IVF0017481 (gene) Melon (IVF77) v1

Overview
NameIVF0017481
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionActin-related protein 2/3 complex subunit 5
Locationchr03: 1879812 .. 1884036 (+)
RNA-Seq ExpressionIVF0017481
SyntenyIVF0017481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTTATTCTCCTTTCCCTCAATTTCACACCACCAATGATCCCATTTATCCCAAAAAAATTATTGTCCAACTCCCTCAATTAAAAATTGTAATAAAATTAAAAGAAAAAACTATTATAATAAACAAAACCATCGCACCTCAAAAGACCATTCGGCGGCGAGAAAACCTGTCATCTCTTCTTTTCACAAATCACAATTCACATTTAGCTCCGATTTCATTCATACAACTGTTGGGTTATCGATCTGTATTGGTATGATCAGTTTTTAGTTAAGCTCGAGAAAATCCTACTGGAAGTAGGGTGATAACGCAAGGCGAAAATGGCGACTACATGTGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTAATGAATTCTGTACCTTCTCTTTGATTTACACCATTTAATTCATTTAACTCTCTTATTGAAGACGCCCCAATTTGTTAACTTTTTTTACTCTTACAAGGTCTAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGTAAGGTATCCTTTCTTTCTTACTGCCTACCGAGCTGTCGTGTCTTGTTCAGAGCTAATGACGGTGTAGGATCGATATTCATGTTGGTTCCTTGCATTTTTCTGTGATAAGTGTTTTATTTTGATTATTTAGTTTGTGGGTGATGCTAGAAATGTTAAGGGAAATTATTGGAGAATCCTTGTTTTTTAGTCATCATTAAATTTATTTGTTATGCTTTTCCTATATTTTCTTAATGACGATGCCAATTAGGACTGTTGGATGTTGATTTAATTTTTGGAAAGAGTTTGCTGTGTTTGTTTGCAGCTACTGAAAATGAATGGGCTTGCTGTTTCTTTCATGTTTATGTTTTGTTGGTCTGCTTGACATTGGGAGGATGAGTTAATCTGATGTGATTATTTGGACTTCTTCAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTACGATATTCTAATGAAGTGAGTTTATGCGGTATTTAACTGCTAAAATATCAATTCTCATTGCTTCTACTTATCTCATTCTCAGCAGGAACGTTTAATTAGTTCCAAGTTTACTTTCTGATATTATTCTTTTGCTATGAAATTTATACTTAAGTGGTTGGGTTGATCCTACTGCTTTGTAAACAAACATTCTGTTTTCCATTTTTCCTAATCTCTTCAGATTTCTACTGCTAGCTGTGTTCGTGTCAGTAGGACATATGGTAGTCTTTAGATACTTGGAAGATTGCTTCGCTGATATGAATTTTTTTTGCTTTTGTAAGGAGTCTTCAATGGTTTATCCTTGGCAATCTTGTATTGCTTCACCCCTTTATGGTTTGGTTTTTGTCCATTGGAATGTAGAGACTTGTTCATGGCATCCCACTTTTTGAAAAGCTAGGTGGTTGGCCTTTGAACGCCTTTGGAAATATATCAGGTTTTATGAAATTCTAAAAGTTCCAAGTGATTCAATGTTTTGGAGTGGAGAATGTTCCCCTCCTGTCTTCAAGATCTCATTTTAATGGTTCAATGAACTCAAAAGTCTTCCTTCAGAGATTTGGTTTGATTGTAATTAGAGGGCTCCTTCTCTCCTACCAGTTGTCCTCACCAAATGGTTACTTGTTTTGAGAGTTTCAATTTCAGTGGTGTTTGTATTTGCTTTTATTTTCTGAGCAAGTACAGTGTTGGGATATATTCCGATGCCTTTGCTTTATCTTGCTTTTTATGTCTTTCTATTTCAAGCATTAGCCTCTTTTCATTTCATTCTTTCAGTGAAAAGTTTTGTTTATGTTAAAAAACTAAAATTATTTTTTTGCTAGGAGTCTTTGTAAAAGTGGAAATCTCTCTAACCATCATGCTTGAAATATCTCATTACATCTTCTGAATCTAGCAAGTCATGTCCAACCCTTCTGCCAATGGGTCTTGCAAAATTTATTATTCTTGTCCTATATTCGTATGTGTCTATTTAGCATGCTTAACAAGTGTTCAATACATGTCTAATAATGTTAGACATATATTGACTTTGTAGTTTGTATAAGTATAACTAATTTGTAACACATGCTAACAAACGTCTGACACATCCAACAAGTGTGGAGTGTCCGAATGTCGGACATAGACATATTAGTCAAATTAAAGTGTTTATGTTTCTTTAAGGCCTTGTCTTCCAGCAGTCTCTCAATTTGTTTTCCAACACATTCCCTAATATACAAGGATTATGAACACCAACAAGAAGTAAGTGAGGATACTTGACAATACTCATTTGGCCAATGGTAATCCTTCCCTTTGGAACATCAGGACTGTTTTCTTGTGGAGCATCTTTTGAGATTAATGACAGGGTTTCAAAAGCCAATTGGCCTCAATTAGTCTCCAAGCATAGGCACCATGTGAATCATTTGTGGGGAAGTAGTGGCGGATCACCTTTTCTGAGATTAATGACAGGGTTTCAAAAGCCCATGACCTCGATTGTCCTCCAAGCATCAAATGGAAGGGCTTTTCTCCTGAGTATATGTCTGTTCCTCTTGTCTTAAGTACCACCAAGAATATCTGTTCATGCGATCTTATAACACTTAACCTTTTCTTTTCTTTAAAAGGATTCACCAAGAGAGATATCCACAGACTCCTTAATATTTCAAGAATAGCTGGAAACCAGCCAAAACTAAAAGAACTAACAAAAAGCCTGCATTTTAAGCATGGTTGCAATTAGAATAAAATATGATCTTTGTTTTCTTCTTACTATATGCATATGGCATCATACCAACTGGACGAAATGGAGAATTAGGTTTCTAGCTTGGATTTCTATCTTATAGAAGATTTAAAAAATTACTCCAAATGGTGTATTTTCAGTAGAGTTCTCCAAAGCCACTTGGCCGTGAACGTGATATTTTTTTCCTTGAGATTACCAAGATTAAACTCTCCAAGATGAAGAGGAAGCTTACTCTTTTCCAAATGACAATGTATGATCGACCTTCAGTACCAGATCCATTAAAACTCAAGCAGAAAAAGCACTTTGGAAGATGGTTATTTCCAGTAAAATGGGGTGAAACTCAGCGCTTGAAAAGTAAAGTTCCATAGAAAATCAAGTTCTTCCTTTGGCCCTTGCTTGAAGAGGTTTAAACACAAAAAAGCTTGTAGGAGACGAATCCAAAATACGTTCTTTCTTCACTTGATTGTGGCTTATGACTTGATGGAAAAAATTATTCTTCCACTGTCAGTTTTGTACTGGCTTAATTATTCAGCCTTTTCAATGTCTTCTTATGCCTTCCCAGGAACCTCCAAGATTGGTTATACAAAGTGTTCTACAATTGGTGGTTGAAAGGGGAAACTGGACATCTTGGGACATGCACCTTTTGATTGCCCTACACAAAGCATTATTTGATAACCATAATGTTTCTTTTATCATCCTTTCCAACTTGAACGCCATCCATGTAAAACCTGTGAGTAGGCCTCTAGGAAGGAGCATGATGAAACAATTAGATGCTAAAATGAATAGGAAGTGCAGAAAAGATTTCCATTAACTCATCTCAAGGCAAGCGTTTTCTTTATAGGGTTGCTGCTAGTATGATGGAATAACTATCTTCCAAAACATTAGCATGAATTTGCCTCCTTCAACAAGTGCAAAAGCTACTTCAAGATAGTATCTAGAAACTTCCACTAAACAAGCATTCACGGATTTTGAATCCAAATATTATGCCACATCCAACATTTATCTATGTTGTTTTCTTTCCAAAACTTGAGTATTTATATGTATAACCATTTGCAGGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTATTAATACTGTTTGATTTTTCTTTTGAGCAACTTTTGGTTGATGTTGGATATATGTCATACTAAGAGCTGAAAATGTACTCAGTTCCATCGAGTTTTGACAGGTGTAAATTGCTTTCCAGATTGTGGATTTATGTCAACCAGATTTAATTTCTAAATGTACTTGTAATTTGTAATTTGAACAATTGAATGTAGACTGAAATTGAATATAACCTATGGACTAGACGAAGTTAGAG

mRNA sequence

AGTTTATTCTCCTTTCCCTCAATTTCACACCACCAATGATCCCATTTATCCCAAAAAAATTATTGTCCAACTCCCTCAATTAAAAATTGTAATAAAATTAAAAGAAAAAACTATTATAATAAACAAAACCATCGCACCTCAAAAGACCATTCGGCGGCGAGAAAACCTGTCATCTCTTCTTTTCACAAATCACAATTCACATTTAGCTCCGATTTCATTCATACAACTGTTGGGTTATCGATCTGTATTGGTATGATCAGTTTTTAGTTAAGCTCGAGAAAATCCTACTGGAAGTAGGGTGATAACGCAAGGCGAAAATGGCGACTACATGTGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTCTAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGTAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTACGATATTCTAATGAAGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTATTAATACTGTTTGATTTTTCTTTTGAGCAACTTTTGGTTGATGTTGGATATATGTCATACTAAGAGCTGAAAATGTACTCAGTTCCATCGAGTTTTGACAGGTGTAAATTGCTTTCCAGATTGTGGATTTATGTCAACCAGATTTAATTTCTAAATGTACTTGTAATTTGTAATTTGAACAATTGAATGTAGACTGAAATTGAATATAACCTATGGACTAGACGAAGTTAGAG

Coding sequence (CDS)

ATGGCGACTACATGTGAATTTGTGGAAGCAGATAATGCAGAAGCCATAATCACCAGAATTGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTCTAAACCAGTCGAAGCTCTTAAAACTGCTCTTGAAGGTTCCCCTCCAAATACCCGAGATGAGCGTTGTAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATGTAGATGGGATGTTTTCTTCGTTGGATCCAGAGTACTACGATATTCTAATGAAGTACTTGTATAGAGGGTTGTCAACTGGTGATCGTCCCACATGTGATCAATGTCTCAGGATACATGAAAAGTTGACAGAAAGGGCTGGCTTAGGCTGCATTCTTCGTTCTCTTGCCGATACTATTAATACTGTTTGA

Protein sequence

MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSLADTINTV
Homology
[Close]
BLAST of IVF0017481 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-61
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTINTV 136
           R L DTINTV
Sbjct: 123 RCLTDTINTV 132

[Close]
BLAST of IVF0017481 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.5e-56
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

[Close]
BLAST of IVF0017481 vs. ExPASy Swiss-Prot
Match: Q6DE18 (Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5-b PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 0 

Query: 26  KIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++SL++Q + + A ++AL  SP N++++  K     +V + L + K  +++   ++LDP
Sbjct: 42  EVDSLIRQGELLRAFQSALRNSPVNSKNQVAKERTQAIVLKVLTSFKSNEIEKAVNTLDP 101

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G       +    L+ HEK     GLG I+R L
Sbjct: 102 NGIDLLMKYIYKGFEKPTENSSAILLQWHEKAFVIGGLGSIVRVL 146

[Close]
BLAST of IVF0017481 vs. ExPASy Swiss-Prot
Match: O15511 (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 26  KIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of IVF0017481 vs. ExPASy Swiss-Prot
Match: Q5R516 (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0 

Query: 26  KIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 85
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 86  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCILRSL 129
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]
BLAST of IVF0017481 vs. ExPASy TrEMBL
Match: A0A1S3B407 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485501 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.7e-70
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of IVF0017481 vs. ExPASy TrEMBL
Match: A0A0A0KD59 (Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G008040 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.4e-69
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTC+FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of IVF0017481 vs. ExPASy TrEMBL
Match: A0A6J1BVD6 (Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LOC111006055 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of IVF0017481 vs. ExPASy TrEMBL
Match: W9R3V7 (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.7e-67
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of IVF0017481 vs. ExPASy TrEMBL
Match: A0A6P4A354 (Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC107424250 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T EFVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTGEFVEADNAEAIITRIEHKSRKIESLLKQYKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of IVF0017481 vs. NCBI nr
Match: XP_008441367.1 (PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo])

HSP 1 Score: 272 bits (696), Expect = 4.01e-92
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 135
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of IVF0017481 vs. NCBI nr
Match: XP_004138489.1 (actin-related protein 2/3 complex subunit 5A [Cucumis sativus] >KGN45721.1 hypothetical protein Csa_005374 [Cucumis sativus])

HSP 1 Score: 268 bits (686), Expect = 1.34e-90
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATTC+FVEADNAEAIITRIEHKSRKIESLLKQ KPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTCDFVEADNAEAIITRIEHKSRKIESLLKQLKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 135
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of IVF0017481 vs. NCBI nr
Match: XP_038884940.1 (actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884942.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884943.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida])

HSP 1 Score: 266 bits (681), Expect = 7.78e-90
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MATT EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MATTGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 135
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of IVF0017481 vs. NCBI nr
Match: XP_022133485.1 (actin-related protein 2/3 complex subunit 5A [Momordica charantia])

HSP 1 Score: 262 bits (670), Expect = 3.71e-88
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA   EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAAAAEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WI VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIAVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 135
           LGCILRSLADTINTV
Sbjct: 121 LGCILRSLADTINTV 135

[Close]
BLAST of IVF0017481 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 262 bits (670), Expect = 3.71e-88
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA T  FVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN
Sbjct: 1   MAGTDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG
Sbjct: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 135
           LGCILRSLADT+NTV
Sbjct: 121 LGCILRSLADTVNTV 135

[Close]
BLAST of IVF0017481 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 237.3 bits (604), Expect = 7.3e-63
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 0 

Query: 6   EFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIVVH 65
           EFVEADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVH
Sbjct: 3   EFVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVH 62

Query: 66  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGCIL 125
           RALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTERAGLGCIL
Sbjct: 63  RALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCIL 122

Query: 126 RSLADTINTV 136
           R L DTINTV
Sbjct: 123 RCLTDTINTV 132

[Close]
BLAST of IVF0017481 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 217.6 bits (553), Expect = 6.0e-57
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 0 

Query: 1   MATTCEFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSAN 60
           MA    FVEADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSAN
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120
           WIVVHRA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTERAG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRSLADTINTV 136
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135

The following BLAST results are available for this feature:
BLAST of IVF0017481 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1171.0e-6190.00Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=... [more]
B3H6Y28.5e-5679.26Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q6DE182.0e-0931.43Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5... [more]
O155112.7e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=... [more]
Q5R5162.7e-0932.38Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=... [more]
BLAST of IVF0017481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B4071.7e-70100.00Actin-related protein 2/3 complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103485... [more]
A0A0A0KD592.4e-6997.78Actin-related protein 2/3 complex subunit 5 OS=Cucumis sativus OX=3659 GN=Csa_6G... [more]
A0A6J1BVD61.7e-6796.30Actin-related protein 2/3 complex subunit 5 OS=Momordica charantia OX=3673 GN=LO... [more]
W9R3V71.7e-6797.04Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484... [more]
A0A6P4A3542.9e-6796.30Actin-related protein 2/3 complex subunit 5 OS=Ziziphus jujuba OX=326968 GN=LOC1... [more]
BLAST of IVF0017481 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441367.14.01e-92100.00PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo][more]
XP_004138489.11.34e-9097.78actin-related protein 2/3 complex subunit 5A [Cucumis sativus] >KGN45721.1 hypot... [more]
XP_038884940.17.78e-9098.52actin-related protein 2/3 complex subunit 5A [Benincasa hispida] >XP_038884941.1... [more]
XP_022133485.13.71e-8896.30actin-related protein 2/3 complex subunit 5A [Momordica charantia][more]
XP_010089302.13.71e-8897.04actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin... [more]
BLAST of IVF0017481 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G01710.17.3e-6390.00ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
AT5G65274.16.0e-5779.26ARP2/3 complex 16 kDa subunit (p16-Arc) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilyGENE3D1.25.40.190coord: 17..132
e-value: 3.3E-31
score: 109.8
IPR036743Actin-related protein 2/3 complex subunit 5 superfamilySUPERFAMILY69103Arp2/3 complex 16 kDa subunit ARPC5coord: 6..131
IPR006789Actin-related protein 2/3 complex subunit 5PFAMPF04699P16-Arccoord: 11..131
e-value: 1.4E-22
score: 80.7
IPR006789Actin-related protein 2/3 complex subunit 5PANTHERPTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCcoord: 4..133
NoneNo IPR availablePANTHERPTHR12644:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5coord: 4..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017481.2IVF0017481.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0015629 actin cytoskeleton
molecular_function GO:0051015 actin filament binding