IVF0017117 (gene) Melon (IVF77) v1

Overview


Name	IVF0017117
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosomal protein L31
Location	chr05: 25542248 .. 25543965 (-)
RNA-Seq Expression	IVF0017117
Synteny	IVF0017117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACACTAGGGGTTATTAATATATGTAAGTTTATTCTCCATTTTTGAAGGCGTTAATTTAATTTCTTCCAATTCCCCGTTTTAGGGCTGTTTTTGTATATGATTTGTATTCTTTGTCATTAAATCCACGCGAGAGTTTCCTGTTTCATCAAGATTAATTGCTTACTTGCTGAGAAAATATGTGGGTACGCGGCCGATTTAGGATTTGGGATAAATTATAGTGAGAAGTATCTTACAGTCTTCTCACAGCTTAATTGTGTTGGTCATTTTCAAATTTCATAATCTTTTTGGGTTACGAATATTGAGGATTTCGCAATGCTCACCAGCCGTTTGATGAAATTCTTCTATGGAGTGGTATGTTTGTATTTGTTTATCCTTCTTCGTTCCTCCTTTGTGTGGCTGTCACTTTCTTAGTTTCTGCTCTTTTGGGGTGACGGACATTGAACATTGCATAGTGCCCACCAAATGTTTGATGATATTCTACAATAAAATGGTATATTTGTGCATGATCATGCTTCTTCATATCCCCTTAATGTGGCTGTCACTTCCTAGTTCCTAATTTCTACTCCTTTAGAGTGATGAACATTGAACACTACGTAGAGGCTAGAGCCCACCAAATGTTTGACGAAATTCTTGTTGGTTGTGTTGTGCATATTCATCGTTCTTTGCTTTCCCACGTATAAACAGAAAAAGTTGTCCATTGAGAATTGGAACTTTTGGTATTAGATTCAAATGTAGCTTAGCTTTACTATGATTATTCCTTTCCTGTCTGTATATCAATTTTGGTTAAATTTCTAAGTTGAGCCTTTGAACTTCCAATTTTATGTCTTCTTAGTTCTGAATTTAGAAAGTGTTGAATAGGTCAAGGACCTATTAGGTACAAAATCAAATCTTAGTTGCTTATTTACACAATGGAAATTGGAAAGATTAAGGACGTACAAAACACTTCTTAAACTACAAGGACCTATTAGATACAAATGGATAGTTCACGGGCCAAATAGATGCAAACTTAAAAGTTTAGGGACTAAATCTGAAGTTTAACCATCAATTTTTTTTGTAGAAGCTTTGATTTGTAAGTACTAGTTATGATTACAGATCTATACAATGAAGAAAGGCTTGCACCCTCAATTGCAGTATGTATCGTATGTCACTCCGAGTGGCAGATTGATGGGTGCTATGATGACCAAAATACACAATGTCAGTAAAGTCTACCACCTCAGAGCAAAGCGTCAAATGATTGAAAGTGTTGGGCAGCTTGCCAAGTTCAAACGTCGTTACGAGATAGGGAATGATGAAGATGCTGCAAATGCTGAAAATGTTGAAAATGCTGAAAAGAAGTGACCTTTAGGGCAGCTCAAGGATCAGCTGTTTGCTTGGATGGCTCATTCTAAATTTGTTTCGAGGGCATGGCCTTGTGAGTGTTAGGAATTTAATGTTCACTTCTTTCAATTAATCAACCCCTTTTCAGAGTCTAGTCTTTTACAGGACAGCGAGTTATTTCCTATTATGGTTTTGATGTGCTTTTACCATTAGAATGATCTAATCTGCATTCCTATTTTCTTTTCATTAAATGTGATCACTTTCCACCCTCTTCTCTTACTGGGAAGCCTAGATTTATGAGACATCTATTTCATAACTATAAGTTGTGTTAAATAAATAACTCAACTCCAATTGCGTTTACTATTGAAGTTTACACATTTATGTAAGAAAACCATCTTCC

mRNA sequence

GACACTAGGGGTTATTAATATATGTAAGTTTATTCTCCATTTTTGAAGGCGTTAATTTAATTTCTTCCAATTCCCCGTTTTAGGGCTGTTTTTGTATATGATTTGTATTCTTTGTCATTAAATCCACGCGAGAGTTTCCTGTTTCATCAAGATTAATTGCTTACTTGCTGAGAAAATATGTGGGTACGCGGCCGATTTAGGATTTGGGATAAATTATAGTGAGAAGTATCTTACAGTCTTCTCACAGCTTAATTGTGTTGGTCATTTTCAAATTTCATAATCTTTTTGGGTTACGAATATTGAGGATTTCGCAATGCTCACCAGCCGTTTGATGAAATTCTTCTATGGAGTGGTATGTTTGTATTTGTTTATCCTTCTTCGTTCCTCCTTTGTGTGGCTGTCACTTTCTTAGTTTCTGCTCTTTTGGGGTGACGGACATTGAACATTGCATAGTGCCCACCAAATGTTTGATGATATTCTACAATAAAATGGTATATTTGTGCATGATCATGCTTCTTCATATCCCCTTAATGTGGCTGTCACTTCCTAGTTCCTAATTTCTACTCCTTTAGAGTGATGAACATTGAACACTACGTAGAGGCTAGAGCCCACCAAATGTTTGACGAAATTCTTGTTGGTTGTGTTGTGCATATTCATCGTTCTTTGCTTTCCCACGTATAAACAGAAAAAGTTGTCCATTGAGAATTGGAACTTTTGGTATTAGATTCAAATGTAGCTTAGCTTTACTATGATTATTCCTTTCCTGTCTGTATATCAATTTTGGTTAAATTTCTAAGTTGAGCCTTTGAACTTCCAATTTTATGTCTTCTTAGTTCTGAATTTAGAAAGTGTTGAATAGGTCAAGGACCTATTAGGTACAAAATCAAATCTTAGTTGCTTATTTACACAATGGAAATTGGAAAGATTAAGGACGTACAAAACACTTCTTAAACTACAAGGACCTATTAGATACAAATGGATAGTTCACGGGCCAAATAGATGCAAACTTAAAAGTTTAGGGACTAAATCTGAAGTTTAACCATCAATTTTTTTTGTAGAAGCTTTGATTTGTAAGTACTAGTTATGATTACAGATCTATACAATGAAGAAAGGCTTGCACCCTCAATTGCAGTATGTATCGTATGTCACTCCGAGTGGCAGATTGATGGGTGCTATGATGACCAAAATACACAATGTCAGTAAAGTCTACCACCTCAGAGCAAAGCGTCAAATGATTGAAAGTGTTGGGCAGCTTGCCAAGTTCAAACGTCGTTACGAGATAGGGAATGATGAAGATGCTGCAAATGCTGAAAATGTTGAAAATGCTGAAAAGAAGTGACCTTTAGGGCAGCTCAAGGATCAGCTGTTTGCTTGGATGGCTCATTCTAAATTTGTTTCGAGGGCATGGCCTTGTGAGTGTTAGGAATTTAATGTTCACTTCTTTCAATTAATCAACCCCTTTTCAGAGTCTAGTCTTTTACAGGACAGCGAGTTATTTCCTATTATGGTTTTGATGTGCTTTTACCATTAGAATGATCTAATCTGCATTCCTATTTTCTTTTCATTAAATGTGATCACTTTCCACCCTCTTCTCTTACTGGGAAGCCTAGATTTATGAGACATCTATTTCATAACTATAAGTTGTGTTAAATAAATAACTCAACTCCAATTGCGTTTACTATTGAAGTTTACACATTTATGTAAGAAAACCATCTTCC

Coding sequence (CDS)

ATGAAGAAAGGCTTGCACCCTCAATTGCAGTATGTATCGTATGTCACTCCGAGTGGCAGATTGATGGGTGCTATGATGACCAAAATACACAATGTCAGTAAAGTCTACCACCTCAGAGCAAAGCGTCAAATGATTGAAAGTGTTGGGCAGCTTGCCAAGTTCAAACGTCGTTACGAGATAGGGAATGATGAAGATGCTGCAAATGCTGAAAATGTTGAAAATGCTGAAAAGAAGTGA

Protein sequence

MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEIGNDEDAANAENVENAEKK

Homology

[Close]

BLAST of IVF0017117 vs. ExPASy TrEMBL
Match: A0A1S4E202 (uncharacterized protein LOC103497231 OS=Cucumis melo OX=3656 GN=LOC103497231 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60

Query: 61 GNDEDAANAENVENAEKK 79
          GNDEDAANAENVENAEKK
Sbjct: 61 GNDEDAANAENVENAEKK 78

[Close]

BLAST of IVF0017117 vs. ExPASy TrEMBL
Match: A0A0A0LI20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006250 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.7e-31
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQLQYVSYVTPSGRLM AMMTK HNVSKVYHLRAKRQMIES+GQLAKF+RRYE+
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60

Query: 61 GNDEDAANAENVENAEKK 79
          GNDE+A NAENVENAEKK
Sbjct: 61 GNDENADNAENVENAEKK 78

[Close]

BLAST of IVF0017117 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.1e-21
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQ+Q++SYVT SGRLM  MMTKIH+V KVYH RAKRQM ESVGQ+AKFKRRYE 
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GNDEDAANAENVENAEK 78
          G       AENVENAEK
Sbjct: 61 G------IAENVENAEK 71

[Close]

BLAST of IVF0017117 vs. ExPASy TrEMBL
Match: A0A5N6RT12 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020296 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.9e-20
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQLQ++SYVT SGRLM   MTKIH+V KVYH RAKRQM ES+GQ+AKFKRR+E 
Sbjct: 1  MKKGLHPQLQWISYVTQSGRLMHVSMTKIHHVGKVYHFRAKRQMAESLGQIAKFKRRFEG 60

Query: 61 GNDED 66
          GNDED
Sbjct: 61 GNDED 65

[Close]

BLAST of IVF0017117 vs. ExPASy TrEMBL
Match: A0A2I4ESM8 (uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 53/69 (76.81%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRY-E 60
          MKKGLHPQLQ++SYVT SGRLM  MMTKIH+V KVYH RAKRQM ES+GQ+AKFKRRY E
Sbjct: 1  MKKGLHPQLQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESIGQVAKFKRRYEE 60

Query: 61 IGNDEDAAN 69
           GN ED  N
Sbjct: 61 KGNAEDNEN 69

[Close]

BLAST of IVF0017117 vs. NCBI nr
Match: XP_008457569.1 (PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902259.1 PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902260.1 PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902262.1 PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo])

HSP 1 Score: 152 bits (384), Expect = 2.46e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60

Query: 61 GNDEDAANAENVENAEKK 78
          GNDEDAANAENVENAEKK
Sbjct: 61 GNDEDAANAENVENAEKK 78

[Close]

BLAST of IVF0017117 vs. NCBI nr
Match: XP_011648680.1 (uncharacterized protein LOC101220819 [Cucumis sativus] >XP_011648681.1 uncharacterized protein LOC101220819 [Cucumis sativus] >KGN60679.1 hypothetical protein Csa_019520 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 6.55e-42
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQLQYVSYVTPSGRLM AMMTK HNVSKVYHLRAKRQMIES+GQLAKF+RRYE+
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60

Query: 61 GNDEDAANAENVENAEKK 78
          GNDE+A NAENVENAEKK
Sbjct: 61 GNDENADNAENVENAEKK 78

[Close]

BLAST of IVF0017117 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 108 bits (270), Expect = 5.00e-29
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQ+Q++SYVT SGRLM  MMTKIH+V KVYH RAKRQM ESVGQ+AKFKRRYE 
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GNDEDAANAENVENAEK 77
          G       AENVENAEK
Sbjct: 61 GI------AENVENAEK 71

[Close]

BLAST of IVF0017117 vs. NCBI nr
Match: KAE8125495.1 (hypothetical protein FH972_020296 [Carpinus fangiana])

HSP 1 Score: 104 bits (260), Expect = 1.47e-27
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQLQ++SYVT SGRLM   MTKIH+V KVYH RAKRQM ES+GQ+AKFKRR+E 
Sbjct: 1  MKKGLHPQLQWISYVTQSGRLMHVSMTKIHHVGKVYHFRAKRQMAESLGQIAKFKRRFEG 60

Query: 61 GNDED 65
          GNDED
Sbjct: 61 GNDED 65

[Close]

BLAST of IVF0017117 vs. NCBI nr
Match: KAF3453405.1 (hypothetical protein FNV43_RR03845 [Rhamnella rubrinervis])

HSP 1 Score: 103 bits (256), Expect = 9.53e-27
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          M+KGLHPQ+Q++SYVT SGRLM  MMTKIHNV KVYHL+AKRQM ES+G +AKF++RYE+
Sbjct: 16 MRKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHLKAKRQMAESIGPIAKFRKRYEV 75

Query: 61 GNDE 64
          GN E
Sbjct: 76 GNTE 79

[Close]

BLAST of IVF0017117 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-20
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQ+Q++SYVT SGRLM  MMT+IH+V KVYH  AKRQM +S+GQ+AKFKRR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFN- 60

Query: 61 GNDEDAANAENVENAEK 78
            + +AA   N EN  K
Sbjct: 61 EQEAEAAEENNNENQNK 76

[Close]

BLAST of IVF0017117 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-20
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60
          MKKGLHPQ+Q++SYVT SGRLM  MMT+IH+V KVYH  AKRQM +S+GQ+AKFKRR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFN- 60

Query: 61 GNDEDAANAENVENAEK 78
            + +AA   N EN  K
Sbjct: 61 EQEAEAAEENNNENQNK 76

The following BLAST results are available for this feature:

BLAST of IVF0017117 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E202	2.5e-34	100.00	uncharacterized protein LOC103497231 OS=Cucumis melo OX=3656 GN=LOC103497231 PE=...	[more]
A0A0A0LI20	5.7e-31	91.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006250 PE=4 SV=1	[more]
A0A6J1CPB3	4.1e-21	75.32	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5N6RT12	5.9e-20	78.46	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020296 PE=4 SV=1	[more]
A0A2I4ESM8	2.9e-19	76.81	uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 P...	[more]

BLAST of IVF0017117 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457569.1	2.46e-46	100.00	PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902259.1 P...	[more]
XP_011648680.1	6.55e-42	91.03	uncharacterized protein LOC101220819 [Cucumis sativus] >XP_011648681.1 uncharact...	[more]
XP_022143125.1	5.00e-29	75.32	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]
KAE8125495.1	1.47e-27	78.46	hypothetical protein FH972_020296 [Carpinus fangiana]	[more]
KAF3453405.1	9.53e-27	73.44	hypothetical protein FNV43_RR03845 [Rhamnella rubrinervis]	[more]

BLAST of IVF0017117 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	2.6e-20	62.34	Ribosomal protein L31	[more]
AT5G55125.2	2.6e-20	62.34	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017117.2	IVF0017117.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome