IVF0017126 (gene) Melon (IVF77) v1

Overview
NameIVF0017126
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr09: 16109817 .. 16110552 (+)
RNA-Seq ExpressionIVF0017126
SyntenyIVF0017126
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGCCCGTCCAACAATGGTTTTGGCTGGAATAATGAATTGAAGTGCACTGTTGCCAAAAAGGATGAATTCGACAATTGGGTGAAGGTACGCTGTCTTTTCCTTTACTCGTCTATAATAAAAGATAAACTAAACTTCATCCACTTTAACACTTGAACAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGTAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTACTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCTGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGATGGTCAGCCTGCAGAGACTGTTGACATAATTCAAAATGCCATGGAGTACACTAATGATCAGCCCAACCGCATTACAGACGGGTCGATCTTAAGGAATCAAGATGAAGCACGATACGGTAAGAGGTCGTTCGACAATTACAGGCCATCCCTGAACTTATAGAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACAGTGATTCTCCAAGAAAACCCATGA

mRNA sequence

ATGCAAGGCCCGTCCAACAATGGTTTTGGCTGGAATAATGAATTGAAGTGCACTGTTGCCAAAAAGGATGAATTCGACAATTGGGTGAAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGTAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTACTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCTGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGATGGTCAGCCTGCAGAGACTAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACAGTGATTCTCCAAGAAAACCCATGA

Coding sequence (CDS)

ATGCAAGGCCCGTCCAACAATGGTTTTGGCTGGAATAATGAATTGAAGTGCACTGTTGCCAAAAAGGATGAATTCGACAATTGGGTGAAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGTAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTACTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCTGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGATGGTCAGCCTGCAGAGACTAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACAGTGATTCTCCAAGAAAACCCATGA

Protein sequence

MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDERALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQENP
Homology
BLAST of IVF0017126 vs. ExPASy TrEMBL
Match: A0A5A7VL62 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00460 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.6e-73
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER
Sbjct: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60

Query: 61  ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120
           ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA
Sbjct: 61  ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120

Query: 121 GQRGRGMVSLQRLI 135
           GQRGRGMVSLQRL+
Sbjct: 121 GQRGRGMVSLQRLL 134

BLAST of IVF0017126 vs. ExPASy TrEMBL
Match: A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M+GP+ +GFGWN+E KC V +K+ FD+WVK+HP AK LLN+SFPHY+ LSY+F +   +R
Sbjct: 83  MRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGK---DR 142

Query: 61  ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAIN--LSCQVM 120
           A+G         GSN    YE       ++     M+SQGL+MS +E +     L  +  
Sbjct: 143 AMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEDA 202

Query: 121 VGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 173
               Q   R   ++    L+++C  MR+LM NVDDMKAFLEV D +K+ YC+ ILQEN
Sbjct: 203 SQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQEN 257

BLAST of IVF0017126 vs. ExPASy TrEMBL
Match: A0A5A7T5D2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001280 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 86/195 (44.10%), Postives = 114/195 (58.46%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIF--RRACD 60
           M+GP+ +GFGWN+E KC VA+K+ FDNWVK+H AAK LLN+ FP+Y+ LSY+F   RA D
Sbjct: 1   MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATD 60

Query: 61  ERALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVG-- 120
            +A       GSN P GYE  A     +M    M+SQGLNMS +E +    + +V  G  
Sbjct: 61  GQA-ESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNMSPDELMEAG-NARVSEGRY 120

Query: 121 MLQAGQRGRG-------------------MVSLQRLINKCLCMRVLMHNVDDMKAFLEVS 173
           +    +R RG                    +    L+++C  MR+LM NVDDMKAFLEV 
Sbjct: 121 VSSGSKRKRGGQAEDNASQTRQEVVRQLEAILELTLMDRCRLMRILMRNVDDMKAFLEVP 180

BLAST of IVF0017126 vs. ExPASy TrEMBL
Match: A0A5D3D7X4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00510 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 79/177 (44.63%), Postives = 106/177 (59.89%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M GP  +GFG N+E KC VA+K+ FD+WVK+HPA K LLN+SF HY+ LSY+F +   +R
Sbjct: 224 MPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSYVFGK---DR 283

Query: 61  ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLS-CQVMV 120
           A G         GSN   GY+  AT    +   P M+SQGLNM  ++ + I  +  Q   
Sbjct: 284 ATGGRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTARHQDAS 343

Query: 121 GMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 173
              Q   R    +    L+++C  MR+LM NVDDMKAFL V D +K+ YC++I QEN
Sbjct: 344 QTRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLNVPDNMKYPYCSIIFQEN 397

BLAST of IVF0017126 vs. ExPASy TrEMBL
Match: A0A5D3DB07 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001020 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 73/178 (41.01%), Postives = 110/178 (61.80%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRR-ACDE 60
           M+GPS + FGWN+E KC + + D  DNWV+ HP AK LLN+SFP+Y+ L+Y+F++     
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  RALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSRE------EFVAINLSCQV 120
           R +      GSN P  YEG    DGN+M+IPT++SQG NMS+E      E+ ++ L  + 
Sbjct: 61  RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDLKTIVEWSSVALQNET 120

Query: 121 MVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQE 172
           +V   +   +   +  L RL   C C+++L  ++DDMK FLE+    K D+ T++L+E
Sbjct: 121 IVRQ-EVLHQLCAIPKLSRLDRAC-CLQILFRSLDDMKGFLEIPKNKKIDFGTILLRE 176

BLAST of IVF0017126 vs. NCBI nr
Match: KAA0066059.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99838.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 283 bits (723), Expect = 1.43e-95
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER
Sbjct: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60

Query: 61  ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120
           ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA
Sbjct: 61  ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120

Query: 121 GQRGRGMVSLQRLI 134
           GQRGRGMVSLQRL+
Sbjct: 121 GQRGRGMVSLQRLL 134

BLAST of IVF0017126 vs. NCBI nr
Match: KAA0036771.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95839.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (366), Expect = 1.81e-40
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFR--RACD 60
           M+GP+ +GFGWN+E KC VA+K+ FDNWVK+H AAK LLN+ FP+Y+ LSY+F   RA D
Sbjct: 1   MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATD 60

Query: 61  ERA--LGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVG 120
            +A    D+   GSN P GYE  A     +M    M+SQGLNMS +E +    + +V  G
Sbjct: 61  GQAESFADV---GSNDPAGYEPFAANATPDMDFQPMYSQGLNMSPDELMEAG-NARVSEG 120

Query: 121 --MLQAGQRGRG-------------------MVSLQRLINKCLCMRVLMHNVDDMKAFLE 172
             +    +R RG                    +    L+++C  MR+LM NVDDMKAFLE
Sbjct: 121 RYVSSGSKRKRGGQAEDNASQTRQEVVRQLEAILELTLMDRCRLMRILMRNVDDMKAFLE 180

BLAST of IVF0017126 vs. NCBI nr
Match: TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (371), Expect = 1.90e-40
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M+GP+ +GFGWN+E KC V +K+ FD+WVK+HP AK LLN+SFPHY+ LSY+F +   +R
Sbjct: 83  MRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGK---DR 142

Query: 61  ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVG 120
           A+G         GSN    YE       ++     M+SQGL+MS +E +    +  V   
Sbjct: 143 AMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTAL-VSED 202

Query: 121 MLQAGQ---RGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 172
             Q  Q   R   ++    L+++C  MR+LM NVDDMKAFLEV D +K+ YC+ ILQEN
Sbjct: 203 ASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQEN 257

BLAST of IVF0017126 vs. NCBI nr
Match: KAA0054019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 2.96e-38
Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRR-ACDE 60
           M+GPS + FGWN+E KC + + D  DNWV+ HP AK LLN+SFP+Y+ L+Y+F++     
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  RALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSRE------EFVAINLSCQV 120
           R +      GSN P  YEG    DGN+M+IPT++SQG NMS+E      E+ ++ L  + 
Sbjct: 61  RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDLKTIVEWSSVALQNET 120

Query: 121 MVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 172
           +V      Q    +  L RL   C C+++L  ++DDMK FLE+    K D+ T++L+E 
Sbjct: 121 IVRQEVLHQLC-AIPKLSRLDRAC-CLQILFRSLDDMKGFLEIPKNKKIDFGTILLREE 177

BLAST of IVF0017126 vs. NCBI nr
Match: TYK19659.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 2.70e-37
Identity = 80/184 (43.48%), Postives = 109/184 (59.24%), Query Frame = 0

Query: 1   MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
           M GP  +GFG N+E KC VA+K+ FD+WVK+HPA K LLN+SF HY+ LSY+F +   +R
Sbjct: 224 MPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSYVFGK---DR 283

Query: 61  ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSC----- 120
           A G         GSN   GY+  AT    +   P M+SQGLNM  ++ + I  +      
Sbjct: 284 ATGGRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTARHQDAS 343

Query: 121 ---QVMVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVI 172
              Q +V  L+A       +    L+++C  MR+LM NVDDMKAFL V D +K+ YC++I
Sbjct: 344 QTRQEVVRQLEA-------IPELTLMDRCRLMRILMRNVDDMKAFLNVPDNMKYPYCSII 397

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VL624.6e-7399.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C1J45.1e-3244.38Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T5D21.5e-3144.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D7X41.6e-3044.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DB071.1e-2941.01Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0066059.11.43e-9599.25retrotransposon protein [Cucumis melo var. makuwa] >TYJ99838.1 retrotransposon p... [more]
KAA0036771.11.81e-4044.16retrotransposon protein [Cucumis melo var. makuwa] >TYJ95839.1 retrotransposon p... [more]
TYK05687.11.90e-4044.69retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054019.12.96e-3841.34retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon p... [more]
TYK19659.12.70e-3743.48retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0017126.1IVF0017126.1mRNA