IVF0018202 (gene) Melon (IVF77) v1

Overview


Name	IVF0018202
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr04: 22951682 .. 22952059 (+)
RNA-Seq Expression	IVF0018202
Synteny	IVF0018202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTACTTCACGGAACGATTCTTGTCTGAAGTTCGACATCTCGTAATACTTTCTGACAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGACGCCATGGGCTGGTGCTTTTGCAGATCATTGGCCACGCTTAGATAATAACTCAGTTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTGGTAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTTTGCTTTACTGACTGTTATTGGGAGTGGTTGGAGCTTGTAGTTGGTTGA

mRNA sequence

ATGGTTTACTTCACGGAACGATTCTTGTCTGAAGTTCGACATCTCGTAATACTTTCTGACAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGACGCCATGGGCTGGTGCTTTTGCAGATCATTGGCCACGCTTAGATAATAACTCAGTTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTGGTAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTTTGCTTTACTGACTGTTATTGGGAGTGGTTGGAGCTTGTAGTTGGTTGA

Coding sequence (CDS)

ATGGTTTACTTCACGGAACGATTCTTGTCTGAAGTTCGACATCTCGTAATACTTTCTGACAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGACGCCATGGGCTGGTGCTTTTGCAGATCATTGGCCACGCTTAGATAATAACTCAGTTCTTCCCAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCCTAATTCTGGTAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTTTGCTTTACTGACTGTTATTGGGAGTGGTTGGAGCTTGTAGTTGGTTGA

Protein sequence

MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVEIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWLELVVG

Homology

[Close]

BLAST of IVF0018202 vs. ExPASy TrEMBL
Match: A0A5A7TZ08 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00990 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.4e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 119

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 120 IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 179

Query: 121 ELVVG 126
           ELVVG
Sbjct: 180 ELVVG 184

[Close]

BLAST of IVF0018202 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.0e-67
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           +PLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVG 126
           ELVVG
Sbjct: 121 ELVVG 125

[Close]

BLAST of IVF0018202 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.0e-67
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           IPLSEGKSAW+LQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVG 126
           ELVVG
Sbjct: 121 ELVVG 125

[Close]

BLAST of IVF0018202 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66
Identity = 120/125 (96.00%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLI+E PWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           IPLSEGKSAW+LQSSIHNEAPNSGRALTLGQRLIEGQTRWGT+TKVPGEFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVG 126
           ELVVG
Sbjct: 121 ELVVG 125

[Close]

BLAST of IVF0018202 vs. ExPASy TrEMBL
Match: A0A5A7TFC8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00910 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 8.7e-66
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE  WAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 76

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           +PLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 77  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 136

Query: 121 ELVVG 126
           ELVVG
Sbjct: 137 ELVVG 141

[Close]

BLAST of IVF0018202 vs. NCBI nr
Match: KAA0048380.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (677), Expect = 1.11e-88
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 119

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 120 IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 179

Query: 121 ELVVG 125
           ELVVG
Sbjct: 180 ELVVG 184

[Close]

BLAST of IVF0018202 vs. NCBI nr
Match: KAA0057574.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 255 bits (652), Expect = 1.67e-85
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 76

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           +PLSEGKSAWVLQSSIHNEA NSG+ALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 77  VPLSEGKSAWVLQSSIHNEASNSGKALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 136

Query: 121 ELVVG 125
           ELVVG
Sbjct: 137 ELVVG 141

[Close]

BLAST of IVF0018202 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (663), Expect = 2.84e-83
Identity = 122/125 (97.60%), Postives = 123/125 (98.40%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFADHWPRLDNNSVLPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           IPLSEGKSAW+LQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVG 125
           ELVVG
Sbjct: 121 ELVVG 125

[Close]

BLAST of IVF0018202 vs. NCBI nr
Match: KAA0061098.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03768.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 244 bits (624), Expect = 5.00e-80
Identity = 116/125 (92.80%), Postives = 117/125 (93.60%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQ REDGLSLIVE PWAG FADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQSREDGLSLIVEKPWAGTFADHWPRLDNNSVLSRLSVE 60

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           IPLSEGKSAWVLQS IH+EAPNSGRALT GQRLIEGQT WGTVTKVPGEFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWVLQSFIHDEAPNSGRALTFGQRLIEGQTHWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVG 125
           ELVVG
Sbjct: 121 ELVVG 125

[Close]

BLAST of IVF0018202 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 248 bits (634), Expect = 4.41e-79
Identity = 118/125 (94.40%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 60
           MVYFTERFLS VRHLVILSDRNQPREDGLSLIVE PWAGAFA+HWPRLDNNSVLPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFANHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120
           + LSEGKSAWVLQSSIH EAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCF DCYWEWL
Sbjct: 61  VHLSEGKSAWVLQSSIHIEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFIDCYWEWL 120

Query: 121 ELVVG 125
           ELVVG
Sbjct: 121 ELVVG 125

The following BLAST results are available for this feature:

BLAST of IVF0018202 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018202 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZ08	1.4e-68	100.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TX42	6.0e-67	97.60	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UET3	6.0e-67	97.60	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7U8L3	3.0e-66	96.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TFC8	8.7e-66	96.80	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0018202 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048380.1	1.11e-88	100.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0057574.1	1.67e-85	96.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0053734.1	2.84e-83	97.60	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0061098.1	5.00e-80	92.80	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03768.1 putative m...	[more]
TYK20969.1	4.41e-79	94.40	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018202 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018202.1	IVF0018202.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane