Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGGCCCGTCCAACAATGGTTTTGGCTGGAATAATGAATTGAAGTGCACTGTTGCCAAAAAGGATGAATTCGACAATTGGGTGAAGGTACGCTGTCTTTTCCTTTACTCGTCTATAATAAAAGATAAACTAAACTTCATCCACTTTAACACTTGAACAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGTAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTACTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCTGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGATGGTCAGCCTGCAGAGACTGTTGACATAATTCAAAATGCCATGGAGTACACTAATGATCAGCCCAACCGCATTACAGACGGGTCGATCTTAAGGAATCAAGATGAAGCACGATACGGTAAGAGGTCGTTCGACAATTACAGGCCATCCCTGAACTTATAGAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACAGTGATTCTCCAAGAAAACCCATGA
mRNA sequence
ATGCAAGGCCCGTCCAACAATGGTTTTGGCTGGAATAATGAATTGAAGTGCACTGTTGCCAAAAAGGATGAATTCGACAATTGGGTGAAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGTAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTACTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCTGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGATGGTCAGCCTGCAGAGACTAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACAGTGATTCTCCAAGAAAACCCATGA
Coding sequence (CDS)
ATGCAAGGCCCGTCCAACAATGGTTTTGGCTGGAATAATGAATTGAAGTGCACTGTTGCCAAAAAGGATGAATTCGACAATTGGGTGAAGAATCATCCTGCTGCGAAGGACCTACTAAACAGATCCTTTCCCCATTACAACAACCTTTCCTACATCTTTAGGAGAGCGTGCGACGAAAGGGCGCTCGGAGACATTTGTAGATGTGGGTCGAATGTCCCTTTTGGGTACGAGGGAATTGCTACTGGCGATGGCAATAATATGAAGATCCCTACTATGTTTAGTCAGGGACTAAACATGTCGCGTGAAGAATTTGTGGCAATCAACCTAAGCTGTCAAGTGATGGTAGGAATGCTTCAAGCGGGTCAAAGAGGAAGAGGGATGGTCAGCCTGCAGAGACTAATCAACAAGTGCCTCTGTATGCGTGTTTTGATGCATAATGTCGACGACATGAAAGCATTCCTTGAGGTATCTGATGAGCTGAAGTTCGACTACTGCACAGTGATTCTCCAAGAAAACCCATGA
Protein sequence
MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDERALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQENP
Homology
BLAST of IVF0017126 vs. ExPASy TrEMBL
Match:
A0A5A7VL62 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00460 PE=4 SV=1)
HSP 1 Score: 283.9 bits (725), Expect = 4.6e-73
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER
Sbjct: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
Query: 61 ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120
ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA
Sbjct: 61 ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120
Query: 121 GQRGRGMVSLQRLI 135
GQRGRGMVSLQRL+
Sbjct: 121 GQRGRGMVSLQRLL 134
BLAST of IVF0017126 vs. ExPASy TrEMBL
Match:
A0A5D3C1J4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001630 PE=4 SV=1)
HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
M+GP+ +GFGWN+E KC V +K+ FD+WVK+HP AK LLN+SFPHY+ LSY+F + +R
Sbjct: 83 MRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGK---DR 142
Query: 61 ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAIN--LSCQVM 120
A+G GSN YE ++ M+SQGL+MS +E + L +
Sbjct: 143 AMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTALVSEDA 202
Query: 121 VGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 173
Q R ++ L+++C MR+LM NVDDMKAFLEV D +K+ YC+ ILQEN
Sbjct: 203 SQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQEN 257
BLAST of IVF0017126 vs. ExPASy TrEMBL
Match:
A0A5A7T5D2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001280 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 86/195 (44.10%), Postives = 114/195 (58.46%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIF--RRACD 60
M+GP+ +GFGWN+E KC VA+K+ FDNWVK+H AAK LLN+ FP+Y+ LSY+F RA D
Sbjct: 1 MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATD 60
Query: 61 ERALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVG-- 120
+A GSN P GYE A +M M+SQGLNMS +E + + +V G
Sbjct: 61 GQA-ESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNMSPDELMEAG-NARVSEGRY 120
Query: 121 MLQAGQRGRG-------------------MVSLQRLINKCLCMRVLMHNVDDMKAFLEVS 173
+ +R RG + L+++C MR+LM NVDDMKAFLEV
Sbjct: 121 VSSGSKRKRGGQAEDNASQTRQEVVRQLEAILELTLMDRCRLMRILMRNVDDMKAFLEVP 180
BLAST of IVF0017126 vs. ExPASy TrEMBL
Match:
A0A5D3D7X4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00510 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 79/177 (44.63%), Postives = 106/177 (59.89%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
M GP +GFG N+E KC VA+K+ FD+WVK+HPA K LLN+SF HY+ LSY+F + +R
Sbjct: 224 MPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSYVFGK---DR 283
Query: 61 ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLS-CQVMV 120
A G GSN GY+ AT + P M+SQGLNM ++ + I + Q
Sbjct: 284 ATGGRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTARHQDAS 343
Query: 121 GMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 173
Q R + L+++C MR+LM NVDDMKAFL V D +K+ YC++I QEN
Sbjct: 344 QTRQEVVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLNVPDNMKYPYCSIIFQEN 397
BLAST of IVF0017126 vs. ExPASy TrEMBL
Match:
A0A5D3DB07 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001020 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 73/178 (41.01%), Postives = 110/178 (61.80%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRR-ACDE 60
M+GPS + FGWN+E KC + + D DNWV+ HP AK LLN+SFP+Y+ L+Y+F++
Sbjct: 1 MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60
Query: 61 RALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSRE------EFVAINLSCQV 120
R + GSN P YEG DGN+M+IPT++SQG NMS+E E+ ++ L +
Sbjct: 61 RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDLKTIVEWSSVALQNET 120
Query: 121 MVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQE 172
+V + + + L RL C C+++L ++DDMK FLE+ K D+ T++L+E
Sbjct: 121 IVRQ-EVLHQLCAIPKLSRLDRAC-CLQILFRSLDDMKGFLEIPKNKKIDFGTILLRE 176
BLAST of IVF0017126 vs. NCBI nr
Match:
KAA0066059.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99838.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 283 bits (723), Expect = 1.43e-95
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER
Sbjct: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
Query: 61 ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120
ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA
Sbjct: 61 ALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVGMLQA 120
Query: 121 GQRGRGMVSLQRLI 134
GQRGRGMVSLQRL+
Sbjct: 121 GQRGRGMVSLQRLL 134
BLAST of IVF0017126 vs. NCBI nr
Match:
KAA0036771.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95839.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 145 bits (366), Expect = 1.81e-40
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFR--RACD 60
M+GP+ +GFGWN+E KC VA+K+ FDNWVK+H AAK LLN+ FP+Y+ LSY+F RA D
Sbjct: 1 MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATD 60
Query: 61 ERA--LGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVG 120
+A D+ GSN P GYE A +M M+SQGLNMS +E + + +V G
Sbjct: 61 GQAESFADV---GSNDPAGYEPFAANATPDMDFQPMYSQGLNMSPDELMEAG-NARVSEG 120
Query: 121 --MLQAGQRGRG-------------------MVSLQRLINKCLCMRVLMHNVDDMKAFLE 172
+ +R RG + L+++C MR+LM NVDDMKAFLE
Sbjct: 121 RYVSSGSKRKRGGQAEDNASQTRQEVVRQLEAILELTLMDRCRLMRILMRNVDDMKAFLE 180
BLAST of IVF0017126 vs. NCBI nr
Match:
TYK05687.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 147 bits (371), Expect = 1.90e-40
Identity = 80/179 (44.69%), Postives = 110/179 (61.45%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
M+GP+ +GFGWN+E KC V +K+ FD+WVK+HP AK LLN+SFPHY+ LSY+F + +R
Sbjct: 83 MRGPTCSGFGWNDEQKCIVVEKEVFDDWVKSHPTAKGLLNKSFPHYDELSYMFGK---DR 142
Query: 61 ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSCQVMVG 120
A+G GSN YE ++ M+SQGL+MS +E + + V
Sbjct: 143 AMGGRPKSFTDVGSNDLVRYEAFTADAASDTNFQPMYSQGLSMSLDELMGTRTAL-VSED 202
Query: 121 MLQAGQ---RGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 172
Q Q R ++ L+++C MR+LM NVDDMKAFLEV D +K+ YC+ ILQEN
Sbjct: 203 ASQTRQEVVRQLEVIPELTLMDRCHLMRILMRNVDDMKAFLEVPDNMKYPYCSTILQEN 257
BLAST of IVF0017126 vs. NCBI nr
Match:
KAA0054019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 139 bits (350), Expect = 2.96e-38
Identity = 74/179 (41.34%), Postives = 109/179 (60.89%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRR-ACDE 60
M+GPS + FGWN+E KC + + D DNWV+ HP AK LLN+SFP+Y+ L+Y+F++
Sbjct: 1 MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60
Query: 61 RALGDICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSRE------EFVAINLSCQV 120
R + GSN P YEG DGN+M+IPT++SQG NMS+E E+ ++ L +
Sbjct: 61 RGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYSQGFNMSQEDLKTIVEWSSVALQNET 120
Query: 121 MVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVILQEN 172
+V Q + L RL C C+++L ++DDMK FLE+ K D+ T++L+E
Sbjct: 121 IVRQEVLHQLC-AIPKLSRLDRAC-CLQILFRSLDDMKGFLEIPKNKKIDFGTILLREE 177
BLAST of IVF0017126 vs. NCBI nr
Match:
TYK19659.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 142 bits (359), Expect = 2.70e-37
Identity = 80/184 (43.48%), Postives = 109/184 (59.24%), Query Frame = 0
Query: 1 MQGPSNNGFGWNNELKCTVAKKDEFDNWVKNHPAAKDLLNRSFPHYNNLSYIFRRACDER 60
M GP +GFG N+E KC VA+K+ FD+WVK+HPA K LLN+SF HY+ LSY+F + +R
Sbjct: 224 MPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSYVFGK---DR 283
Query: 61 ALG----DICRCGSNVPFGYEGIATGDGNNMKIPTMFSQGLNMSREEFVAINLSC----- 120
A G GSN GY+ AT + P M+SQGLNM ++ + I +
Sbjct: 284 ATGGRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTARHQDAS 343
Query: 121 ---QVMVGMLQAGQRGRGMVSLQRLINKCLCMRVLMHNVDDMKAFLEVSDELKFDYCTVI 172
Q +V L+A + L+++C MR+LM NVDDMKAFL V D +K+ YC++I
Sbjct: 344 QTRQEVVRQLEA-------IPELTLMDRCRLMRILMRNVDDMKAFLNVPDNMKYPYCSII 397
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VL62 | 4.6e-73 | 99.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C1J4 | 5.1e-32 | 44.38 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7T5D2 | 1.5e-31 | 44.10 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3D7X4 | 1.6e-30 | 44.63 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DB07 | 1.1e-29 | 41.01 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0066059.1 | 1.43e-95 | 99.25 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ99838.1 retrotransposon p... | [more] |
KAA0036771.1 | 1.81e-40 | 44.16 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95839.1 retrotransposon p... | [more] |
TYK05687.1 | 1.90e-40 | 44.69 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0054019.1 | 2.96e-38 | 41.34 | retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon p... | [more] |
TYK19659.1 | 2.70e-37 | 43.48 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |