IVF0018807 (gene) Melon (IVF77) v1

Overview


Name	IVF0018807
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit alpha, chloroplastic
Location	chr07: 23901200 .. 23901376 (+)
RNA-Seq Expression	IVF0018807
Synteny	IVF0018807

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCTCTGATTTTGAGATCATTGTTAGACTCTCGTTTAATTGAATCCCCCGCTCCTGGTATTATTTTGAGACGTTTCGTATACGAGCATCTTCAAACAGGACTTATTGCTATTGATTCAATGATTCCTATCGGACGTGGTCATCGAGAATTAATTATACCCTGTTTTGACTGA

mRNA sequence

ATGGAATCTCTGATTTTGAGATCATTGTTAGACTCTCGTTTAATTGAATCCCCCGCTCCTGGTATTATTTTGAGACGTTTCGTATACGAGCATCTTCAAACAGGACTTATTGCTATTGATTCAATGATTCCTATCGGACGTGGTCATCGAGAATTAATTATACCCTGTTTTGACTGA

Coding sequence (CDS)

ATGGAATCTCTGATTTTGAGATCATTGTTAGACTCTCGTTTAATTGAATCCCCCGCTCCTGGTATTATTTTGAGACGTTTCGTATACGAGCATCTTCAAACAGGACTTATTGCTATTGATTCAATGATTCCTATCGGACGTGGTCATCGAGAATTAATTATACCCTGTTTTGACTGA

Protein sequence

MESLILRSLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELIIPCFD

Homology

[Close]

BLAST of IVF0018807 vs. ExPASy Swiss-Prot
Match: Q2QDA3 (ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus OX=3659 GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-15
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           DSRLIESPAPGIILRR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 126 DSRLIESPAPGIILRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy Swiss-Prot
Match: A6MMA7 (ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus OX=13006 GN=atpA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SAYESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy Swiss-Prot
Match: A4QJA0 (ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atpA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy Swiss-Prot
Match: A4QJI4 (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy Swiss-Prot
Match: Q70XV0 (ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda OX=13333 GN=atpA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 126 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy TrEMBL
Match: A0A7J6HYW8 (Photosystem II protein D1 OS=Cannabis sativa OX=3483 GN=F8388_021192 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-13
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RRFVYE LQTGLIAIDSMIPIGRGHRELII
Sbjct: 118 STSESRLIESPAPGIISRRFVYEPLQTGLIAIDSMIPIGRGHRELII 164

[Close]

BLAST of IVF0018807 vs. ExPASy TrEMBL
Match: A0A650BJC5 (ATP synthase subunit alpha, chloroplastic OS=Ormosia hosiei OX=1642859 GN=atpA PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.8e-13
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S L+SRLIESPAPGIILRR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SALESRLIESPAPGIILRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy TrEMBL
Match: A0A1I9VXB2 (ATP synthase subunit alpha, chloroplastic OS=Salpinga maranonensis OX=1170341 GN=atpA PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.8e-13
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S L+SRLIESPAPGIILRR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 STLESRLIESPAPGIILRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy TrEMBL
Match: A0A218KG35 (ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           DSRLIESPAPGIILRR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 126 DSRLIESPAPGIILRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. ExPASy TrEMBL
Match: A0A1X9Q1B0 (ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus OX=3659 GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           DSRLIESPAPGIILRR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 126 DSRLIESPAPGIILRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. NCBI nr
Match: GFQ08748.1 (ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum])

HSP 1 Score: 78.2 bits (191), Expect = 2.72e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 15 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 58

[Close]

BLAST of IVF0018807 vs. NCBI nr
Match: KAF4381564.1 (hypothetical protein F8388_021192 [Cannabis sativa] >KAF4399908.1 hypothetical protein G4B88_021122 [Cannabis sativa])

HSP 1 Score: 84.3 bits (207), Expect = 3.66e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
           +SRLIESPAPGII RRFVYE LQTGLIAIDSMIPIGRGHRELII
Sbjct: 121 ESRLIESPAPGIISRRFVYEPLQTGLIAIDSMIPIGRGHRELII 164

[Close]

BLAST of IVF0018807 vs. NCBI nr
Match: GFP81799.1 (ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum])

HSP 1 Score: 78.2 bits (191), Expect = 5.14e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 39 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 82

[Close]

BLAST of IVF0018807 vs. NCBI nr
Match: MBN8156921.1 (F0F1 ATP synthase subunit alpha [Vibrio vulnificus])

HSP 1 Score: 78.2 bits (191), Expect = 5.14e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 42 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 85

[Close]

BLAST of IVF0018807 vs. NCBI nr
Match: AAN86913.1 (ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN87786.1 ATPase alpha subunit, partial [Arabidopsis suecica] >AAN86914.1 ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN86915.1 ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN86916.1 ATPase alpha subunit, partial [Arabidopsis thaliana])

HSP 1 Score: 78.2 bits (191), Expect = 8.02e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 10 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 53

[Close]

BLAST of IVF0018807 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-15
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]

BLAST of IVF0018807 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-09
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           + R +E  APGI+ R+ V+E +QTGL A+DS++PIGRG REL+I
Sbjct: 397 EQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLI 440

[Close]

BLAST of IVF0018807 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-09
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           + R +E  APGI+ R+ V+E +QTGL A+DS++PIGRG REL+I
Sbjct: 127 EQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLI 170

The following BLAST results are available for this feature:

BLAST of IVF0018807 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QDA3	3.1e-15	93.18	ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus OX=3659 GN=atpA PE=...	[more]
A6MMA7	3.4e-14	85.11	ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus OX=13006 GN=at...	[more]
A4QJA0	4.5e-14	85.11	ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN...	[more]
A4QJI4	4.5e-14	85.11	ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN...	[more]
Q70XV0	4.5e-14	88.64	ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda OX=13333 GN=at...	[more]

BLAST of IVF0018807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HYW8	2.3e-13	89.36	Photosystem II protein D1 OS=Cannabis sativa OX=3483 GN=F8388_021192 PE=3 SV=1	[more]
A0A650BJC5	6.8e-13	89.36	ATP synthase subunit alpha, chloroplastic OS=Ormosia hosiei OX=1642859 GN=atpA P...	[more]
A0A1I9VXB2	6.8e-13	89.36	ATP synthase subunit alpha, chloroplastic OS=Salpinga maranonensis OX=1170341 GN...	[more]
A0A218KG35	1.2e-12	93.18	ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A1X9Q1B0	1.2e-12	93.18	ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus OX=3659 GN=atpA PE=...	[more]

BLAST of IVF0018807 vs. NCBI nr


Match Name	E-value	Identity	Description
GFQ08748.1	2.72e-17	88.64	ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum]	[more]
KAF4381564.1	3.66e-17	93.18	hypothetical protein F8388_021192 [Cannabis sativa] >KAF4399908.1 hypothetical p...	[more]
GFP81799.1	5.14e-17	88.64	ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum]	[more]
MBN8156921.1	5.14e-17	88.64	F0F1 ATP synthase subunit alpha [Vibrio vulnificus]	[more]
AAN86913.1	8.02e-17	88.64	ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN87786.1 ATPase alpha su...	[more]

BLAST of IVF0018807 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00120.1	3.2e-15	85.11	ATP synthase subunit alpha	[more]
AT2G07698.1	3.4e-09	56.82	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	3.4e-09	56.82	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12240		coord: 8..56 e-value: 8.1E-11 score: 43.1
None	No IPR available	PANTHER	PTHR48082:SF6	ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC	coord: 11..54
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 11..54
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018807.1	IVF0018807.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism