IVF0017280 (gene) Melon (IVF77) v1

Overview


Name	IVF0017280
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr08: 29353516 .. 29355066 (+)
RNA-Seq Expression	IVF0017280
Synteny	IVF0017280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTATCTCTGTTCGAAAGAGCTTCGGGTCTCAAAATAAACTTATTGAAATCAGCTCTGGTGCCAGTGAATGTGTCCGTGAATAGAGCTAAAGAATGTGCTTCGTTTTGGGGTATTTCTTGCCACTCTCTCCCCCTCTCCTACTTGGGAGTTCCTCTTGGTGGCAATCCAAAATCCAACCTCTTTTGGCGCAACGTTGAAGATAAGATCCAAAAAAAGCTCAATAATTGGAAATATGCTCAGATATCAAAAAGTGGAAGACTCACTTTAATCAAGTCTACCCTTAGCAGTCTTCCTATTTATCAACTATCTGTTTTCCAAGCTCCTTCCTTGACGTGCAAAAACATTGAAAAATCCTGGAGAAAGTTCCTTTGGAAAGGTAATAACGGATCAGAAGGATCTCACCTAATCAACTGGACTAAAGTCTCTAAATCTAAAGAGGAGGGTAGGCTGGGTATCTCAAGGCTTCATGTGACAAATAAAGCCCTCTTAACTAAGTGGCTCTGGCGTTATCTCTCGGAACCTAATGCCCTTTGGAGGAGATTGATTCAATGCAAATATAAAGGCAACTATCCAGGAGACATTCCATCAAACATCTCCTCTAGTACTCCTAAAGCCCCGTGGAGATCTATCATTGACAACATCGATTGGTTCAAAAGTAATCAAAGTTGGGAACTGAATAATGGAGATCAAATCTCCTTCTGGTATTCTAATTGGTCTCTAGAAGGACGTCTCTCAACTGCCTATCCTAGACTTTTTGCTCTTACTCTTGACAAAGAAATCTCAGTTAAAGATGCGTGGAACACATTCGATAACCGATGGAACATAATTTTTAGAAGAGAGCTGAACGATAGAGAAAGAAGCAAATGGGCAAAAATTTTAGAGATTCTCCCTACTCCGAGATCTAATAGAGGATCAAGCAAGCTTACCTGGAATCCTGACAGCAATAACTCTTTCTCCATTGCATCCGCAAAAGCCTTGATCTCTCGGCAGCTGGACCAATCTCCAGGGGACCCTCGAGCAAAGCTTCTTGAGATTATATGGAAGTCCACCATTCCAATGAAGATCAAATTCTTCATGTGGTGCCTGATTCAAAGAAGAATAAATACGATGGAGGTTATTCAGCAAAGAATGCCCAACATTCCCCTTCAACCCAACTGGTGCGTACTTTGTAAGAAAGATAGTGAATCAGGAATCCACCTTTTTCTTCGATGCGAAGCTGTGAAACCCTTATGGTCCTTTCTCCAGCATTCTCTCAATTTCGCTCTCAGTACCGACGAACTGGAGGACGTGTTCTCCTTCTTCCATTCTCTAAAGTGCTCCATCCCGAAACACAAGGTCGTTTTTTGTGGAATTATAGCATTATTTTGGGAAATTTGGTGTGAAAGGAATCTTAGAATTTTTGGAACCTCTAGCTCTCATAAAACAACTGCCAATATGTGGGAGGATTGTAAAATCCTTATAGGCAATTGGTGCAGTAGGGACTCTTATTTTAAAAATTATTCGGCTGCTACAATTGCTTTAAACCTTAGAAATTTCTGTAATTAG

mRNA sequence

ATGGCTTTATCTCTGTTCGAAAGAGCTTCGGGTCTCAAAATAAACTTATTGAAATCAGCTCTGGTGCCAGTGAATGTGTCCGTGAATAGAGCTAAAGAATGTGCTTCGTTTTGGGGTATTTCTTGCCACTCTCTCCCCCTCTCCTACTTGGGAGTTCCTCTTGGTGGCAATCCAAAATCCAACCTCTTTTGGCGCAACGTTGAAGATAAGATCCAAAAAAAGCTCAATAATTGGAAATATGCTCAGATATCAAAAAGTGGAAGACTCACTTTAATCAAGTCTACCCTTAGCAGTCTTCCTATTTATCAACTATCTGTTTTCCAAGCTCCTTCCTTGACGTGCAAAAACATTGAAAAATCCTGGAGAAAGTTCCTTTGGAAAGGTAATAACGGATCAGAAGGATCTCACCTAATCAACTGGACTAAAGTCTCTAAATCTAAAGAGGAGGGTAGGCTGGGTATCTCAAGGCTTCATGTGACAAATAAAGCCCTCTTAACTAAGTGGCTCTGGCGTTATCTCTCGGAACCTAATGCCCTTTGGAGGAGATTGATTCAATGCAAATATAAAGGCAACTATCCAGGAGACATTCCATCAAACATCTCCTCTAGTACTCCTAAAGCCCCGTGGAGATCTATCATTGACAACATCGATTGGTTCAAAAGTAATCAAAGTTGGGAACTGAATAATGGAGATCAAATCTCCTTCTGGTATTCTAATTGGTCTCTAGAAGGACGTCTCTCAACTGCCTATCCTAGACTTTTTGCTCTTACTCTTGACAAAGAAATCTCAGTTAAAGATGCGTGGAACACATTCGATAACCGATGGAACATAATTTTTAGAAGAGAGCTGAACGATAGAGAAAGAAGCAAATGGGCAAAAATTTTAGAGATTCTCCCTACTCCGAGATCTAATAGAGGATCAAGCAAGCTTACCTGGAATCCTGACAGCAATAACTCTTTCTCCATTGCATCCGCAAAAGCCTTGATCTCTCGGCAGCTGGACCAATCTCCAGGGGACCCTCGAGCAAAGCTTCTTGAGATTATATGGAAGTCCACCATTCCAATGAAGATCAAATTCTTCATGTGGTGCCTGATTCAAAGAAGAATAAATACGATGGAGGTTATTCAGCAAAGAATGCCCAACATTCCCCTTCAACCCAACTGGTGCGTACTTTGTAAGAAAGATAGTGAATCAGGAATCCACCTTTTTCTTCGATGCGAAGCTGTGAAACCCTTATGGTCCTTTCTCCAGCATTCTCTCAATTTCGCTCTCAGTACCGACGAACTGGAGGACGTGTTCTCCTTCTTCCATTCTCTAAAGTGCTCCATCCCGAAACACAAGGTCGTTTTTTGTGGAATTATAGCATTATTTTGGGAAATTTGGTGTGAAAGGAATCTTAGAATTTTTGGAACCTCTAGCTCTCATAAAACAACTGCCAATATGTGGGAGGATTGTAAAATCCTTATAGGCAATTGGTGCAGTAGGGACTCTTATTTTAAAAATTATTCGGCTGCTACAATTGCTTTAAACCTTAGAAATTTCTGTAATTAG

Coding sequence (CDS)

ATGGCTTTATCTCTGTTCGAAAGAGCTTCGGGTCTCAAAATAAACTTATTGAAATCAGCTCTGGTGCCAGTGAATGTGTCCGTGAATAGAGCTAAAGAATGTGCTTCGTTTTGGGGTATTTCTTGCCACTCTCTCCCCCTCTCCTACTTGGGAGTTCCTCTTGGTGGCAATCCAAAATCCAACCTCTTTTGGCGCAACGTTGAAGATAAGATCCAAAAAAAGCTCAATAATTGGAAATATGCTCAGATATCAAAAAGTGGAAGACTCACTTTAATCAAGTCTACCCTTAGCAGTCTTCCTATTTATCAACTATCTGTTTTCCAAGCTCCTTCCTTGACGTGCAAAAACATTGAAAAATCCTGGAGAAAGTTCCTTTGGAAAGGTAATAACGGATCAGAAGGATCTCACCTAATCAACTGGACTAAAGTCTCTAAATCTAAAGAGGAGGGTAGGCTGGGTATCTCAAGGCTTCATGTGACAAATAAAGCCCTCTTAACTAAGTGGCTCTGGCGTTATCTCTCGGAACCTAATGCCCTTTGGAGGAGATTGATTCAATGCAAATATAAAGGCAACTATCCAGGAGACATTCCATCAAACATCTCCTCTAGTACTCCTAAAGCCCCGTGGAGATCTATCATTGACAACATCGATTGGTTCAAAAGTAATCAAAGTTGGGAACTGAATAATGGAGATCAAATCTCCTTCTGGTATTCTAATTGGTCTCTAGAAGGACGTCTCTCAACTGCCTATCCTAGACTTTTTGCTCTTACTCTTGACAAAGAAATCTCAGTTAAAGATGCGTGGAACACATTCGATAACCGATGGAACATAATTTTTAGAAGAGAGCTGAACGATAGAGAAAGAAGCAAATGGGCAAAAATTTTAGAGATTCTCCCTACTCCGAGATCTAATAGAGGATCAAGCAAGCTTACCTGGAATCCTGACAGCAATAACTCTTTCTCCATTGCATCCGCAAAAGCCTTGATCTCTCGGCAGCTGGACCAATCTCCAGGGGACCCTCGAGCAAAGCTTCTTGAGATTATATGGAAGTCCACCATTCCAATGAAGATCAAATTCTTCATGTGGTGCCTGATTCAAAGAAGAATAAATACGATGGAGGTTATTCAGCAAAGAATGCCCAACATTCCCCTTCAACCCAACTGGTGCGTACTTTGTAAGAAAGATAGTGAATCAGGAATCCACCTTTTTCTTCGATGCGAAGCTGTGAAACCCTTATGGTCCTTTCTCCAGCATTCTCTCAATTTCGCTCTCAGTACCGACGAACTGGAGGACGTGTTCTCCTTCTTCCATTCTCTAAAGTGCTCCATCCCGAAACACAAGGTCGTTTTTTGTGGAATTATAGCATTATTTTGGGAAATTTGGTGTGAAAGGAATCTTAGAATTTTTGGAACCTCTAGCTCTCATAAAACAACTGCCAATATGTGGGAGGATTGTAAAATCCTTATAGGCAATTGGTGCAGTAGGGACTCTTATTTTAAAAATTATTCGGCTGCTACAATTGCTTTAAACCTTAGAAATTTCTGTAATTAG

Protein sequence

MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKSNLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKSWRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALWRRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNWSLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPTPRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFFMWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLWSFLQHSLNFALSTDELEDVFSFFHSLKCSIPKHKVVFCGIIALFWEIWCERNLRIFGTSSSHKTTANMWEDCKILIGNWCSRDSYFKNYSAATIALNLRNFCN

Homology

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BLAST of IVF0017280 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.7e-33
Identity = 95/348 (27.30%), Postives = 159/348 (45.69%), Query Frame = 0


Query: 69  DKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKSWRKFLWKG 128
           +++  +++ W+   +S +GRLTL K+ LSS+P++ +S    P      +++  R FLW  
Sbjct: 18  ERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGS 77

Query: 129 NNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALWRRLIQCKY 188
               +  HL+ W+KV   K+EG LG+      N+AL++K  WR L E N+LW  ++Q KY
Sbjct: 78  TAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 137

Query: 189 KGNYPGDIPSNISSSTPKAPWRSIIDNI-DWFKSNQSWELNNGDQISFWYSNWSLEGRLS 248
                 D    I   +  + WRSI   + D       W   +G QI FW   W + G+  
Sbjct: 138 HVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRW-VSGKPL 197

Query: 249 TAYPRLFALTLDKEISVKDAWNTFDNRWNI--IFRRELNDRERSKWAKILEILPTPRSNR 308
                    T    +  KD W      W+   I     N+      A +L+++   R   
Sbjct: 198 LELDNGERPTDCDTVVAKDLWIP-GRGWDFAKIDPYTTNNTRLELRAVVLDLVTGAR--- 257

Query: 309 GSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFFMWCLI 368
              +L+W    +  FS+ SA  +++  +D+ P    A     +WK  +P ++K F+W + 
Sbjct: 258 --DRLSWKFSQDGQFSVRSAYEMLT--VDEVPRPNMASFFNCLWKVRVPERVKTFLWLVG 317

Query: 369 QRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLW 414
            + + T E   +R  +     N C +CK   ES +H+   C A   +W
Sbjct: 318 NQAVMTEEERHRRHLS---ASNVCQVCKGGVESMLHVLRDCPAQLGIW 353

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BLAST of IVF0017280 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-10
Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 0


Query: 98  SLPIYQLSVFQAPSLTCKNIEKSWRKFLWKGNNGSEGSHLINWTKVSKSKE-EGRLGISR 157
           +LP+Y +S F+   L CK +  +  +F W           + W K+ KSKE +G LG   
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 158 LHVTNKALLTKWLWRYLSEPNALWRRLIQCKYKGNYPGDIPSNISSST-PKAPWRSIIDN 217
           L   N+ALL K  +R + +P+ L  RL++ +Y   +P       S  T P   WRSII  
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRY---FPHSSMMECSVGTRPSYAWRSIIHG 121

Query: 218 IDWFKSNQSWELNNGDQISFWYSNWSLE 244
            +         + +G     W   W ++
Sbjct: 122 RELLSRGLLRTIGDGIHTKVWLDRWIMD 146

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BLAST of IVF0017280 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 922.9 bits (2384), Expect = 5.8e-265
Identity = 443/516 (85.85%), Postives = 468/516 (90.70%), Query Frame = 0


Query: 1    MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
            MALSLFERASGLKINLLKSALVP+NVS  RAKECASFWGIS  SLPLSYLGVPLGGNPKS
Sbjct: 547  MALSLFERASGLKINLLKSALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKS 606

Query: 61   NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
             LFW NVE+KIQKKLNNWKYAQISK GRLTLIKSTLSSLP YQLSVFQAPSLTCKNIEK 
Sbjct: 607  RLFWSNVEEKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKF 666

Query: 121  WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
            WR FLWKGNN SEG HLINWTKV+KSK EG LGISR+HVTNKALLTKWLWRYLSEP ALW
Sbjct: 667  WRNFLWKGNNSSEGFHLINWTKVTKSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALW 726

Query: 181  RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
            RRLIQCKYKG YPGDIPSNISSST KAPWRSIIDN+DWF+SNQSW+LNNGDQISFWYSNW
Sbjct: 727  RRLIQCKYKGIYPGDIPSNISSSTSKAPWRSIIDNVDWFRSNQSWDLNNGDQISFWYSNW 786

Query: 241  SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
            S+EGRL TAYPRLFAL+LDK+I+VKDAWNT DN+W I FRRELNDRER+KWAKILEILP 
Sbjct: 787  SIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIRFRRELNDRERNKWAKILEILPK 846

Query: 301  PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
            PR N GSSK TW PDS NSFSIASAK LISRQLDQS GDP++KLLEIIWKSTIPMKIKFF
Sbjct: 847  PRYNSGSSKPTWIPDSKNSFSIASAKFLISRQLDQSSGDPQSKLLEIIWKSTIPMKIKFF 906

Query: 361  MWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLWSFLQHSL 420
            MWCLIQR+INTMEV+Q RMPNI LQP+WCVLCKKDSESG HLFL CEAVKPLWSFLQ++ 
Sbjct: 907  MWCLIQRKINTMEVVQHRMPNICLQPSWCVLCKKDSESGTHLFLHCEAVKPLWSFLQNAF 966

Query: 421  NFALSTDELEDVFSFFHSLKCSIPKHKVVFCGIIALFWEIWCERNLRIFGTSSSHKTTAN 480
            + ALSTD+LEDVF FF S  C  P  KVVFCGIIALFWEIWCERN RIFG  S HKTTAN
Sbjct: 967  SLALSTDDLEDVF-FFRSPHCFSPNRKVVFCGIIALFWEIWCERNRRIFGPPSPHKTTAN 1026

Query: 481  MWEDCKILIGNWCSRDSYFKNYSAATIALNLRNFCN 517
            MWE+CKILIGNWCSRDS+F+NYSAATIALNL NFCN
Sbjct: 1027 MWEECKILIGNWCSRDSHFRNYSAATIALNLSNFCN 1061

[Close]

BLAST of IVF0017280 vs. ExPASy TrEMBL
Match: A0A5A7TQI1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001110 PE=4 SV=1)

HSP 1 Score: 799.7 bits (2064), Expect = 7.4e-228
Identity = 389/391 (99.49%), Postives = 390/391 (99.74%), Query Frame = 0


Query: 1   MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
           MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS
Sbjct: 450 MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 509

Query: 61  NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
           NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS
Sbjct: 510 NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 569

Query: 121 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
           WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW
Sbjct: 570 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 629

Query: 181 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
           RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW
Sbjct: 630 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 689

Query: 241 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
           SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT
Sbjct: 690 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 749

Query: 301 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
           PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF
Sbjct: 750 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 809

Query: 361 MWCLIQRRINTMEVIQQRMPNIPLQPNWCVL 392
           MWCLIQRRINTMEVIQQRMPNIPLQPN C+L
Sbjct: 810 MWCLIQRRINTMEVIQQRMPNIPLQPN-CIL 839

[Close]

BLAST of IVF0017280 vs. ExPASy TrEMBL
Match: A0A5D3C3D0 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002020 PE=4 SV=1)

HSP 1 Score: 768.1 bits (1982), Expect = 2.4e-218
Identity = 381/447 (85.23%), Postives = 391/447 (87.47%), Query Frame = 0


Query: 1   MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
           MALSLFERASGLKINLLKSALVP+NVS+NRAKECASFWGIS HSLPLSYLGVPLGGNPKS
Sbjct: 229 MALSLFERASGLKINLLKSALVPMNVSLNRAKECASFWGISFHSLPLSYLGVPLGGNPKS 288

Query: 61  NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
           NLFWRNVEDKIQKKLNNWKYAQISK GRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS
Sbjct: 289 NLFWRNVEDKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 348

Query: 121 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
           WRKFLWKGNNGSEGSHLINWTKVSKSKEEG LGISRL VTNKALL+KWLWRYLSEPNALW
Sbjct: 349 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGGLGISRLQVTNKALLSKWLWRYLSEPNALW 408

Query: 181 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
           RRLIQCKYKG YPGDI SN SSST KAPWRSIIDNIDWFKSNQSW+LNNGDQISFWYSNW
Sbjct: 409 RRLIQCKYKGKYPGDITSNNSSSTSKAPWRSIIDNIDWFKSNQSWDLNNGDQISFWYSNW 468

Query: 241 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
           S EGRLSTAYPRLFALTLDKEIS                                 ILPT
Sbjct: 469 SQEGRLSTAYPRLFALTLDKEIS---------------------------------ILPT 528

Query: 301 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
           PRSN+GSSK TW PD NNSFSIASAK LIS+QLDQ+PGDPRAKLLEIIWKS+IPMKIKFF
Sbjct: 529 PRSNKGSSKPTWIPDCNNSFSIASAKVLISQQLDQTPGDPRAKLLEIIWKSSIPMKIKFF 588

Query: 361 MWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLWSFLQHSL 420
           MWCLIQR+INTMEVIQQRM N  LQPNWCVLC KDSESG HLFL CEAVKPLWS LQHSL
Sbjct: 589 MWCLIQRKINTMEVIQQRMSNTLLQPNWCVLCNKDSESGNHLFLLCEAVKPLWSLLQHSL 642

Query: 421 NFALSTDELEDVFSFFHSLKCSIPKHK 448
           NFAL TDE ED+FSFF SLKCSIPKHK
Sbjct: 649 NFALGTDEFEDLFSFFRSLKCSIPKHK 642

[Close]

BLAST of IVF0017280 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 745.0 bits (1922), Expect = 2.2e-211
Identity = 361/387 (93.28%), Postives = 371/387 (95.87%), Query Frame = 0


Query: 1    MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
            MALSLFERASGLKINLLKSALVPVNVS+ RAKECASFWGISCHSLPLSYLGVPLGGNPKS
Sbjct: 1371 MALSLFERASGLKINLLKSALVPVNVSLKRAKECASFWGISCHSLPLSYLGVPLGGNPKS 1430

Query: 61   NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
            NLFWRNVEDKIQKKLNNWKYAQISK GRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEK 
Sbjct: 1431 NLFWRNVEDKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKL 1490

Query: 121  WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
            WRKFLWKGNNGSEGSHLINWTKVSKSKEEG LGISRL+VTNKALL+KWLWRYLSEPNALW
Sbjct: 1491 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGGLGISRLNVTNKALLSKWLWRYLSEPNALW 1550

Query: 181  RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
            RRLIQCKYKG +PGDIPSNISSST KAPWRSIID+ DWFKSNQSW+LNNGDQISFWYSNW
Sbjct: 1551 RRLIQCKYKGKFPGDIPSNISSSTSKAPWRSIIDSTDWFKSNQSWDLNNGDQISFWYSNW 1610

Query: 241  SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
            S EGRLSTAYPRLFALTLDKEISVKDAWNTFDN+WNIIFRRELNDRER  W KILEILPT
Sbjct: 1611 SQEGRLSTAYPRLFALTLDKEISVKDAWNTFDNQWNIIFRRELNDRERCNWEKILEILPT 1670

Query: 301  PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
            PRSNRGSSK TW PDSNNSFSIASAK LISRQLDQ+PGDPRAKLLEIIWKS+IPMKIKFF
Sbjct: 1671 PRSNRGSSKPTWIPDSNNSFSIASAKVLISRQLDQTPGDPRAKLLEIIWKSSIPMKIKFF 1730

Query: 361  MWCLIQRRINTMEVIQQRMPNIPLQPN 388
            MWCLIQRRINTMEVIQQ+MPN  LQPN
Sbjct: 1731 MWCLIQRRINTMEVIQQKMPNTLLQPN 1757

[Close]

BLAST of IVF0017280 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 2.9e-208
Identity = 350/478 (73.22%), Postives = 395/478 (82.64%), Query Frame = 0


Query: 39   GISCHSLPLSYLGVPLGGNPKSNLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSS 98
            GI CH+LPL+YLGVPLGGNPKSNLFWRN+ED+IQKKL+NWKYA ISK GRLTLIKSTLSS
Sbjct: 1314 GILCHTLPLTYLGVPLGGNPKSNLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSS 1373

Query: 99   LPIYQLSVFQAPSLTCKNIEKSWRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLH 158
            LPIY+LSVFQAPS T KNIEK WR FLWKG+ G +GSHLINW+ V+K KEEG LGISRL 
Sbjct: 1374 LPIYKLSVFQAPSSTYKNIEKLWRNFLWKGSCGLKGSHLINWSIVTKPKEEGGLGISRLQ 1433

Query: 159  VTNKALLTKWLWRYLSEPNALWRRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDW 218
            VTN+ALL+KWLWRY SEPN+LWRRLI  KYKG +PGD+PSNISSS+ KAPWRSII+NIDW
Sbjct: 1434 VTNQALLSKWLWRYYSEPNSLWRRLIHIKYKGKHPGDLPSNISSSSSKAPWRSIINNIDW 1493

Query: 219  FKSNQSWELNNGDQISFWYSNWSLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNII 278
            FKSNQ W+LNNGDQISFWYSNWS EG LSTAYPRLFAL++DKE S+KD WN+ +N+W I 
Sbjct: 1494 FKSNQGWDLNNGDQISFWYSNWSPEGCLSTAYPRLFALSMDKESSIKDVWNSNNNQWEIT 1553

Query: 279  FRRELNDRERSKWAKILEILPTPRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPG 338
            FRR+LNDRE S W KILE LP  R+NRG SK TW PDS   FSIASAK+ IS Q D+S  
Sbjct: 1554 FRRKLNDRELSTWQKILENLPILRTNRGPSKPTWIPDSKKFFSIASAKSCISHQPDRSVA 1613

Query: 339  DPRAKLLEIIWKSTIPMKIKFFMWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSES 398
            +PR KLL +IWK+ +PMKIKFFMWCL+QR++NTMEV         LQPNWCVLCKK SE+
Sbjct: 1614 NPRVKLLNLIWKTHVPMKIKFFMWCLVQRKLNTMEVXTL------LQPNWCVLCKKKSET 1673

Query: 399  GIHLFLRCEAVKPLWSFLQHSLNFALSTDELEDVFSFFHSLKCSIPKHKVVFCGIIALFW 458
            G HLFL C+ VKPLWS L  SLNFA  +D+ E +FSFF SL  S+PKHKVVFCG+IA+ W
Sbjct: 1674 GAHLFLHCDLVKPLWSLLHRSLNFAPISDDFEAMFSFFLSLNQSLPKHKVVFCGMIAILW 1733

Query: 459  EIWCERNLRIFGTSSSHKTTANMWEDCKILIGNWCSRDSYFKNYSAATIALNLRNFCN 517
             IW ERN RIF T S  K+ AN+WEDCKILIGNW SRD  FKNYSAATIALNL  FCN
Sbjct: 1734 RIWTERNNRIFDTLSYQKSIANLWEDCKILIGNWYSRDPTFKNYSAATIALNLNAFCN 1785

[Close]

BLAST of IVF0017280 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 920 bits (2377), Expect = 0.0
Identity = 443/516 (85.85%), Postives = 468/516 (90.70%), Query Frame = 0


Query: 1    MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
            MALSLFERASGLKINLLKSALVP+NVS  RAKECASFWGIS  SLPLSYLGVPLGGNPKS
Sbjct: 547  MALSLFERASGLKINLLKSALVPMNVSEIRAKECASFWGISSQSLPLSYLGVPLGGNPKS 606

Query: 61   NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
             LFW NVE+KIQKKLNNWKYAQISK GRLTLIKSTLSSLP YQLSVFQAPSLTCKNIEK 
Sbjct: 607  RLFWSNVEEKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPTYQLSVFQAPSLTCKNIEKF 666

Query: 121  WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
            WR FLWKGNN SEG HLINWTKV+KSK EG LGISR+HVTNKALLTKWLWRYLSEP ALW
Sbjct: 667  WRNFLWKGNNSSEGFHLINWTKVTKSKAEGGLGISRVHVTNKALLTKWLWRYLSEPKALW 726

Query: 181  RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
            RRLIQCKYKG YPGDIPSNISSST KAPWRSIIDN+DWF+SNQSW+LNNGDQISFWYSNW
Sbjct: 727  RRLIQCKYKGIYPGDIPSNISSSTSKAPWRSIIDNVDWFRSNQSWDLNNGDQISFWYSNW 786

Query: 241  SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
            S+EGRL TAYPRLFAL+LDK+I+VKDAWNT DN+W I FRRELNDRER+KWAKILEILP 
Sbjct: 787  SIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIRFRRELNDRERNKWAKILEILPK 846

Query: 301  PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
            PR N GSSK TW PDS NSFSIASAK LISRQLDQS GDP++KLLEIIWKSTIPMKIKFF
Sbjct: 847  PRYNSGSSKPTWIPDSKNSFSIASAKFLISRQLDQSSGDPQSKLLEIIWKSTIPMKIKFF 906

Query: 361  MWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLWSFLQHSL 420
            MWCLIQR+INTMEV+Q RMPNI LQP+WCVLCKKDSESG HLFL CEAVKPLWSFLQ++ 
Sbjct: 907  MWCLIQRKINTMEVVQHRMPNICLQPSWCVLCKKDSESGTHLFLHCEAVKPLWSFLQNAF 966

Query: 421  NFALSTDELEDVFSFFHSLKCSIPKHKVVFCGIIALFWEIWCERNLRIFGTSSSHKTTAN 480
            + ALSTD+LEDVF FF S  C  P  KVVFCGIIALFWEIWCERN RIFG  S HKTTAN
Sbjct: 967  SLALSTDDLEDVF-FFRSPHCFSPNRKVVFCGIIALFWEIWCERNRRIFGPPSPHKTTAN 1026

Query: 481  MWEDCKILIGNWCSRDSYFKNYSAATIALNLRNFCN 516
            MWE+CKILIGNWCSRDS+F+NYSAATIALNL NFCN
Sbjct: 1027 MWEECKILIGNWCSRDSHFRNYSAATIALNLSNFCN 1061

[Close]

BLAST of IVF0017280 vs. NCBI nr
Match: KAA0045138.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK23599.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 798 bits (2061), Expect = 3.68e-282
Identity = 389/391 (99.49%), Postives = 390/391 (99.74%), Query Frame = 0


Query: 1   MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
           MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS
Sbjct: 450 MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 509

Query: 61  NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
           NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS
Sbjct: 510 NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 569

Query: 121 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
           WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW
Sbjct: 570 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 629

Query: 181 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
           RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW
Sbjct: 630 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 689

Query: 241 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
           SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT
Sbjct: 690 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 749

Query: 301 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
           PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF
Sbjct: 750 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 809

Query: 361 MWCLIQRRINTMEVIQQRMPNIPLQPNWCVL 391
           MWCLIQRRINTMEVIQQRMPNIPLQPN C+L
Sbjct: 810 MWCLIQRRINTMEVIQQRMPNIPLQPN-CIL 839

[Close]

BLAST of IVF0017280 vs. NCBI nr
Match: TYK05718.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 765 bits (1975), Expect = 5.42e-272
Identity = 381/447 (85.23%), Postives = 391/447 (87.47%), Query Frame = 0


Query: 1   MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
           MALSLFERASGLKINLLKSALVP+NVS+NRAKECASFWGIS HSLPLSYLGVPLGGNPKS
Sbjct: 229 MALSLFERASGLKINLLKSALVPMNVSLNRAKECASFWGISFHSLPLSYLGVPLGGNPKS 288

Query: 61  NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
           NLFWRNVEDKIQKKLNNWKYAQISK GRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS
Sbjct: 289 NLFWRNVEDKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 348

Query: 121 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
           WRKFLWKGNNGSEGSHLINWTKVSKSKEEG LGISRL VTNKALL+KWLWRYLSEPNALW
Sbjct: 349 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGGLGISRLQVTNKALLSKWLWRYLSEPNALW 408

Query: 181 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
           RRLIQCKYKG YPGDI SN SSST KAPWRSIIDNIDWFKSNQSW+LNNGDQISFWYSNW
Sbjct: 409 RRLIQCKYKGKYPGDITSNNSSSTSKAPWRSIIDNIDWFKSNQSWDLNNGDQISFWYSNW 468

Query: 241 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
           S EGRLSTAYPRLFALTLDKEIS                                 ILPT
Sbjct: 469 SQEGRLSTAYPRLFALTLDKEIS---------------------------------ILPT 528

Query: 301 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
           PRSN+GSSK TW PD NNSFSIASAK LIS+QLDQ+PGDPRAKLLEIIWKS+IPMKIKFF
Sbjct: 529 PRSNKGSSKPTWIPDCNNSFSIASAKVLISQQLDQTPGDPRAKLLEIIWKSSIPMKIKFF 588

Query: 361 MWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLWSFLQHSL 420
           MWCLIQR+INTMEVIQQRM N  LQPNWCVLC KDSESG HLFL CEAVKPLWS LQHSL
Sbjct: 589 MWCLIQRKINTMEVIQQRMSNTLLQPNWCVLCNKDSESGNHLFLLCEAVKPLWSLLQHSL 642

Query: 421 NFALSTDELEDVFSFFHSLKCSIPKHK 447
           NFAL TDE ED+FSFF SLKCSIPKHK
Sbjct: 649 NFALGTDEFEDLFSFFRSLKCSIPKHK 642

[Close]

BLAST of IVF0017280 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 743 bits (1919), Expect = 2.14e-249
Identity = 361/387 (93.28%), Postives = 371/387 (95.87%), Query Frame = 0


Query: 1    MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
            MALSLFERASGLKINLLKSALVPVNVS+ RAKECASFWGISCHSLPLSYLGVPLGGNPKS
Sbjct: 1371 MALSLFERASGLKINLLKSALVPVNVSLKRAKECASFWGISCHSLPLSYLGVPLGGNPKS 1430

Query: 61   NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
            NLFWRNVEDKIQKKLNNWKYAQISK GRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEK 
Sbjct: 1431 NLFWRNVEDKIQKKLNNWKYAQISKGGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKL 1490

Query: 121  WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
            WRKFLWKGNNGSEGSHLINWTKVSKSKEEG LGISRL+VTNKALL+KWLWRYLSEPNALW
Sbjct: 1491 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGGLGISRLNVTNKALLSKWLWRYLSEPNALW 1550

Query: 181  RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
            RRLIQCKYKG +PGDIPSNISSST KAPWRSIID+ DWFKSNQSW+LNNGDQISFWYSNW
Sbjct: 1551 RRLIQCKYKGKFPGDIPSNISSSTSKAPWRSIIDSTDWFKSNQSWDLNNGDQISFWYSNW 1610

Query: 241  SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
            S EGRLSTAYPRLFALTLDKEISVKDAWNTFDN+WNIIFRRELNDRER  W KILEILPT
Sbjct: 1611 SQEGRLSTAYPRLFALTLDKEISVKDAWNTFDNQWNIIFRRELNDRERCNWEKILEILPT 1670

Query: 301  PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
            PRSNRGSSK TW PDSNNSFSIASAK LISRQLDQ+PGDPRAKLLEIIWKS+IPMKIKFF
Sbjct: 1671 PRSNRGSSKPTWIPDSNNSFSIASAKVLISRQLDQTPGDPRAKLLEIIWKSSIPMKIKFF 1730

Query: 361  MWCLIQRRINTMEVIQQRMPNIPLQPN 387
            MWCLIQRRINTMEVIQQ+MPN  LQPN
Sbjct: 1731 MWCLIQRRINTMEVIQQKMPNTLLQPN 1757

[Close]

BLAST of IVF0017280 vs. NCBI nr
Match: KAA0050814.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK08531.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 696 bits (1796), Expect = 3.79e-247
Identity = 344/516 (66.67%), Postives = 386/516 (74.81%), Query Frame = 0


Query: 1   MALSLFERASGLKINLLKSALVPVNVSVNRAKECASFWGISCHSLPLSYLGVPLGGNPKS 60
           MA+SLFE+ASGLKINL KS +VPVNV   RA ECAS W ISCH+LPL+YLGVPLGGNPKS
Sbjct: 53  MAISLFEKASGLKINLSKSVMVPVNVPWPRALECASSWEISCHTLPLTYLGVPLGGNPKS 112

Query: 61  NLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQLSVFQAPSLTCKNIEKS 120
            LFWRN+ED+IQKKL+NWKYA ISK GRLTLIKSTLSSLPIYQLSVFQAPS T KNIEK 
Sbjct: 113 KLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKSTLSSLPIYQLSVFQAPSSTYKNIEKL 172

Query: 121 WRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKALLTKWLWRYLSEPNALW 180
           WR FLWKG+ GS+GSHLINW  V+K KEEG LGIS+L +TN+ALL+KWLWRY SEPN+LW
Sbjct: 173 WRNFLWKGSCGSKGSHLINWAIVTKPKEEGELGISKLQITNQALLSKWLWRYYSEPNSLW 232

Query: 181 RRLIQCKYKGNYPGDIPSNISSSTPKAPWRSIIDNIDWFKSNQSWELNNGDQISFWYSNW 240
           RRLI  KY+G +PGDIPSNISSS+PKAPWRSII+NIDWFK NQ W+LNNGDQISFW+SNW
Sbjct: 233 RRLIHIKYQGKHPGDIPSNISSSSPKAPWRSIINNIDWFKRNQGWDLNNGDQISFWFSNW 292

Query: 241 SLEGRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPT 300
           S EG L                                                    P 
Sbjct: 293 SPEGNL----------------------------------------------------PV 352

Query: 301 PRSNRGSSKLTWNPDSNNSFSIASAKALISRQLDQSPGDPRAKLLEIIWKSTIPMKIKFF 360
           PR+NRG SK TW PDS  SF IASAK+ I  Q + S  +PR KLL++IWKS IPMKIKFF
Sbjct: 353 PRTNRGPSKPTWIPDSKKSFFIASAKSCIYHQPELSIANPRVKLLDLIWKSFIPMKIKFF 412

Query: 361 MWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDSESGIHLFLRCEAVKPLWSFLQHSL 420
           +WCL+QR++NTMEVIQQRMPN  LQPNWCVLCKKDSE+G HLF  C+ VK LWS LQ SL
Sbjct: 413 LWCLVQRKLNTMEVIQQRMPNSLLQPNWCVLCKKDSETGAHLFFHCDLVKHLWSLLQRSL 472

Query: 421 NFALSTDELEDVFSFFHSLKCSIPKHKVVFCGIIALFWEIWCERNLRIFGTSSSHKTTAN 480
           NFA  +D+ E +FSFF SL  S+PKHKVVFCG+IA+ W IW ERN RIF T S  K+  N
Sbjct: 473 NFAPFSDDFEALFSFFLSLNQSLPKHKVVFCGLIAVLWGIWAERNNRIFDTLSYQKSINN 516

Query: 481 MWEDCKILIGNWCSRDSYFKNYSAATIALNLRNFCN 516
           +WED KILIGNWCSRD  FKNYSA TIALNL   CN
Sbjct: 533 LWEDYKILIGNWCSRDPTFKNYSATTIALNLNALCN 516

[Close]

BLAST of IVF0017280 vs. TAIR 10
Match: AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-16
Identity = 85/372 (22.85%), Postives = 144/372 (38.71%), Query Frame = 0


Query: 44  SLPLSYLGVPLGGNPKSNLFWRNVEDKIQKKLNNWKYAQISKSGRLTLIKSTLSSLPIYQ 103
           +LP+ YLG+PL     +   +  + +KI+ ++  W    +S +GRL LI S + SL  + 
Sbjct: 22  ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFW 81

Query: 104 LSVFQAPSLTCKNIEKSWRKFLWKGNNGSEGSHLINWTKVSKSKEEGRLGISRLHVTNKA 163
           +S F+ PS   K I+     FLW G   +     + W+ V   K+EG LGI  L   NK 
Sbjct: 82  MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANK- 141

Query: 164 LLTKWLWRYLSEPNALWRRLIQCKYKGNYPGDIPSNISSSTPKAP--WRSIIDNIDWFKS 223
                         + W                  +IS +T      W+ I+ +      
Sbjct: 142 -------------GSFW------------------SISGNTTLGSWMWKKILKHRALASG 201

Query: 224 NQSWELNNGDQISFWYSNWSLEGRL--STAYPRLFALTLDKEISVKDAWNTFDNRWNIIF 283
               +++NG   SFW+ NWS  GRL   T +     + +    SV +A         ++ 
Sbjct: 202 FVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEA---------VVN 261

Query: 284 RRELNDRERSKWAKILEILPTPRS---NRGSSKLTWNPDSNNSFSIASAKALISRQLDQS 343
            R    R      +I +++   R      G   + W  + +            +++   +
Sbjct: 262 HRPRRHR-HDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGD-----IFKPCFNTKETWAA 321

Query: 344 PGDPRAKL--LEIIWKSTIPMKIKFFMWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKK 403
             +P+ K+   + +W S    K     W  I+ R+ T + +           + CVLC  
Sbjct: 322 TREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAG---ADSSCVLCHH 343

Query: 404 DSESGIHLFLRC 407
             E+  HLF  C
Sbjct: 382 LVETRDHLFFTC 343

[Close]

BLAST of IVF0017280 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 69.7 bits (169), Expect = 7.8e-12
Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 0


Query: 98  SLPIYQLSVFQAPSLTCKNIEKSWRKFLWKGNNGSEGSHLINWTKVSKSKE-EGRLGISR 157
           +LP+Y +S F+   L CK +  +  +F W           + W K+ KSKE +G LG   
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 158 LHVTNKALLTKWLWRYLSEPNALWRRLIQCKYKGNYPGDIPSNISSST-PKAPWRSIIDN 217
           L   N+ALL K  +R + +P+ L  RL++ +Y   +P       S  T P   WRSII  
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRY---FPHSSMMECSVGTRPSYAWRSIIHG 121

Query: 218 IDWFKSNQSWELNNGDQISFWYSNWSLE 244
            +         + +G     W   W ++
Sbjct: 122 RELLSRGLLRTIGDGIHTKVWLDRWIMD 146

The following BLAST results are available for this feature:

BLAST of IVF0017280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	2.7e-33	27.30	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]
P93295	1.1e-10	29.05	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of IVF0017280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTK1	5.8e-265	85.85	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TQI1	7.4e-228	99.49	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C3D0	2.4e-218	85.23	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BLV7	2.2e-211	93.28	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BL61	2.9e-208	73.22	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0017280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046762.1	0.0	85.85	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0045138.1	3.68e-282	99.49	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK235...	[more]
TYK05718.1	5.42e-272	85.23	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYJ99315.1	2.14e-249	93.28	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0050814.1	3.79e-247	66.67	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK085...	[more]

BLAST of IVF0017280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24255.1	1.4e-16	22.85	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
ATMG00310.1	7.8e-12	29.05	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 339..413 e-value: 4.0E-16 score: 59.5
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 3..414
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 3..414

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017280.2	IVF0017280.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0003953	NAD+ nucleosidase activity