IVF0017515 (gene) Melon (IVF77) v1

Overview


Name	IVF0017515
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CHCH domain-containing protein
Location	chr08: 2153433 .. 2154251 (-)
RNA-Seq Expression	IVF0017515
Synteny	IVF0017515

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAAATGTCCAATCCCAAAGATGAGGGGAAGAAGGAATTCTCATTTATCCCTTCCTCCATCTCCCACCACATAAAAGCAAAAGCCGATAACCCTCTCTGCATCATCTTCTTCCTTTCACACCAGTCTTTCACTTCAACAAGTAACAAGAAATGATTTCACTCAAACCCTCCACTCACCACAACGGATTTAATACCTCATTCCCTTACAACTCTTCGAAATTTCAACAAAACCCCACTCCAATCGTTAGAATAATTAAGCCCAATTTCGCACATACCAAAACAACTTTCAGAACCCACGCCGAGCAGACCGGATCGGGCAAAGGCGCTCAAAAACGGACTTTCTTGACCATCGAAGAAGCCGGCCTCGTAGAAGTATCCGGCCTCAGCACCCACGAAAGATTCCTCTGCCGTTTAACCGTATAATTTCCTCTGTTTTGGTCTCTTTTTCTCTCTTTTTTTCTTTATAAACTATATATATATATATTATTGATGGTGTTGTGTGTGTGTGTCTGTGATAGATATCTTCTCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGAAATGCTCGATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGATGATTCTGATCCTCTTTTCTGATATTTTATCTTCTACCAATTACACTCCCTCCTATTCCCACTTTGATCTCATATTCATATTTCCTCCGCATTCTGTTAAACCACAATTAATTTCGCATTATATTCGATAATTTAATTAACTTTTCTTTTTC

mRNA sequence

CAAAAAAATGTCCAATCCCAAAGATGAGGGGAAGAAGGAATTCTCATTTATCCCTTCCTCCATCTCCCACCACATAAAAGCAAAAGCCGATAACCCTCTCTGCATCATCTTCTTCCTTTCACACCAGTCTTTCACTTCAACAAGTAACAAGAAATGATTTCACTCAAACCCTCCACTCACCACAACGGATTTAATACCTCATTCCCTTACAACTCTTCGAAATTTCAACAAAACCCCACTCCAATCGTTAGAATAATTAAGCCCAATTTCGCACATACCAAAACAACTTTCAGAACCCACGCCGAGCAGACCGGATCGGGCAAAGGCGCTCAAAAACGGACTTTCTTGACCATCGAAGAAGCCGGCCTCGTAGAAGTATCCGGCCTCAGCACCCACGAAAGATTCCTCTGCCGTTTAACCATATCTTCTCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGAAATGCTCGATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGATGATTCTGATCCTCTTTTCTGATATTTTATCTTCTACCAATTACACTCCCTCCTATTCCCACTTTGATCTCATATTCATATTTCCTCCGCATTCTGTTAAACCACAATTAATTTCGCATTATATTCGATAATTTAATTAACTTTTCTTTTTC

Coding sequence (CDS)

ATGATTTCACTCAAACCCTCCACTCACCACAACGGATTTAATACCTCATTCCCTTACAACTCTTCGAAATTTCAACAAAACCCCACTCCAATCGTTAGAATAATTAAGCCCAATTTCGCACATACCAAAACAACTTTCAGAACCCACGCCGAGCAGACCGGATCGGGCAAAGGCGCTCAAAAACGGACTTTCTTGACCATCGAAGAAGCCGGCCTCGTAGAAGTATCCGGCCTCAGCACCCACGAAAGATTCCTCTGCCGTTTAACCATATCTTCTCTGAATTTACTGAGAGTGATAGCGGAGGAAGAGAAATGCTCGATTGAAGAGTTGAATGCGGGAAGATTATGCGATTGGTTTCTCAAGGATAAGTTGAAAAGAGAGCAGAATTTGGATTCTGCTGTTCTTCAATGGGATGATTCTGATCCTCTTTTCTGA

Protein sequence

MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFAHTKTTFRTHAEQTGSGKGAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF

Homology

[Close]

BLAST of IVF0017515 vs. ExPASy TrEMBL
Match: A0A0A0KHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.7e-71
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFAHTKTTFRTHAEQTGSGKGAQ 60
           MISLKPSTHHNGF+TSFPYNSSKFQQNP PI+RI KPNF+HTKTTFRTHA+ +GSGKG Q
Sbjct: 1   MISLKPSTHHNGFDTSFPYNSSKFQQNPIPIIRITKPNFSHTKTTFRTHAQPSGSGKGPQ 60

Query: 61  KRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCDWFL 120
           KRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  KRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 145
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. ExPASy TrEMBL
Match: A0A6J1ISV2 (uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.7e-54
Identity = 117/147 (79.59%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFA---HTKTTFRTHAEQTGSGK 60
           MISLKPS HHNG  +SF  NSS   Q   PI R ++ NF     TKTTFR  AEQ  SG 
Sbjct: 1   MISLKPSPHHNG--SSFLSNSSNLHQKLNPITR-LRSNFPPPFRTKTTFRIRAEQAESGN 60

Query: 61  GAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCD 120
           GAQ+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCD
Sbjct: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 145
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. ExPASy TrEMBL
Match: A0A6J1GCY7 (uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC111453037 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 117/147 (79.59%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNF---AHTKTTFRTHAEQTGSGK 60
           MISLKPS HHNG  +SF  NSS   Q  +PI R  + NF     TKTTFR  AEQ  SG 
Sbjct: 1   MISLKPSPHHNG--SSFLSNSSNLHQKLSPITR-HRSNFPPPLRTKTTFRIRAEQAESGN 60

Query: 61  GAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCD 120
           GAQ+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCD
Sbjct: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 145
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. ExPASy TrEMBL
Match: A0A6J1CKG5 (uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012432 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.6e-42
Identity = 107/156 (68.59%), Postives = 113/156 (72.44%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFAHT---------KTTFR---T 60
           MISL P  + NG  +SFP+ SS         +R I  NFA           K  FR    
Sbjct: 1   MISLGPCAYQNG--SSFPFYSSNLLN-----LRPIPSNFALPLPTNSIILGKRNFRFRVV 60

Query: 61  HAEQTGSGKGAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIE 120
            AEQ G G  AQ+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIE
Sbjct: 61  RAEQAG-GNSAQRRTFLTVEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIE 120

Query: 121 ELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDPLF 145
           ELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD  F
Sbjct: 121 ELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSDLTF 148

[Close]

BLAST of IVF0017515 vs. ExPASy TrEMBL
Match: A0A6P4A1U2 (uncharacterized protein LOC107422001 OS=Ziziphus jujuba OX=326968 GN=LOC107422001 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.8e-37
Identity = 88/149 (59.06%), Postives = 106/149 (71.14%), Query Frame = 0


Query: 1   MISLKP-STHHNGFNTSFPYNSSKFQQNPTPIVRIIK----PNFAHTKTTFRTHAEQTGS 60
           M+SLKP  THH   + S P+N     +     +R  K     + + +        E+   
Sbjct: 1   MLSLKPCKTHHRLSSLSSPFNLQNIIKQTQTKIRPTKLAPRRSLSLSIRGCSGQEEKGRE 60

Query: 61  GKGAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRL 120
            K +Q+RTFLT+EEAGLVE+SGL THERFLCRLTISSLNLLRVIAE+E CSIEELNAGR+
Sbjct: 61  NKSSQRRTFLTLEEAGLVEISGLGTHERFLCRLTISSLNLLRVIAEQEGCSIEELNAGRV 120

Query: 121 CDWFLKDKLKREQNLDSAVLQWDDSDPLF 145
           CDWF+KDKLKREQN+DSAVLQWDDS+  F
Sbjct: 121 CDWFVKDKLKREQNIDSAVLQWDDSESPF 149

[Close]

BLAST of IVF0017515 vs. NCBI nr
Match: XP_004134733.1 (uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical protein Csa_002941 [Cucumis sativus])

HSP 1 Score: 276 bits (707), Expect = 1.65e-93
Identity = 134/144 (93.06%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFAHTKTTFRTHAEQTGSGKGAQ 60
           MISLKPSTHHNGF+TSFPYNSSKFQQNP PI+RI KPNF+HTKTTFRTHA+ +GSGKG Q
Sbjct: 1   MISLKPSTHHNGFDTSFPYNSSKFQQNPIPIIRITKPNFSHTKTTFRTHAQPSGSGKGPQ 60

Query: 61  KRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCDWFL 120
           KRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCDWFL
Sbjct: 61  KRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCDWFL 120

Query: 121 KDKLKREQNLDSAVLQWDDSDPLF 144
           KDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 KDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. NCBI nr
Match: XP_038881387.1 (uncharacterized protein LOC120072922 [Benincasa hispida])

HSP 1 Score: 234 bits (597), Expect = 1.08e-76
Identity = 127/149 (85.23%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFA---HTKTT-FRTHAEQTGS- 60
           MISL PSTHHNG  +SF YNSS  QQN  P +  IKPNFA   HTKTT FRT AEQ GS 
Sbjct: 1   MISLNPSTHHNG--SSFHYNSSNLQQNFIPTIIRIKPNFAPPFHTKTTTFRTQAEQAGSS 60

Query: 61  GKGAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRL 120
           G GAQ+RTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRL
Sbjct: 61  GNGAQRRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRL 120

Query: 121 CDWFLKDKLKREQNLDSAVLQWDDSDPLF 144
           CDWFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 CDWFLKDKLKREQNLDSAVLQWDDSDPLF 147

[Close]

BLAST of IVF0017515 vs. NCBI nr
Match: XP_022977984.1 (uncharacterized protein LOC111478111 [Cucurbita maxima])

HSP 1 Score: 219 bits (557), Expect = 1.22e-70
Identity = 117/147 (79.59%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFA---HTKTTFRTHAEQTGSGK 60
           MISLKPS HHNG  +SF  NSS   Q   PI R+ + NF     TKTTFR  AEQ  SG 
Sbjct: 1   MISLKPSPHHNG--SSFLSNSSNLHQKLNPITRL-RSNFPPPFRTKTTFRIRAEQAESGN 60

Query: 61  GAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCD 120
           GAQ+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCD
Sbjct: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. NCBI nr
Match: XP_023544671.1 (uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218 bits (555), Expect = 2.46e-70
Identity = 116/147 (78.91%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFA---HTKTTFRTHAEQTGSGK 60
           MISLKPS HHNG  +SF +NSS   Q  +PI R  + NF     TKTTF+  AEQ  SG 
Sbjct: 1   MISLKPSPHHNG--SSFLFNSSNLHQKLSPITRH-RSNFPPPFRTKTTFKIRAEQAESGN 60

Query: 61  GAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCD 120
           GAQ+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCD
Sbjct: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. NCBI nr
Match: XP_022949732.1 (uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothetical protein SDJN03_04335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033905.1 hypothetical protein SDJN02_03630 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217 bits (553), Expect = 4.95e-70
Identity = 117/147 (79.59%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 1   MISLKPSTHHNGFNTSFPYNSSKFQQNPTPIVRIIKPNFA---HTKTTFRTHAEQTGSGK 60
           MISLKPS HHNG  +SF  NSS   Q  +PI R  + NF     TKTTFR  AEQ  SG 
Sbjct: 1   MISLKPSPHHNG--SSFLSNSSNLHQKLSPITRH-RSNFPPPLRTKTTFRIRAEQAESGN 60

Query: 61  GAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEEEKCSIEELNAGRLCD 120
           GAQ+RTFLT+EEAGLVEVSGLSTHERFLCRLTISSLNLL+VIAEEEKCSIEELNAGRLCD
Sbjct: 61  GAQRRTFLTLEEAGLVEVSGLSTHERFLCRLTISSLNLLKVIAEEEKCSIEELNAGRLCD 120

Query: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144
           WFLKDKLKREQNLDSAVLQWDDSDPLF
Sbjct: 121 WFLKDKLKREQNLDSAVLQWDDSDPLF 144

[Close]

BLAST of IVF0017515 vs. TAIR 10
Match: AT4G21445.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33
Identity = 65/99 (65.66%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 43  KTTFRTHAEQTGSGKGAQKRTFLTIEEAGLVEVSGLSTHERFLCRLTISSLNLLRVIAEE 102
           + +  T  E++      ++R+FL++ EAGLVE+SGL  HE+FLCRLTISSLNLLRVI+E+
Sbjct: 53  RASAETGEEESDDQNKPERRSFLSLAEAGLVEISGLGAHEKFLCRLTISSLNLLRVISEQ 112

Query: 103 EKCSIEELNAGRLCDWFLKDKLKREQNLDSAVLQWDDSD 142
           E CSIEELNAG++CDWFLKDKLKRE N++SAVLQWDD D
Sbjct: 113 EGCSIEELNAGKICDWFLKDKLKREHNIESAVLQWDDPD 151

The following BLAST results are available for this feature:

BLAST of IVF0017515 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017515 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHI4	2.7e-71	93.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516880 PE=4 SV=1	[more]
A0A6J1ISV2	6.7e-54	79.59	uncharacterized protein LOC111478111 OS=Cucurbita maxima OX=3661 GN=LOC111478111...	[more]
A0A6J1GCY7	2.0e-53	79.59	uncharacterized protein LOC111453037 OS=Cucurbita moschata OX=3662 GN=LOC1114530...	[more]
A0A6J1CKG5	1.6e-42	68.59	uncharacterized protein LOC111012432 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6P4A1U2	9.8e-37	59.06	uncharacterized protein LOC107422001 OS=Ziziphus jujuba OX=326968 GN=LOC10742200...	[more]

BLAST of IVF0017515 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134733.1	1.65e-93	93.06	uncharacterized protein LOC101211873 [Cucumis sativus] >KGN49180.1 hypothetical ...	[more]
XP_038881387.1	1.08e-76	85.23	uncharacterized protein LOC120072922 [Benincasa hispida]	[more]
XP_022977984.1	1.22e-70	79.59	uncharacterized protein LOC111478111 [Cucurbita maxima]	[more]
XP_023544671.1	2.46e-70	78.91	uncharacterized protein LOC111804184 [Cucurbita pepo subsp. pepo]	[more]
XP_022949732.1	4.95e-70	79.59	uncharacterized protein LOC111453037 [Cucurbita moschata] >KAG6603726.1 hypothet...	[more]

BLAST of IVF0017515 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21445.1	1.3e-33	65.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36382	OSJNBA0043L09.26 PROTEIN	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017515.1	IVF0017515.1	mRNA