IVF0016642 (gene) Melon (IVF77) v1

Overview


Name	IVF0016642
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	chaperone protein dnaJ C76, chloroplastic-like
Location	chr09: 3851704 .. 3852697 (+)
RNA-Seq Expression	IVF0016642
Synteny	IVF0016642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCAAGGCCTTCACCAAGCAGCTGAAACGGCAAGAACAGGACAAAAAATATGGTGAGTTTTCCTTTGGGTTCATTGTGTTTTCAACCAAGTATTTGATATAATTAAAGGGTAGATTCAAATTTATTATTGGTAGTTTATAGAAATGAATTTAGAATTTAGTAACTATGTTTAATAAACCTCTAAAAATAGTTCATATGGTCTGATAATTGTCTCATAAATAGCTCTACTCAGCAGGAGAGTTTTATTAAATTATAAAGATTAAATTCGAATTATAAATTATAAGAACCAAATTTATATTTTAACCGATAATTAGGACTCAGCTCGAAAACTATTTTGTTTCTTGTCTTTGTTTTTTAAAGTCCAAATTTCTAAACATTATTTTCACCTTCAATTTCTTTCTTTGATATATACTTTTCATTAATGGTTAAAAAATCTAAACCCAAATTTTGAAAAACTAAAAAAAAAAAAAGTAGCAATACAAAACTTGTTTTTGTCTTTAAACTTTGCTAAGAATTTAACCATAATACTCTCAGAAAATATGTAAATCAAAATAAGAAATGAAAAGAAACAAAGCTTAAATTTTAAAAACAAAAACAAAATAGTTACAAAAACAATGACTAAGCTTTGCACGGTTCTAATTGATATCAAAATGTCATTTCTTCAACTAAAATTAATCTCTAATTGTTGTGTCAAATTAAGTTAATAGTTATAATACCCTATCATTGATTGTTGTTTAATTATACATACATACAGGAGCGGAAACTGTGGAAGAAACTCCAGCTCAAGCTGAGGCTCGAGCTAATGCCACCATGAAAATACAAAGGGAGAAGTTTTATGGAGTTTGGAATTGGGTAAAGCAAGTTTTTAGTGATAGGTAGGTTCATGAAAAAGCTCTGATATTCTATCACTAATCTCAAACTGTTCTCAAAATCATTTTTGGTTACTAATATTATTGTGCATATTGTTGTCGACTGTAGTCATGTGTGA

mRNA sequence

ATGGCGGCCAAGGCCTTCACCAAGCAGCTGAAACGGCAAGAACAGGACAAAAAATATGGAGCGGAAACTGTGGAAGAAACTCCAGCTCAAGCTGAGGCTCGAGCTAATGCCACCATGAAAATACAAAGGGAGAAGTTTTATGGAGTTTGGAATTGGGTAAAGCAAGTTTTTAGTGATAGTCATGTGTGA

Coding sequence (CDS)

ATGGCGGCCAAGGCCTTCACCAAGCAGCTGAAACGGCAAGAACAGGACAAAAAATATGGAGCGGAAACTGTGGAAGAAACTCCAGCTCAAGCTGAGGCTCGAGCTAATGCCACCATGAAAATACAAAGGGAGAAGTTTTATGGAGTTTGGAATTGGGTAAAGCAAGTTTTTAGTGATAGTCATGTGTGA

Protein sequence

MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDSHV

Homology

[Close]

BLAST of IVF0016642 vs. ExPASy TrEMBL
Match: A0A5A7T7Y1 (Chaperone protein DnaJ-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00530 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS 60
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS
Sbjct: 284 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS 343

Query: 61  HV 63
           HV
Sbjct: 344 HV 345

[Close]

BLAST of IVF0016642 vs. ExPASy TrEMBL
Match: A0A1S3C8N6 (uncharacterized protein LOC103498094 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498094 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 60
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD
Sbjct: 284 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 342

[Close]

BLAST of IVF0016642 vs. ExPASy TrEMBL
Match: A0A1S3C990 (uncharacterized protein LOC103498094 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498094 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 60
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD
Sbjct: 279 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 337

[Close]

BLAST of IVF0016642 vs. ExPASy TrEMBL
Match: A0A1S3C878 (chaperone protein DnaJ-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498094 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 60
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD
Sbjct: 186 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 244

[Close]

BLAST of IVF0016642 vs. ExPASy TrEMBL
Match: A0A0A0KUF2 (J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G523160 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-21
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 60
           MAAKAFTKQL+RQEQD KYGAETV ETPAQAEARANATMKIQREKF+GVWNWVKQVFSD
Sbjct: 242 MAAKAFTKQLERQEQDTKYGAETVGETPAQAEARANATMKIQREKFHGVWNWVKQVFSD 300

[Close]

BLAST of IVF0016642 vs. NCBI nr
Match: KAA0037555.1 (chaperone protein DnaJ-like isoform X3 [Cucumis melo var. makuwa] >TYK03117.1 chaperone protein DnaJ-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 1.15e-32
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS 60
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS
Sbjct: 284 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS 343

Query: 61  HV 62
           HV
Sbjct: 344 HV 345

[Close]

BLAST of IVF0016642 vs. NCBI nr
Match: XP_008458794.1 (PREDICTED: chaperone protein DnaJ-like isoform X3 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 5.89e-31
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 59
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD
Sbjct: 186 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 244

[Close]

BLAST of IVF0016642 vs. NCBI nr
Match: XP_008458792.1 (PREDICTED: uncharacterized protein LOC103498094 isoform X2 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 3.84e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 59
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD
Sbjct: 279 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 337

[Close]

BLAST of IVF0016642 vs. NCBI nr
Match: XP_008458791.1 (PREDICTED: uncharacterized protein LOC103498094 isoform X1 [Cucumis melo])

HSP 1 Score: 118 bits (295), Expect = 4.18e-30
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 59
           MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD
Sbjct: 284 MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSD 342

[Close]

BLAST of IVF0016642 vs. NCBI nr
Match: XP_004142792.2 (chaperone protein dnaJ C76, chloroplastic [Cucumis sativus] >KAE8648557.1 hypothetical protein Csa_009381 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 6.05e-28
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   MAAKAFTKQLKRQEQDKKYGAETVEETPAQAEARANATMKIQREKFYGVWNWVKQVFSDS 60
           MAAKAFTKQL+RQEQD KYGAETV ETPAQAEARANATMKIQREKF+GVWNWVKQVFSDS
Sbjct: 242 MAAKAFTKQLERQEQDTKYGAETVGETPAQAEARANATMKIQREKFHGVWNWVKQVFSDS 301

The following BLAST results are available for this feature:

BLAST of IVF0016642 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T7Y1	1.3e-25	100.00	Chaperone protein DnaJ-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C8N6	1.2e-23	100.00	uncharacterized protein LOC103498094 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C990	1.2e-23	100.00	uncharacterized protein LOC103498094 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C878	1.2e-23	100.00	chaperone protein DnaJ-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498094 P...	[more]
A0A0A0KUF2	4.2e-21	93.22	J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G523160 PE=4 SV=1	[more]

BLAST of IVF0016642 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037555.1	1.15e-32	100.00	chaperone protein DnaJ-like isoform X3 [Cucumis melo var. makuwa] >TYK03117.1 ch...	[more]
XP_008458794.1	5.89e-31	100.00	PREDICTED: chaperone protein DnaJ-like isoform X3 [Cucumis melo]	[more]
XP_008458792.1	3.84e-30	100.00	PREDICTED: uncharacterized protein LOC103498094 isoform X2 [Cucumis melo]	[more]
XP_008458791.1	4.18e-30	100.00	PREDICTED: uncharacterized protein LOC103498094 isoform X1 [Cucumis melo]	[more]
XP_004142792.2	6.05e-28	93.33	chaperone protein dnaJ C76, chloroplastic [Cucumis sativus] >KAE8648557.1 hypoth...	[more]

BLAST of IVF0016642 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR45295:SF4	3FE-4S FERREDOXIN	coord: 1..59
None	No IPR available	PANTHER	PTHR45295	CHAPERONE PROTEIN DNAJ C76, CHLOROPLASTIC	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016642.1	IVF0016642.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding