IVF0016936 (gene) Melon (IVF77) v1

Overview
NameIVF0016936
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Locationchr12: 8947806 .. 8948587 (-)
RNA-Seq ExpressionIVF0016936
SyntenyIVF0016936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACGTTCGATCAGGAAATTGTTGGTACGAGAGTAGAATTGCATAAATTGCCAGCAACTGAGGAAAATCTTGCACTGTTAGCCAAGAGTATCGAGCGGTTGGAAGTACAAGTGGAGATGCAACAACAATTGCTGATGATGTATGTAGAAGGAGTGATGAAAGGACGGCCGATCACGCTTGGAGGATCATCGAACAAAGGAAAATCAATCAAGAGCAATGTTGAAGGAGGAGAAACGTCGATGAATGAAATTAAATCAGGAGGAAGCAACTATTCTAATCAGAGTAGGTTTAAGAAGGTTGAGATGTCAGTTTTTAGCGGCATCGATTGGGACTCTTGGCTACTTAGAGCGGATTGCTATTTCTAGATACATTAGTTAACGGATTCGGAGAAGATGATTGTAGTTGTTACTAGTTTTGATGGAGCAATGCTAGGTTATTATCGATTGCAGGAGGAACAAGAATCTTTCAAAGTTTGGCTGGACTTGTAACAGAGGATGATGATTCGTTTCATATCGGTTAGAGAGGGATCAATCTATGGACGATTCTTAGCGATTATGCAGAAGACGGTCGTGGAGAAATATCATAGTCTATTTGATAAATTGGTTGTGCCATTACCATAACTACCGAAGAAGGTGCTGGAAGAAATGTTTATGAATGGGTGTAGTCCATGGATGTAGGCTAGGGTAGGATGTTGAGAGCTAGTTAGGCTTGCGCATCTGATGAAACTGGCTCAACACGTGGAGAACTTGGAGATAACGAGGAAGGAAGTGGGCCTGGG

mRNA sequence

ATGGAAACGTTCGATCAGGAAATTGTTGGTACGAGAGTAGAATTGCATAAATTGCCAGCAACTGAGGAAAATCTTGCACTGTTAGCCAAGAGTATCGAGCGGTTGGAAGTACAAGTGGAGATGCAACAACAATTGCTGATGATGTATGTAGAAGGAGTGATGAAAGGACGGCCGATCACGCTTGGAGGATCATCGAACAAAGGAAAATCAATCAAGAGCAATGTTGAAGGAGGAGAAACGTCGATGAATGAAATTAAATCAGGAGGAAGCAACTATTCTAATCAGAGTAGGTTTAAGAAGGTTGAGATGTCAGTTTTTAGCGGCATCGATTGGGACTCTTGGCTACTTAGAGCGGATTGCTATTTCTAGATACATTAGTTAACGGATTCGGAGAAGATGATTGTAGTTGTTACTAGTTTTGATGGAGCAATGCTAGGTTATTATCGATTGCAGGAGGAACAAGAATCTTTCAAAGTTTGGCTGGACTTGTAACAGAGGATGATGATTCGTTTCATATCGGTTAGAGAGGGATCAATCTATGGACGATTCTTAGCGATTATGCAGAAGACGGTCGTGGAGAAATATCATAGTCTATTTGATAAATTGGTTGTGCCATTACCATAACTACCGAAGAAGGTGCTGGAAGAAATGTTTATGAATGGGTGTAGTCCATGGATGTAGGCTAGGGTAGGATGTTGAGAGCTAGTTAGGCTTGCGCATCTGATGAAACTGGCTCAACACGTGGAGAACTTGGAGATAACGAGGAAGGAAGTGGGCCTGGG

Coding sequence (CDS)

ATGGAAACGTTCGATCAGGAAATTGTTGGTACGAGAGTAGAATTGCATAAATTGCCAGCAACTGAGGAAAATCTTGCACTGTTAGCCAAGAGTATCGAGCGGTTGGAAGTACAAGTGGAGATGCAACAACAATTGCTGATGATGTATGTAGAAGGAGTGATGAAAGGACGGCCGATCACGCTTGGAGGATCATCGAACAAAGGAAAATCAATCAAGAGCAATGTTGAAGGAGGAGAAACGTCGATGAATGAAATTAAATCAGGAGGAAGCAACTATTCTAATCAGAGTAGGTTTAAGAAGGTTGAGATGTCAGTTTTTAGCGGCATCGATTGGGACTCTTGGCTACTTAGAGCGGATTGCTATTTCTAG

