IVF0017896 (gene) Melon (IVF77) v1

Overview


Name	IVF0017896
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Serine/threonine-protein kinase TIO-like
Location	chr01: 14678795 .. 14679085 (+)
RNA-Seq Expression	IVF0017896
Synteny	IVF0017896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAACAGAAGTCACCAATATATAGAACTTTAGGAAATCTAATTCGTTGCCTAAGTGGCTTAAAGCCCAAACAATGGGACCTATCACTAGCTCAAGCTGAATTCGCCTCCAACAATATGAAAAATAGATCAACCGGGAGATGCCCCTTTGAGATTGTCTATACTAGAAGCCCAAGACTTACATTTAACTTAGCTAATCTACCATCAAATGTAGATATCAGCAATGAAGCAGAAAATATGATTGACAGAATACAAAATCTGCATAAAGAGGTACATGATCATCTGTAA

mRNA sequence

ATGACCAAACAGAAGTCACCAATATATAGAACTTTAGGAAATCTAATTCGTTGCCTAAGTGGCTTAAAGCCCAAACAATGGGACCTATCACTAGCTCAAGCTGAATTCGCCTCCAACAATATGAAAAATAGATCAACCGGGAGATGCCCCTTTGAGATTGTCTATACTAGAAGCCCAAGACTTACATTTAACTTAGCTAATCTACCATCAAATGTAGATATCAGCAATGAAGCAGAAAATATGATTGACAGAATACAAAATCTGCATAAAGAGGTACATGATCATCTGTAA

Coding sequence (CDS)

ATGACCAAACAGAAGTCACCAATATATAGAACTTTAGGAAATCTAATTCGTTGCCTAAGTGGCTTAAAGCCCAAACAATGGGACCTATCACTAGCTCAAGCTGAATTCGCCTCCAACAATATGAAAAATAGATCAACCGGGAGATGCCCCTTTGAGATTGTCTATACTAGAAGCCCAAGACTTACATTTAACTTAGCTAATCTACCATCAAATGTAGATATCAGCAATGAAGCAGAAAATATGATTGACAGAATACAAAATCTGCATAAAGAGGTACATGATCATCTGTAA

Protein sequence

MTKQKSPIYRTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLPSNVDISNEAENMIDRIQNLHKEVHDHL

Homology

[Close]

BLAST of IVF0017896 vs. ExPASy TrEMBL
Match: A0A5D3CLD7 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00340 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLI  LSG KPKQW+L+LAQAEF  NNMKNRSTGRCPFEIVY RSPRLTF+L+NLP
Sbjct: 77  RTLGNLICPLSGSKPKQWNLALAQAEFTFNNMKNRSTGRCPFEIVYARSPRLTFDLSNLP 136

Query: 70  SNVDISNEAENMIDRIQNLHKE 92
           SNVDISNE ENMIDRIQNLHKE
Sbjct: 137 SNVDISNEVENMIDRIQNLHKE 158

[Close]

BLAST of IVF0017896 vs. ExPASy TrEMBL
Match: A0A5A7TBM5 (UDP-glucose:glycoprotein glucosyltransferase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001080 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 7.0e-31
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 4   QKSPIYRTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTF 63
           Q   I RTL NLIRCL G KPKQWDL+LAQAEFA NNMKNRSTGRCPFEIVYTRSPRLTF
Sbjct: 555 QTEVINRTLENLIRCLGGSKPKQWDLALAQAEFAFNNMKNRSTGRCPFEIVYTRSPRLTF 614

Query: 64  NLANLPSNVDISNEAENMIDRIQ 87
           +LANLPS VDISNEAENMIDRI+
Sbjct: 615 DLANLPSIVDISNEAENMIDRIK 637

[Close]

BLAST of IVF0017896 vs. ExPASy TrEMBL
Match: A0A5D3BKX9 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00780 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLIRCLSG KPKQWDL+LAQAEFA NNMKNRSTG+CPF+IVYT+ PRLT +L +LP
Sbjct: 335 RTLGNLIRCLSGTKPKQWDLALAQAEFAFNNMKNRSTGKCPFKIVYTKQPRLTLDLTSLP 394

Query: 70  SNVDISNEAENMIDRIQNLHKEVHDHL 97
           + V++  EAE MI  I+ LHKEV+DHL
Sbjct: 395 TTVNLDKEAERMIGDIEKLHKEVYDHL 421

[Close]

BLAST of IVF0017896 vs. ExPASy TrEMBL
Match: A0A5A7UEM2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00700 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-29
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLIRCLSG KPKQWDLSLAQAEF  NNM+NRST +CPFEIVYT+ PRLTF+LA+L 
Sbjct: 258 RTLGNLIRCLSGSKPKQWDLSLAQAEFVFNNMRNRSTNKCPFEIVYTKQPRLTFDLASLL 317

Query: 70  SNVDISNEAENMIDRIQNLHKEVHDHL 97
           + VDI+ EAENM ++++ LHKEV DHL
Sbjct: 318 TVVDINQEAENMAEKLEQLHKEVIDHL 344

[Close]

BLAST of IVF0017896 vs. ExPASy TrEMBL
Match: A0A5A7UHK1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00380 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-29
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLIRCLSG KPKQWDL+LAQAEFA NNMKNRSTG CPF+IVYT+ PRLT +L +LP
Sbjct: 372 RTLGNLIRCLSGTKPKQWDLALAQAEFAFNNMKNRSTGECPFKIVYTKQPRLTLDLTSLP 431

Query: 70  SNVDISNEAENMIDRIQNLHKEVHDHL 97
           + V++  EAE MI  I+ LHKEV+DHL
Sbjct: 432 TTVNLDKEAERMIGDIEKLHKEVYDHL 458

[Close]

BLAST of IVF0017896 vs. NCBI nr
Match: KAA0051932.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK12230.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 3.70e-40
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLI  LSG KPKQW+L+LAQAEF  NNMKNRSTGRCPFEIVY RSPRLTF+L+NLP
Sbjct: 77  RTLGNLICPLSGSKPKQWNLALAQAEFTFNNMKNRSTGRCPFEIVYARSPRLTFDLSNLP 136

Query: 70  SNVDISNEAENMIDRIQNLHKE 91
           SNVDISNE ENMIDRIQNLHKE
Sbjct: 137 SNVDISNEVENMIDRIQNLHKE 158

[Close]

BLAST of IVF0017896 vs. NCBI nr
Match: KAA0039021.1 (UDP-glucose:glycoprotein glucosyltransferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 1.00e-36
Identity = 71/83 (85.54%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 4   QKSPIYRTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTF 63
           Q   I RTL NLIRCL G KPKQWDL+LAQAEFA NNMKNRSTGRCPFEIVYTRSPRLTF
Sbjct: 555 QTEVINRTLENLIRCLGGSKPKQWDLALAQAEFAFNNMKNRSTGRCPFEIVYTRSPRLTF 614

Query: 64  NLANLPSNVDISNEAENMIDRIQ 86
           +LANLPS VDISNEAENMIDRI+
Sbjct: 615 DLANLPSIVDISNEAENMIDRIK 637

[Close]

BLAST of IVF0017896 vs. NCBI nr
Match: KAA0047077.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa] >TYK05080.1 serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 3.20e-36
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLIRCL+G KPKQWD +LAQAEFA NNMKNRSTG+CPF+IVYT+ PRLT +L +LP
Sbjct: 77  RTLGNLIRCLNGTKPKQWDQALAQAEFAFNNMKNRSTGKCPFKIVYTKQPRLTLDLTSLP 136

Query: 70  SNVDISNEAENMIDRIQNLHKEVHDHL 96
           + +++  EAE M + I+ LHKEV+DHL
Sbjct: 137 TTMNLDKEAERMTEDIEKLHKEVYDHL 163

[Close]

BLAST of IVF0017896 vs. NCBI nr
Match: KAA0054242.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15029.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 4.32e-36
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLIRCLSG KPKQWDLSLAQAEF  NNM+NRST +CPFEIVYT+ PRLTF+LA+L 
Sbjct: 258 RTLGNLIRCLSGSKPKQWDLSLAQAEFVFNNMRNRSTNKCPFEIVYTKQPRLTFDLASLL 317

Query: 70  SNVDISNEAENMIDRIQNLHKEVHDHL 96
           + VDI+ EAENM ++++ LHKEV DHL
Sbjct: 318 TVVDINQEAENMAEKLEQLHKEVIDHL 344

[Close]

BLAST of IVF0017896 vs. NCBI nr
Match: KAA0048519.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK28310.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 1.16e-35
Identity = 62/87 (71.26%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 10  RTLGNLIRCLSGLKPKQWDLSLAQAEFASNNMKNRSTGRCPFEIVYTRSPRLTFNLANLP 69
           RTLGNLIRCLSG KP QWDLSLAQA+FA NNM+N+ST +CPFEIVYT+ PRLTF+LA+L 
Sbjct: 193 RTLGNLIRCLSGSKPTQWDLSLAQAKFAFNNMRNQSTNKCPFEIVYTKQPRLTFDLASLS 252

Query: 70  SNVDISNEAENMIDRIQNLHKEVHDHL 96
           + +DI+ EAENM ++++ LHKEV DHL
Sbjct: 253 TVIDINQEAENMAEKLEQLHKEVTDHL 279

The following BLAST results are available for this feature:

BLAST of IVF0017896 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLD7	1.4e-31	86.59	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TBM5	7.0e-31	85.54	UDP-glucose:glycoprotein glucosyltransferase isoform X1 OS=Cucumis melo var. mak...	[more]
A0A5D3BKX9	2.9e-29	73.56	Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UEM2	3.8e-29	74.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
A0A5A7UHK1	5.0e-29	73.56	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0017896 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051932.1	3.70e-40	86.59	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK12230.1 Tran...	[more]
KAA0039021.1	1.00e-36	85.54	UDP-glucose:glycoprotein glucosyltransferase isoform X1 [Cucumis melo var. makuw...	[more]
KAA0047077.1	3.20e-36	68.97	serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa] >TYK05080.1 ...	[more]
KAA0054242.1	4.32e-36	74.71	reverse transcriptase [Cucumis melo var. makuwa] >TYK15029.1 reverse transcripta...	[more]
KAA0048519.1	1.16e-35	71.26	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa] >TYK28310.1 ...	[more]

BLAST of IVF0017896 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..96
None	No IPR available	PANTHER	PTHR24559:SF367	SUBFAMILY NOT NAMED	coord: 8..93
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 8..93
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 8..95 e-value: 1.5E-10 score: 42.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017896.1	IVF0017896.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0097359	UDP-glucosylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity