ExpressionIVF0018954
SyntenyIVF0018954
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGGAGAAAACGGCAACGATCGGTTGGTGGAGGGAGAAAATTTTATACGGCTGAGGTCGGAGGGCTGTGACTGGTGGGTGGCAGACGGAGCAACGGCTAAGGTATGCGAGTGGTGGAGGGCGGCAGGAGACGACGGCGGAGATTGGATTGAGAGAGACGGCGTCGGAGGGCAGGGAGGCGGCGCAAATGGCCAACTAGTTAGGGATTTGTTTTGA

mRNA sequence

ATGGTGGAGGGAGAAAACGGCAACGATCGGTTGGTGGAGGGAGAAAATTTTATACGGCTGAGGTCGGAGGGCTGTGACTGGTGGGTGGCAGACGGAGCAACGGCTAAGGTATGCGAGTGGTGGAGGGCGGCAGGAGACGACGGCGGAGATTGGATTGAGAGAGACGGCGTCGGAGGGCAGGGAGGCGGCGCAAATGGCCAACTAGTTAGGGATTTGTTTTGA

Coding sequence (CDS)

ATGGTGGAGGGAGAAAACGGCAACGATCGGTTGGTGGAGGGAGAAAATTTTATACGGCTGAGGTCGGAGGGCTGTGACTGGTGGGTGGCAGACGGAGCAACGGCTAAGGTATGCGAGTGGTGGAGGGCGGCAGGAGACGACGGCGGAGATTGGATTGAGAGAGACGGCGTCGGAGGGCAGGGAGGCGGCGCAAATGGCCAACTAGTTAGGGATTTGTTTTGA

Protein sequence

MVEGENGNDRLVEGENFIRLRSEGCDWWVADGATAKVCEWWRAAGDDGGDWIERDGVGGQGGGANGQLVRDLF
Homology
BLAST of IVF0018954 vs. ExPASy TrEMBL
Match: A0A5D3CFS1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00030 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 0

Query: 1  MVEGENGNDRLVEGENFIRLRSEGCDWWVADGATAKVCEWWRAAGDDGGDWIERDGVGGQ 60
          MVEGENGNDRLVEGEN IRLRSEGC+WWVADGATAKVCEWWRAAGD+GGDWIERDGVGG 
Sbjct: 1  MVEGENGNDRLVEGENCIRLRSEGCEWWVADGATAKVCEWWRAAGDNGGDWIERDGVGGS 60

Query: 61 GGGAN 66
              N
Sbjct: 61 EKDVN 65

BLAST of IVF0018954 vs. ExPASy TrEMBL
Match: A0A5A7TIR1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001800 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-05
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 34 TAKVCEWWRAAGDDGGDWIERDGVGGQ 61
          T KVCEWWRA GDDGGDWIERDGV G+
Sbjct: 19 TTKVCEWWRAEGDDGGDWIERDGVEGR 45

BLAST of IVF0018954 vs. ExPASy TrEMBL
Match: A0A5D3CLW1 (Sulfiredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00580 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0

Query: 34  TAKVCEWWRAAGDDGGDWIERDGVGGQGGGANG 67
           TA+VCEWW   GDD  DWI+RDGVG Q GGANG
Sbjct: 177 TAEVCEWWMTEGDDDDDWIKRDGVGRQRGGANG 209

BLAST of IVF0018954 vs. NCBI nr
Match: KAA0048296.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK10641.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.71e-33
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 1  MVEGENGNDRLVEGENFIRLRSEGCDWWVADGATAKVCEWWRAAGDDGGDWIERDGVGG 59
          MVEGENGNDRLVEGEN IRLRSEGC+WWVADGATAKVCEWWRAAGD+GGDWIERDGVGG
Sbjct: 1  MVEGENGNDRLVEGENCIRLRSEGCEWWVADGATAKVCEWWRAAGDNGGDWIERDGVGG 59

BLAST of IVF0018954 vs. NCBI nr
Match: KAA0041521.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK24394.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 6.24e-08
Identity = 29/50 (58.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 11 LVEGENFIRLRSEGCDWWVADGATAKVCEWWRAAGDDGGDWIERDGVGGQ 60
          +V+G    RLRS           T KVCEWWRA GDDGGDWIERDGV G+
Sbjct: 4  MVDGGGRKRLRSIE--------TTTKVCEWWRAEGDDGGDWIERDGVEGR 45

BLAST of IVF0018954 vs. NCBI nr
Match: KAA0043173.1 (sulfiredoxin [Cucumis melo var. makuwa] >TYK12292.1 sulfiredoxin [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 1.96e-06
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 0

Query: 18  IRLRSEGCDWWVADGATAKVCEWWRAAGDDGGDWIERDGVGGQGGGANG 66
            RL       W  +  TA+VCEWW   GDD  DWI+RDGVG Q GGANG
Sbjct: 162 FRLELSASGGWRRE-TTAEVCEWWMTEGDDDDDWIKRDGVGRQRGGANG 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFS12.0e-2587.69Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TIR18.5e-0585.19Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3CLW13.2e-0472.73Sulfiredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00580 P... [more]
Match NameE-valueIdentityDescription
KAA0048296.12.71e-3394.92putative mitochondrial protein [Cucumis melo var. makuwa] >TYK10641.1 putative m... [more]
KAA0041521.16.24e-0858.00flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK24394.1 flocculat... [more]
KAA0043173.11.96e-0655.10sulfiredoxin [Cucumis melo var. makuwa] >TYK12292.1 sulfiredoxin [Cucumis melo v... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018954.1IVF0018954.1mRNA