Protein sequence

METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADCYF
Homology
BLAST of IVF0016936 vs. ExPASy TrEMBL
Match: A0A5D3BNP7 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00620 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT 60
           METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT
Sbjct: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT 60

Query: 61  LGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADC 120
           LGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADC
Sbjct: 61  LGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADC 120

Query: 121 YF 123
           YF
Sbjct: 121 YF 122

BLAST of IVF0016936 vs. ExPASy TrEMBL
Match: A0A5A7UUC3 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00180 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.9e-17
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT 60
           ++ FD EI G RVELHKLPA EEN     KSI+RL VQ +  ++LLMMYVEG+ KG  IT
Sbjct: 10  LDAFDPEISGMRVELHKLPAIEENFMTRVKSIKRLGVQAKKHKKLLMMYVEGLSKGHSIT 69

Query: 61  LGG---SSNKGKSIKSNVEGGETSMNEIKSGG 90
           +GG   S +KGKSI+SNVEGGETS N+ KS G
Sbjct: 70  VGGLEESLSKGKSIESNVEGGETSKNKDKSRG 101

BLAST of IVF0016936 vs. ExPASy TrEMBL
Match: A0A5A7UKW4 (Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G00900 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-13
Identity = 52/130 (40.00%), Postives = 82/130 (63.08%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGR 60
           ++  +QEI+  R EL KLPA EEN++L++KSIE    Q+E   MQQQ ++ ++EG+++ +
Sbjct: 370 LDFVEQEILEMRTELKKLPAMEENMSLISKSIENSNAQMEKQQMQQQAILKFIEGIIREK 429

Query: 61  PIT---LGG--SSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWD 120
            +T   L G  S   G    + + GGE  + E K+      ++S+FKKVE+ +F+G+D D
Sbjct: 430 AVTTVELEGTPSGGMGSDATTEMMGGELKV-ERKNEDERAFDRSKFKKVEIPIFNGMDLD 489

Query: 121 SWLLRADCYF 123
            WL +AD YF
Sbjct: 490 FWLFKADRYF 498

BLAST of IVF0016936 vs. ExPASy TrEMBL
Match: A0A5A7SPQ8 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00710 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGR 60
           ++T DQEI G R ELH LP+  E+ + LAKS+ER  VQ E    QQQ  M Y+E ++KG+
Sbjct: 10  LKTVDQEISGIRAELHGLPSIREDFSSLAKSVERQGVQAEQQQQQQQTFMKYIEAMIKGK 69

Query: 61  PITLGGSSNKGKSIKSNVEGGETSMNEIKS--------GGSNYSNQSRFKKVEMSVFSGI 120
             T+         I S V+  E+ M E KS        G  +  ++S+FKK+EM VF G 
Sbjct: 70  -TTITMEEVPESKIHSMVDVNESMMMEGKSEERRSRMEGDDSAGDRSKFKKIEMPVFVGN 129

Query: 121 DWDSWLLRADCYF 123
           D +SWL RA+ YF
Sbjct: 130 DPESWLFRAERYF 141

BLAST of IVF0016936 vs. ExPASy TrEMBL
Match: A0A5A7V723 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00260 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 52/130 (40.00%), Postives = 82/130 (63.08%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQV---EMQQQLLMMYVEGVMKGR 60
           ++  +Q+I   R+EL KLP  EEN++L+ KSIE +  Q+   + QQQ+++ Y+EG+++ +
Sbjct: 9   LDFVEQKIREMRIELKKLPKMEENMSLILKSIENMNAQMKKQQTQQQVILKYIEGIIREK 68

Query: 61  PIT---LGGSSNK--GKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWD 120
            +    L GS +K  G ++ + V  GE S  E +S      ++ +FKKVEM +F+G D D
Sbjct: 69  AVASTDLEGSPSKGIGSNVTAEVLAGE-SRGEGRSVEDKAFDRRKFKKVEMPIFNGTDPD 128

Query: 121 SWLLRADCYF 123
           SWL RAD YF
Sbjct: 129 SWLFRADRYF 137

BLAST of IVF0016936 vs. NCBI nr
Match: KAA0052094.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK00708.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (601), Expect = 4.71e-78
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT 60
           METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT
Sbjct: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT 60

Query: 61  LGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADC 120
           LGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADC
Sbjct: 61  LGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWDSWLLRADC 120

Query: 121 YF 122
           YF
Sbjct: 121 YF 122

BLAST of IVF0016936 vs. NCBI nr
Match: KAA0057101.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK20636.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 9.81e-23
Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGRPIT 60
           ++ FD EI G RVELHKLPA EEN     KSI+RL VQ +  ++LLMMYVEG+ KG  IT
Sbjct: 10  LDAFDPEISGMRVELHKLPAIEENFMTRVKSIKRLGVQAKKHKKLLMMYVEGLSKGHSIT 69

Query: 61  LGG---SSNKGKSIKSNVEGGETSMNEIKSGG 89
           +GG   S +KGKSI+SNVEGGETS N+ KS G
Sbjct: 70  VGGLEESLSKGKSIESNVEGGETSKNKDKSRG 101

BLAST of IVF0016936 vs. NCBI nr
Match: KAA0055708.1 (protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 3.55e-16
Identity = 52/130 (40.00%), Postives = 83/130 (63.85%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVE---MQQQLLMMYVEGVMKGR 60
           ++  +QEI+  R EL KLPA EEN++L++KSIE    Q+E   MQQQ ++ ++EG+++ +
Sbjct: 370 LDFVEQEILEMRTELKKLPAMEENMSLISKSIENSNAQMEKQQMQQQAILKFIEGIIREK 429

Query: 61  PIT---LGGSSNKGKSIKSNVE--GGETSMNEIKSGGSNYSNQSRFKKVEMSVFSGIDWD 120
            +T   L G+ + G    +  E  GGE  + E K+      ++S+FKKVE+ +F+G+D D
Sbjct: 430 AVTTVELEGTPSGGMGSDATTEMMGGELKV-ERKNEDERAFDRSKFKKVEIPIFNGMDLD 489

Query: 121 SWLLRADCYF 122
            WL +AD YF
Sbjct: 490 FWLFKADRYF 498

BLAST of IVF0016936 vs. NCBI nr
Match: KAA0061441.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK21519.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 7.60e-16
Identity = 54/137 (39.42%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQLLMMYVEGVMKGR--- 60
           ME+F+QE+ G + EL K+P  E  L  L+K++E + +Q E QQQ ++ Y+E   KGR   
Sbjct: 10  MESFEQEVAGIKKELMKMPMIESTLIELSKNMETMRLQSEKQQQAILSYMEANAKGRSTA 69

Query: 61  ------------PITLGGSSNKGKSIKSNVEGGETSMNEIKSGGSNYSNQSRFKKVEMSV 120
                       P T    S  GK+  S  + GETS         N S+QS+FK+VE  V
Sbjct: 70  RERMNESDIQNSPAT---KSKDGKASSSR-DIGETSTERKTDSDENTSDQSKFKQVERPV 129

Query: 121 FSGIDWDSWLLRADCYF 122
           F+G D +SWL RA+ YF
Sbjct: 130 FTGEDPESWLFRAERYF 142

BLAST of IVF0016936 vs. NCBI nr
Match: KAA0031986.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.96e-16
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 0

Query: 1   METFDQEIVGTRVELHKLPATEENLALLAKSIERLEVQVEMQQQ---LLMMYVEGVMKGR 60
           ++T DQEI G R ELH LP+  E+ + LAKS+ER  VQ E QQQ     M Y+E ++KG+
Sbjct: 10  LKTVDQEISGIRAELHGLPSIREDFSSLAKSVERQGVQAEQQQQQQQTFMKYIEAMIKGK 69

Query: 61  PITLGGSSNKGKSIKSNVEGGETSMNEIKS--------GGSNYSNQSRFKKVEMSVFSGI 120
             T+         I S V+  E+ M E KS        G  +  ++S+FKK+EM VF G 
Sbjct: 70  T-TITMEEVPESKIHSMVDVNESMMMEGKSEERRSRMEGDDSAGDRSKFKKIEMPVFVGN 129

Query: 121 DWDSWLLRADCYF 122
           D +SWL RA+ YF
Sbjct: 130 DPESWLFRAERYF 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BNP71.0e-58100.00Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UUC31.9e-1761.96Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UKW42.9e-1340.00Protochlorophyllide-dependent translocon component 52 OS=Cucumis melo var. makuw... [more]
A0A5A7SPQ88.3e-1342.86Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V7231.9e-1240.00Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
KAA0052094.14.71e-78100.00transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK00708.1 t... [more]
KAA0057101.19.81e-2361.96transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK20636.1 t... [more]
KAA0055708.13.55e-1640.00protochlorophyllide-dependent translocon component 52 [Cucumis melo var. makuwa][more]
KAA0061441.17.60e-1639.42transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK21519.1 t... [more]
KAA0031986.18.96e-1642.86Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK16806.1 Tran... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016936.1IVF0016936.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding