IVF0017555 (gene) Melon (IVF77) v1

Overview


Name	IVF0017555
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr09: 2154115 .. 2154976 (-)
RNA-Seq Expression	IVF0017555
Synteny	IVF0017555

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTTATCCTCTCTCAATGCCTTGGTGCTTTACAATCATGCAATAAATTTCTTTGGATCTGAGGCCTTTTCCATAATTTCCTTTTCCTTTCCTTGATAACTTCAAAACCCTCTCTCTCTCTCTGTCTCAAAAGTAACAAAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTTTTTCTTTCACTCATGGTACTCATATGTCTTCTATTTATTTTCTAATTATCTTTTTTTCATGTATGTTTTTCTATATTTTGATCATCCTCAGCTCATATTGTATATCTTTTACTCTGTTTCTATCTCAAGGATTGAAAGTGGAAATGATCGAATCTTTGGGACATGGAAGCAATGTTAGAAGTTCATCACTCAAGGTGTGATTTATTTTGTTTTGAAATAATCAATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATAATTAGTATTTAATTATATATTGTGTTAATTTTTGGCAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATAATAATACAAGATCAAGTGGGTATCTTCCTCCTCCTCCTCCACCAGCTGCTTAATTAATTTGTAACAGTTTTTTTTTTCTTTTTTGTCCAATAAAAGACCACAGCTTATAATAATATTATTAATTTCTGTGTGGTTTTTCATTTTCTAAGAACTTATTATCCTTCCAAGTGTAATTCATGCATGGTGTTGAAGAGATAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTTCCTTATATAAGAAACATAATAATGGGAG

mRNA sequence

ATCTTATCCTCTCTCAATGCCTTGGTGCTTTACAATCATGCAATAAATTTCTTTGGATCTGAGGCCTTTTCCATAATTTCCTTTTCCTTTCCTTGATAACTTCAAAACCCTCTCTCTCTCTCTGTCTCAAAAGTAACAAAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTTTTTCTTTCACTCATGGTACTCATATGTCTTCTATTTATTTTCTAATTATCTTTTTTTCATGTATGTTTTTCTATATTTTGATCATCCTCAGCTCATATTGTATATCTTTTACTCTGTTTCTATCTCAAGGATTGAAAGTGGAAATGATCGAATCTTTGGGACATGGAAGCAATGTTAGAAGTTCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATAATAATACAAGATCAAGTGGGTATCTTCCTCCTCCTCCTCCACCAGCTGCTTAATTAATTTGTAACAGTTTTTTTTTTCTTTTTTGTCCAATAAAAGACCACAGCTTATAATAATATTATTAATTTCTGTGTGGTTTTTCATTTTCTAAGAACTTATTATCCTTCCAAGTGTAATTCATGCATGGTGTTGAAGAGATAATTGGAGGTTTTGTTGTCTTTTACTCATTGGTGAACTTCCACTCAATTTTCCTTATATAAGAAACATAATAATGGGAG

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTTTTTCTTTCACTCATGGTACTCATATGTCTTCTATTTATTTTCTAATTATCTTTTTTTCATGTATGTTTTTCTATATTTTGATCATCCTCAGCTCATATTGTATATCTTTTACTCTGTTTCTATCTCAAGGATTGAAAGTGGAAATGATCGAATCTTTGGGACATGGAAGCAATGTTAGAAGTTCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATAATAATACAAGATCAAGTGGGTATCTTCCTCCTCCTCCTCCACCAGCTGCTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLFSFTHGTHMSSIYFLIIFFSCMFFYILIILSSYCISFTLFLSQGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA

Homology

[Close]

BLAST of IVF0017555 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.5e-25
Identity = 77/122 (63.11%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 1   MVHPKLFSTLLLLSCFLLFSFTHGTHMSSIYFLIIFFSCMFFYILIILSSYCISFTLFLS 60
           MVHPKLFSTLLLLSCFLL SFTH                                     
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTH------------------------------------- 60

Query: 61  QGLKVEMIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPP 120
            GLKVEMIESLGHGSNVR S SLKGIGGKSRKMMIEIMDYADPGPN NTR SGYL PPPP
Sbjct: 61  -GLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTR-SGYLNPPPP 83

Query: 121 PA 122
           P+
Sbjct: 121 PS 83

[Close]

BLAST of IVF0017555 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.4e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 67  MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 123
           MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA
Sbjct: 1   MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 56

[Close]

BLAST of IVF0017555 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 122 bits (307), Expect = 9.92e-34
Identity = 77/122 (63.11%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 1   MVHPKLFSTLLLLSCFLLFSFTHGTHMSSIYFLIIFFSCMFFYILIILSSYCISFTLFLS 60
           MVHPKLFSTLLLLSCFLL SFTHG                                    
Sbjct: 1   MVHPKLFSTLLLLSCFLLLSFTHG------------------------------------ 60

Query: 61  QGLKVEMIESLGHGSNVR-SSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPP 120
             LKVEMIESLGHGSNVR S SLKGIGGKSRKMMIEIMDYADPGPN NTRS GYL PPPP
Sbjct: 61  --LKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIMDYADPGPNTNTRS-GYLNPPPP 83

[Close]

BLAST of IVF0017555 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 9.72e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 67  MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 122
           MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA
Sbjct: 1   MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 56

[Close]

BLAST of IVF0017555 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 6.52e-11
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 57  LFLSQGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYL-- 116
           LF+  G  V  +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTRS GYL  
Sbjct: 11  LFIIFGFGVGAMEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYADPGPNTNTRS-GYLTP 70

Query: 117 ---PPPPP 119
              PPPPP
Sbjct: 71  PSSPPPPP 77

[Close]

BLAST of IVF0017555 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 6.86e-11
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 57  LFLSQGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPP 116
           LF+  G  V  +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTRS GYL P
Sbjct: 13  LFIILGFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMDYADPGPNTNTRS-GYLTP 72

[Close]

BLAST of IVF0017555 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 61.6 bits (148), Expect = 1.02e-09
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 57  LFLSQGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYL-- 116
           LF+  G  V  +E+  H     SSS K  GGK RK+M+E+MDYADPGPN NTRS GYL  
Sbjct: 11  LFIIFGFGVGAMEAAAHAGCDISSSQKS-GGKPRKVMMEVMDYADPGPNTNTRS-GYLTP 70

Query: 117 ---PPPPP 119
              PPPPP
Sbjct: 71  PSSPPPPP 76

The following BLAST results are available for this feature:

BLAST of IVF0017555 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017555 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSB7	9.5e-25	63.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1	[more]
A0A5D3CUT5	4.4e-22	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0017555 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52468.1	9.92e-34	63.11	hypothetical protein Csa_007886 [Cucumis sativus]	[more]
KAA0039487.1	9.72e-31	100.00	hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524...	[more]
XP_023527249.1	6.52e-11	55.88	uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6602500.1	6.86e-11	57.38	hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023527257.1	1.02e-09	55.88	uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0017555 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..122
None	No IPR available	PANTHER	PTHR37908:SF3	TRANSMEMBRANE PROTEIN	coord: 42..120
None	No IPR available	PANTHER	PTHR37908	TRANSMEMBRANE PROTEIN	coord: 42..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017555.1	IVF0017555.1	mRNA