IVF0018006 (gene) Melon (IVF77) v1

Overview
NameIVF0018006
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr01: 21441891 .. 21442423 (-)
RNA-Seq ExpressionIVF0018006
SyntenyIVF0018006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTCAGCCAAGAGGATCTTCATCTTCATCTTCTCAAATATGATGCAATCGAGAAGGTCGTCATCTCAAATGTGGTGCAGTCGAGACGATCATCATCTTCATCTTCATCTTCTCACATGTGTTGTAGCCCAGAGGGTTTTCATCTTCATTTTCTCACATGTGTTGCAGCCGAGAGGATTATCATCTTCATCTTCTCACATGTGTTGCGGTAAAGAGGATCTACATTTTTTATCTTCTCACATGTGTTGCAGTCGAGAAAGTTGTCGTCTCAAATATGTTACAGCCGAGAATGTCATCATCTCAAATATGTTGCAGTCGAGAAAGTCATCGTCTCAAATATGTTACAGTCAAGAATGCCGTCGTCTCAAATATGTTGTAGTCGAGAATGTCGTCGTCTCAAATATGTTGTAGTCGAGCAGATCGTCATCTCAAATATGTTGCAGTTGAGAAGGCAGTCGTCTCAAATATGTTGCGATCGAGAAGATCTTTGTTCTTACATATGTTATGGTCGAAAAGATCGTCGTCTTAA

mRNA sequence

ATGCGTTTCAGCCAAGAGGATCTTCATCTTCATCTTCTCAAATATGATGCAATCGAGAAGGTCGTCATCTCAAATGTGGTGCAGTCGAGACGATCATCATCTTCATCTTCATCTTCTCACATGTGTTGTAGCCCAGAGGTCGAGAAAGTTGTCGTCTCAAATATGTTACAGCCGAGAATGTCATCATCTCAAATATGTTGCAGTCGAGAAAGTCATCGTCTCAAATATGTTACATCGAGAATGTCGTCGTCTCAAATATGTTGTAGTCGAGCAGATCGTCATCTCAAATATGTTGCAGTTGAGAAGGCAGTCGTCTCAAATATGTTGCGATCGAGAAGATCTTTGTTCTTACATATGTTATGGTCGAAAAGATCGTCGTCTTAA

Coding sequence (CDS)

ATGCGTTTCAGCCAAGAGGATCTTCATCTTCATCTTCTCAAATATGATGCAATCGAGAAGGTCGTCATCTCAAATGTGGTGCAGTCGAGACGATCATCATCTTCATCTTCATCTTCTCACATGTGTTGTAGCCCAGAGGTCGAGAAAGTTGTCGTCTCAAATATGTTACAGCCGAGAATGTCATCATCTCAAATATGTTGCAGTCGAGAAAGTCATCGTCTCAAATATGTTACATCGAGAATGTCGTCGTCTCAAATATGTTGTAGTCGAGCAGATCGTCATCTCAAATATGTTGCAGTTGAGAAGGCAGTCGTCTCAAATATGTTGCGATCGAGAAGATCTTTGTTCTTACATATGTTATGGTCGAAAAGATCGTCGTCTTAA

Protein sequence

MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPEVEKVVVSNMLQPRMSSSQICCSRESHRLKYVTSRMSSSQICCSRADRHLKYVAVEKAVVSNMLRSRRSLFLHMLWSKRSSS
Homology
BLAST of IVF0018006 vs. ExPASy TrEMBL
Match: A0A5D3DBL7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold682G00230 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.6e-29
Identity = 83/139 (59.71%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 5   QEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNML 64
           +EDLHLHLLKYDA EKV+ISNVVQSRRSSSSSS SHM CS +         EK VVSNML
Sbjct: 238 REDLHLHLLKYDATEKVIISNVVQSRRSSSSSSFSHMHCSRKGLHLHLITSEKDVVSNML 297

Query: 65  QPRMSSSQICCSRESHRLKYVT-----------SRMSSSQICCSRADRHLKYVAVEKAVV 124
           QPRMSS QICC+RE HRLKYV            SRMS SQICCSR  R LKY+A EK VV
Sbjct: 298 QPRMSSFQICCNREGHRLKYVAVKNVVVSNMLKSRMSLSQICCSREGRRLKYIATEKIVV 357

BLAST of IVF0018006 vs. ExPASy TrEMBL
Match: A0A5A7VE10 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001670 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.0e-22
Identity = 73/131 (55.73%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 3   FSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSN 62
           + QE  H   LKY A+EKVV+SN++Q RR     SS  +CCS E        VEK+VVSN
Sbjct: 35  YRQEGRH---LKYVAVEKVVVSNMLQLRR-----SSFQICCSREGRRLKYVVVEKIVVSN 94

Query: 63  MLQPRMSSSQICCSRESHRLKYVT-----------SRMSSSQICCSRADRHLKYVAVEKA 115
           MLQ RMSSS ICCS+E  RLKYV            SR+SSSQICCS+  R LKY  VEK 
Sbjct: 95  MLQSRMSSSHICCSQECRRLKYVAIEKVIVSNMLQSRISSSQICCSQEYRRLKYTTVEKD 154

BLAST of IVF0018006 vs. ExPASy TrEMBL
Match: A0A5A7SQ83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00740 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 73/150 (48.67%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 1   MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE-------------- 60
           M  +QEDLHLHLLKY A +KV++S ++Q R      SSS +CC  E              
Sbjct: 163 MSCAQEDLHLHLLKYVAAKKVIVSYMLQPR-----MSSSQICCRREGCPLKYVAAEKIVV 222

Query: 61  -----VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS-----------RMSSSQICCSR 120
                 E V+VSNMLQPR SSSQICCS++  RLKY+ +           R SSS ICCSR
Sbjct: 223 LKYVAAEIVIVSNMLQPRRSSSQICCSQKDLRLKYIVATNVVVSDMLQPRKSSSHICCSR 282

BLAST of IVF0018006 vs. ExPASy TrEMBL
Match: A0A5D3C2C8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002110 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.4e-17
Identity = 64/133 (48.12%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 12  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSS 71
           +LKY A EK+++SN++Q RR     SSS +CCS +         EKVVVS +LQPRMSSS
Sbjct: 537 VLKYVAAEKIIVSNMLQPRR-----SSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSS 596

Query: 72  QICCSRESHRLKYVTS----------------------RMSSSQICCSRADRHLKYVAVE 115
           QICC RE   LKYV +                      R SSSQICCS+ D  LKY+  E
Sbjct: 597 QICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAE 656

BLAST of IVF0018006 vs. ExPASy TrEMBL
Match: A0A5A7UEK9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004640 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.4e-17
Identity = 64/133 (48.12%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 12  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSS 71
           +LKY A EK+++SN++Q RR     SSS +CCS +         EKVVVS +LQPRMSSS
Sbjct: 133 VLKYVAAEKIIVSNMLQPRR-----SSSQICCSQKDFCLKYIVAEKVVVSYILQPRMSSS 192

Query: 72  QICCSRESHRLKYVTS----------------------RMSSSQICCSRADRHLKYVAVE 115
           QICC RE   LKYV +                      R SSSQICCS+ D  LKY+  E
Sbjct: 193 QICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAE 252

BLAST of IVF0018006 vs. NCBI nr
Match: KAA0065363.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK20860.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 4.37e-36
Identity = 81/121 (66.94%), Postives = 86/121 (71.07%), Query Frame = 0

Query: 4   SQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNM 63
            +EDLHLHLLKYDA EKV+ISNVVQSRRSSSSSS SHM CS +         EK VVSNM
Sbjct: 237 QREDLHLHLLKYDATEKVIISNVVQSRRSSSSSSFSHMHCSRKGLHLHLITSEKDVVSNM 296

Query: 64  LQPRMSSSQICCSRESHRLKYVT-----------SRMSSSQICCSRADRHLKYVAVEKAV 105
           LQPRMSS QICC+RE HRLKYV            SRMS SQICCSR  R LKY+A EK V
Sbjct: 297 LQPRMSSFQICCNREGHRLKYVAVKNVVVSNMLKSRMSLSQICCSREGRRLKYIATEKIV 356

BLAST of IVF0018006 vs. NCBI nr
Match: KAA0066592.1 (hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 3.10e-29
Identity = 73/131 (55.73%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 3   FSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSN 62
           + QE  HL   KY A+EKVV+SN++Q RRSS       +CCS E        VEK+VVSN
Sbjct: 35  YRQEGRHL---KYVAVEKVVVSNMLQLRRSSF-----QICCSREGRRLKYVVVEKIVVSN 94

Query: 63  MLQPRMSSSQICCSRESHRLKYVT-----------SRMSSSQICCSRADRHLKYVAVEKA 114
           MLQ RMSSS ICCS+E  RLKYV            SR+SSSQICCS+  R LKY  VEK 
Sbjct: 95  MLQSRMSSSHICCSQECRRLKYVAIEKVIVSNMLQSRISSSQICCSQEYRRLKYTTVEKD 154

BLAST of IVF0018006 vs. NCBI nr
Match: KAA0032176.1 (hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa] >TYK14421.1 hypothetical protein E5676_scaffold186G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 1.48e-27
Identity = 73/150 (48.67%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 1   MRFSQEDLHLHLLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE-------------- 60
           M  +QEDLHLHLLKY A +KV++S ++Q R SSS      +CC  E              
Sbjct: 163 MSCAQEDLHLHLLKYVAAKKVIVSYMLQPRMSSS-----QICCRREGCPLKYVAAEKIVV 222

Query: 61  -----VEKVVVSNMLQPRMSSSQICCSRESHRLKYVTS-----------RMSSSQICCSR 120
                 E V+VSNMLQPR SSSQICCS++  RLKY+ +           R SSS ICCSR
Sbjct: 223 LKYVAAEIVIVSNMLQPRRSSSQICCSQKDLRLKYIVATNVVVSDMLQPRKSSSHICCSR 282

BLAST of IVF0018006 vs. NCBI nr
Match: KAA0051981.1 (hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.81e-21
Identity = 64/133 (48.12%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 12  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSS 71
           +LKY A EK+++SN++Q RRSSS      +CCS +         EKVVVS +LQPRMSSS
Sbjct: 133 VLKYVAAEKIIVSNMLQPRRSSS-----QICCSQKDFCLKYIVAEKVVVSYILQPRMSSS 192

Query: 72  QICCSRESHRLKYVTS----------------------RMSSSQICCSRADRHLKYVAVE 114
           QICC RE   LKYV +                      R SSSQICCS+ D  LKY+  E
Sbjct: 193 QICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAE 252

BLAST of IVF0018006 vs. NCBI nr
Match: TYK04576.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 7.75e-21
Identity = 64/133 (48.12%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 12  LLKYDAIEKVVISNVVQSRRSSSSSSSSHMCCSPE--------VEKVVVSNMLQPRMSSS 71
           +LKY A EK+++SN++Q RRSSS      +CCS +         EKVVVS +LQPRMSSS
Sbjct: 537 VLKYVAAEKIIVSNMLQPRRSSS-----QICCSQKDFCLKYIVAEKVVVSYILQPRMSSS 596

Query: 72  QICCSRESHRLKYVTS----------------------RMSSSQICCSRADRHLKYVAVE 114
           QICC RE   LKYV +                      R SSSQICCS+ D  LKY+  E
Sbjct: 597 QICCRREGRPLKYVATEKIIVLKYVAAEKIIVSNMLQPRRSSSQICCSQKDFCLKYIVAE 656

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DBL78.6e-2959.71Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VE106.0e-2255.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SQ831.3e-2148.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C2C83.4e-1748.12Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7UEK93.4e-1748.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0065363.14.37e-3666.94Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK20860.1 Retrotranspos... [more]
KAA0066592.13.10e-2955.73hypothetical protein E6C27_scaffold25G001670 [Cucumis melo var. makuwa][more]
KAA0032176.11.48e-2748.67hypothetical protein E6C27_scaffold452G00990 [Cucumis melo var. makuwa] >TYK1442... [more]
KAA0051981.11.81e-2148.12hypothetical protein E6C27_scaffold60G004640 [Cucumis melo var. makuwa][more]
TYK04576.17.75e-2148.12retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0018006.1IVF0018006.1mRNA