IVF0018071 (gene) Melon (IVF77) v1

Overview


Name	IVF0018071
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Stress response protein NST1-like
Location	chr01: 6056950 .. 6057120 (-)
RNA-Seq Expression	IVF0018071
Synteny	IVF0018071

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTTTGTTGGACATGGTTAAAAAGTTTTATGATATGAAGTACAACCCAACTGAGTCTTATGTACTGATAGAAGGTGAAAAGGTTTACTTTAATACCGAGACCATCAACAATTTATACGACTTGCCCAATGACGAGGAGACCCCAGAGCATACGTTGATCACTTAA

mRNA sequence

ATGAAAATTTTGTTGGACATGGTTAAAAAGTTTTATGATATGAAGTACAACCCAACTGAGTCTTATGTACTGATAGAAGGTGAAAAGGTTTACTTTAATACCGAGACCATCAACAATTTATACGACTTGCCCAATGACGAGGAGACCCCAGAGCATACGTTGATCACTTAA

Coding sequence (CDS)

ATGAAAATTTTGTTGGACATGGTTAAAAAGTTTTATGATATGAAGTACAACCCAACTGAGTCTTATGTACTGATAGAAGGTGAAAAGGTTTACTTTAATACCGAGACCATCAACAATTTATACGACTTGCCCAATGACGAGGAGACCCCAGAGCATACGTTGATCACTTAA

Protein sequence

MKILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT

Homology

[Close]

BLAST of IVF0018071 vs. ExPASy TrEMBL
Match: A0A5A7U8H4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00470 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-11
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 2  KILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 57
          K+ LD+VKKFYD KY+PT+ Y  IE EK+YF+ E IN LYDLPND E P H +IT
Sbjct: 39 KVRLDVVKKFYDAKYHPTDLYATIESEKIYFHAEAINKLYDLPNDIEYPGHGIIT 93

[Close]

BLAST of IVF0018071 vs. ExPASy TrEMBL
Match: A0A5D3E5P6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001650 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5  LDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 57
          +++V KFYD  Y+P+E YV IEG+KV+F+TE IN LYDLPND E P   +IT
Sbjct: 1  MEVVSKFYDASYHPSEFYVTIEGKKVFFDTEAINELYDLPNDAEYPRQAMIT 52

[Close]

BLAST of IVF0018071 vs. ExPASy TrEMBL
Match: A0A5A7T079 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002700 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-09
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5  LDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 57
          +++V KFYD  Y+P+E YV IEG+KV+F+TE IN LYDLPND E P   +IT
Sbjct: 1  MEVVSKFYDASYHPSEFYVTIEGKKVFFDTEAINELYDLPNDAEYPRQAMIT 52

[Close]

BLAST of IVF0018071 vs. ExPASy TrEMBL
Match: A0A5A7URT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00140 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 2   KILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 57
           KI L +V+KFY    N  E YV+++G+ +YFN E IN LYDLP D ETPE  LIT
Sbjct: 61  KIRLKVVRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALIT 115

[Close]

BLAST of IVF0018071 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1  MKILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 57
          MKI +D+V KFYD+K+NP++ ++ IE EK YFN E IN LY+ PND E     ++T
Sbjct: 1  MKIRMDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVT 56

[Close]

BLAST of IVF0018071 vs. NCBI nr
Match: KAA0049901.1 (hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa] >TYK07644.1 hypothetical protein E5676_scaffold105G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.76e-16
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 2  KILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 56
          K+ LD+VKKFYD KY+PT+ Y  IE EK+YF+ E IN LYDLPND E P H +IT
Sbjct: 39 KVRLDVVKKFYDAKYHPTDLYATIESEKIYFHAEAINKLYDLPNDIEYPGHGIIT 93

[Close]

BLAST of IVF0018071 vs. NCBI nr
Match: TYK30940.1 (hypothetical protein E5676_scaffold455G001650 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.47e-13
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5  LDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 56
          +++V KFYD  Y+P+E YV IEG+KV+F+TE IN LYDLPND E P   +IT
Sbjct: 1  MEVVSKFYDASYHPSEFYVTIEGKKVFFDTEAINELYDLPNDAEYPRQAMIT 52

[Close]

BLAST of IVF0018071 vs. NCBI nr
Match: KAA0035596.1 (hypothetical protein E6C27_scaffold285G002700 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.45e-13
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 5  LDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 56
          +++V KFYD  Y+P+E YV IEG+KV+F+TE IN LYDLPND E P   +IT
Sbjct: 1  MEVVSKFYDASYHPSEFYVTIEGKKVFFDTEAINELYDLPNDAEYPRQAMIT 52

[Close]

BLAST of IVF0018071 vs. NCBI nr
Match: KAA0057357.1 (hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK30046.1 hypothetical protein E5676_scaffold216G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.80e-11
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 2   KILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 56
           KI L +V+KFY    N  E YV+++G+ +YFN E IN LYDLP D ETPE  LIT
Sbjct: 61  KIRLKVVRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALIT 115

[Close]

BLAST of IVF0018071 vs. NCBI nr
Match: KAA0050753.1 (hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 2.08e-10
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 2   KILLDMVKKFYDMKYNPTESYVLIEGEKVYFNTETINNLYDLPNDEETPEHTLIT 56
           KI L +++KFY    N  E YV+++G+ +YFN E IN LYDLP D +TPE  LIT
Sbjct: 104 KIRLKVIRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAKTPEQALIT 158

The following BLAST results are available for this feature:

BLAST of IVF0018071 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0018071 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8H4	6.1e-11	63.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E5P6	4.4e-09	59.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T079	4.4e-09	59.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7URT6	1.4e-07	56.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6M5	2.4e-07	51.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]

BLAST of IVF0018071 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049901.1	2.76e-16	63.64	hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa] >TYK07644...	[more]
TYK30940.1	1.47e-13	59.62	hypothetical protein E5676_scaffold455G001650 [Cucumis melo var. makuwa]	[more]
KAA0035596.1	2.45e-13	59.62	hypothetical protein E6C27_scaffold285G002700 [Cucumis melo var. makuwa]	[more]
KAA0057357.1	1.80e-11	56.36	hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK300...	[more]
KAA0050753.1	2.08e-10	52.73	hypothetical protein E6C27_scaffold46449G00020 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0018071 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0018071.2	IVF0018071.2	mRNA