IVF0017860 (gene) Melon (IVF77) v1

Overview


Name	IVF0017860
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 27486496 .. 27486732 (+)
RNA-Seq Expression	IVF0017860
Synteny	IVF0017860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAATGCCATGCAACTTCTTTCCTACAGATTTCTACTACCCTCGTTCCGCACAGCCTCATTTCGCTCAAATCGCCGCCAAGCCATTGAGCAAAACCGTTGAAGATGATCGAGAAGTCGAGCGGTTGGAGAAAGCATTGTCGTTGTCGTCTGTGGCCATTGAAAAGAAGATGGTTGGAGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATTCTCAAACAATGA

mRNA sequence

ATGGCCGGAATGCCATGCAACTTCTTTCCTACAGATTTCTACTACCCTCGTTCCGCACAGCCTCATTTCGCTCAAATCGCCGCCAAGCCATTGAGCAAAACCGTTGAAGATGATCGAGAAGTCGAGCGGTTGGAGAAAGCATTGTCGTTGTCGTCTGTGGCCATTGAAAAGAAGATGGTTGGAGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATTCTCAAACAATGA

Coding sequence (CDS)

ATGGCCGGAATGCCATGCAACTTCTTTCCTACAGATTTCTACTACCCTCGTTCCGCACAGCCTCATTTCGCTCAAATCGCCGCCAAGCCATTGAGCAAAACCGTTGAAGATGATCGAGAAGTCGAGCGGTTGGAGAAAGCATTGTCGTTGTCGTCTGTGGCCATTGAAAAGAAGATGGTTGGAGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATTCTCAAACAATGA

Protein sequence

MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMVGASTSMAFLPPPSYILKQ

Homology

[Close]

BLAST of IVF0017860 vs. ExPASy TrEMBL
Match: A0A5A7UD60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006830 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.9e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMV 60
          MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMV
Sbjct: 1  MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMV 60

Query: 61 GASTSMAFLPPPSYILKQ 79
          GASTSMAFLPPPSYILKQ
Sbjct: 61 GASTSMAFLPPPSYILKQ 78

[Close]

BLAST of IVF0017860 vs. NCBI nr
Match: KAA0053873.1 (hypothetical protein E6C27_scaffold135G002660 [Cucumis melo var. makuwa] >TYK25531.1 hypothetical protein E5676_scaffold352G006830 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 1.26e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMV 60
          MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMV
Sbjct: 1  MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVEDDREVERLEKALSLSSVAIEKKMV 60

Query: 61 GASTSMAFLPPPSYILKQ 78
          GASTSMAFLPPPSYILKQ
Sbjct: 61 GASTSMAFLPPPSYILKQ 78

[Close]

BLAST of IVF0017860 vs. NCBI nr
Match: KAG6580888.1 (hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 1.31e-15
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 1  MAGMPCNFFPTDFYYPRSAQP------HFAQIAAKPLSKTVEDDREVERL-EKALSLSSV 60
          MAGM  NFFPTDFYYPR   P          +   PL +TVED++  + + E   S +S+
Sbjct: 1  MAGMQYNFFPTDFYYPRPPPPPPPPPNSVKMLTTLPLRRTVEDEKGEQSVDEPKASPASM 60

Query: 61 AIEKKMVGASTSMAFLPPPSYILK 77
          A+ K +VGAS S AFLPPPS+ILK
Sbjct: 61 AMNKTVVGASISTAFLPPPSHILK 84

[Close]

BLAST of IVF0017860 vs. NCBI nr
Match: WP_217833416.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 66.2 bits (160), Expect = 3.52e-12
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 16 PRSAQPHFAQIAAKPLS--------KTVEDDREVE------RLEKALSLSSVAIEKKMVG 75
          P  + P+  QI+A+PL         KTVEDDRE +      +   +L  SS+AI+ K+VG
Sbjct: 3  PLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKVVG 62

Query: 76 ASTSMAFLPPPSYILKQ 78
          ASTSMAFLPPPSYILKQ
Sbjct: 63 ASTSMAFLPPPSYILKQ 79

[Close]

BLAST of IVF0017860 vs. NCBI nr
Match: ESR34473.1 (hypothetical protein CICLE_v10006298mg [Citrus clementina] >KDO41042.1 hypothetical protein CISIN_1g034266mg [Citrus sinensis] >GAY48992.1 hypothetical protein CUMW_115850 [Citrus unshiu])

HSP 1 Score: 45.8 bits (107), Expect = 5.85e-04
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0


Query: 1  MAGMPCNFFPTDFYYPRSAQPHFAQIAAKPLSKTVE 36
          MAG+  NFFPTDF+YPR+++P FA  AA   S   E
Sbjct: 1  MAGLQYNFFPTDFFYPRTSKPAFAATAAADTSAAAE 36

The following BLAST results are available for this feature:

BLAST of IVF0017860 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UD60	4.9e-35	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0017860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053873.1	1.26e-48	100.00	hypothetical protein E6C27_scaffold135G002660 [Cucumis melo var. makuwa] >TYK255...	[more]
KAG6580888.1	1.31e-15	50.00	hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sorori...	[more]
WP_217833416.1	3.52e-12	51.95	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
ESR34473.1	5.85e-04	55.56	hypothetical protein CICLE_v10006298mg [Citrus clementina] >KDO41042.1 hypotheti...	[more]

BLAST of IVF0017860 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017860.1	IVF0017860.1	mRNA