IVF0017179 (gene) Melon (IVF77) v1

Overview
NameIVF0017179
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr03: 13616613 .. 13617025 (-)
RNA-Seq ExpressionIVF0017179
SyntenyIVF0017179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACGAGGAGTTCCCATCAATGTATAGCCAGGGGATTGATATGTCCTAGGAAGATGTACGCACATCACGACCTGCGTCTGAGGGTAGGGCCGGATCAAGTGGATCGAAAAGGAAGAGAGGAAGCCAGCGAGAGGTCGAGCTTGATGTCATACATATGGCGCTGGAGTGTATGAACGACGAACTTAGGACGATTGTGGAGTGGCCTGCATGTGCCCTTGTCAATGACAACCATGTGCGACAGGAATTCTTTCACATATTGCATGAGATGACGGAACTAACGAGTTTGGATAGGACGTTGTTGCAAAGGCACCTTTTGTCTCATATGGACGACATGCGGGGTTTCGTACTGATGCCTAAGGATGAGAGGAAGGGCTTTTGTAGAGTCATCGTACGAGACGTCTCCAAATAG

mRNA sequence

ATGGGAACGAGGAGTTCCCATCAATGTATAGCCAGGGGATTGATATGTCCTAGGAAGATGTACGCACATCACGACCTGCGTCTGAGGGTAGGGCCGGATCAACGAGAGGTCGAGCTTGATGTCATACATATGGCGCTGGAGTGTATGAACGACGAACTTAGGACGATTGTGGAGTGGCCTGCATGTGCCCTTGTCAATGACAACCATGTGCGACAGGAATTCTTTCACATATTGCATGAGATGACGGAACTAACGAGTTTGGATAGGACGTTGTTGCAAAGGCACCTTTTGTCTCATATGGACGACATGCGGGGTTTCGTACTGATGCCTAAGGATGAGAGGAAGGGCTTTTGTAGAGTCATCGTACGAGACGTCTCCAAATAG

Coding sequence (CDS)

ATGGGAACGAGGAGTTCCCATCAATGTATAGCCAGGGGATTGATATGTCCTAGGAAGATGTACGCACATCACGACCTGCGTCTGAGGGTAGGGCCGGATCAACGAGAGGTCGAGCTTGATGTCATACATATGGCGCTGGAGTGTATGAACGACGAACTTAGGACGATTGTGGAGTGGCCTGCATGTGCCCTTGTCAATGACAACCATGTGCGACAGGAATTCTTTCACATATTGCATGAGATGACGGAACTAACGAGTTTGGATAGGACGTTGTTGCAAAGGCACCTTTTGTCTCATATGGACGACATGCGGGGTTTCGTACTGATGCCTAAGGATGAGAGGAAGGGCTTTTGTAGAGTCATCGTACGAGACGTCTCCAAATAG

Protein sequence

MGTRSSHQCIARGLICPRKMYAHHDLRLRVGPDQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
Homology
BLAST of IVF0017179 vs. ExPASy TrEMBL
Match: A0A5D3CVN5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00800 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 34  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 93
           QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ
Sbjct: 112 QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 171

Query: 94  RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 128
           RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
Sbjct: 172 RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 205

BLAST of IVF0017179 vs. ExPASy TrEMBL
Match: A0A5D3C1X3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003370 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 33  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLL 92
           +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LL
Sbjct: 142 NQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHEMSELTSLDRALL 201

Query: 93  QRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 128
           QRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Sbjct: 202 QRHLLSRMDDMQGFVLMPENERKGFCRVILRDISK 236

BLAST of IVF0017179 vs. ExPASy TrEMBL
Match: A0A5A7VI32 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold32G00060 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 33  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLL 92
           +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LL
Sbjct: 146 NQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHEMSELTSLDRALL 205

Query: 93  QRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 128
           QRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Sbjct: 206 QRHLLSRMDDMQGFVLMPENERKGFCRVILRDISK 240

BLAST of IVF0017179 vs. ExPASy TrEMBL
Match: A0A5D3BV29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00950 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 73/92 (79.35%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 34  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 93
           QR+ EL+VIHMALEC ND+LRTIV+WPACAL NDNHVR+EFF IL EM ELTSLDR LLQ
Sbjct: 18  QRKAELEVIHMALECTNDQLRTIVDWPACALANDNHVREEFFCILLEMPELTSLDRALLQ 77

Query: 94  RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDV 126
           RHLLS MDD+ GFVLMP+DER+GFCRVI+RD+
Sbjct: 78  RHLLSRMDDLWGFVLMPEDEREGFCRVILRDI 109

BLAST of IVF0017179 vs. ExPASy TrEMBL
Match: A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.5e-33
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 0

Query: 34  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 93
           QREVE+ VIHM LEC ND+L+ I EWPAC L NDNHV QEFF ILHEM ELT LDR+LLQ
Sbjct: 264 QREVEIKVIHMVLECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQ 323

Query: 94  RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 128
           RHLLSHM DMRGF  MP DER  FCRVI+RD+S+
Sbjct: 324 RHLLSHMGDMRGFKQMPNDERASFCRVILRDISR 357

BLAST of IVF0017179 vs. NCBI nr
Match: KAA0049603.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15961.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 3.01e-61
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 34  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 93
           QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ
Sbjct: 112 QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 171

Query: 94  RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 127
           RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK
Sbjct: 172 RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 205

BLAST of IVF0017179 vs. NCBI nr
Match: TYK05827.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 3.71e-49
Identity = 77/103 (74.76%), Postives = 93/103 (90.29%), Query Frame = 0

Query: 25  DLRLRVGPDQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTEL 84
           +L+ + G +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+EL
Sbjct: 135 ELKRKKG-NQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHEMSEL 194

Query: 85  TSLDRTLLQRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 127
           TSLDR LLQRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Sbjct: 195 TSLDRALLQRHLLSRMDDMQGFVLMPENERKGFCRVILRDISK 236

BLAST of IVF0017179 vs. NCBI nr
Match: KAA0066016.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 5.90e-49
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 0

Query: 33  DQREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLL 92
           +QRE EL++IHM LEC ND+LRTIV+W ACAL+NDNHV +EFFHILHEM+ELTSLDR LL
Sbjct: 146 NQREAELEIIHMVLECTNDQLRTIVDWLACALINDNHVHREFFHILHEMSELTSLDRALL 205

Query: 93  QRHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 127
           QRHLLS MDDM+GFVLMP++ERKGFCRVI+RD+SK
Sbjct: 206 QRHLLSRMDDMQGFVLMPENERKGFCRVILRDISK 240

BLAST of IVF0017179 vs. NCBI nr
Match: KAA0050378.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03591.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (395), Expect = 1.02e-46
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 0

Query: 34  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 93
           QR+ EL+VIHMALEC ND+LRTIV+WPACAL NDNHVR+EFF IL EM ELTSLDR LLQ
Sbjct: 18  QRKAELEVIHMALECTNDQLRTIVDWPACALANDNHVREEFFCILLEMPELTSLDRALLQ 77

Query: 94  RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 127
           RHLLS MDD+ GFVLMP+DER+GFCRVI+RD+ +
Sbjct: 78  RHLLSRMDDLWGFVLMPEDEREGFCRVILRDIFR 111

BLAST of IVF0017179 vs. NCBI nr
Match: TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 2.35e-42
Identity = 67/94 (71.28%), Postives = 82/94 (87.23%), Query Frame = 0

Query: 34  QREVELDVIHMALECMNDELRTIVEWPACALVNDNHVRQEFFHILHEMTELTSLDRTLLQ 93
           QREV+++ IH+AL+  N++L+ I EWPACALVNDNHVR EFF IL EM ELTSLDR LLQ
Sbjct: 71  QREVDVEGIHLALDQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPELTSLDRALLQ 130

Query: 94  RHLLSHMDDMRGFVLMPKDERKGFCRVIVRDVSK 127
           RHLLS MDD+RGFVLMP+DER GFCRV++RD+++
Sbjct: 131 RHLLSRMDDLRGFVLMPEDERDGFCRVLLRDITR 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVN51.2e-46100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1X31.3e-3778.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VI321.3e-3778.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BV291.4e-3479.35Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V0267.5e-3374.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0049603.13.01e-61100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK15961.1 retrotransposon p... [more]
TYK05827.13.71e-4974.76retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066016.15.90e-4978.95retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050378.11.02e-4677.66retrotransposon protein [Cucumis melo var. makuwa] >TYK03591.1 retrotransposon p... [more]
TYK29656.12.35e-4271.28retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017179.2IVF0017179.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding