IVF0016506 (gene) Melon (IVF77) v1

Overview


Name	IVF0016506
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	3-oxoacyl-(Acyl-carrier-protein) reductase FabG-like isoform X2
Location	chr05: 19619483 .. 19619899 (+)
RNA-Seq Expression	IVF0016506
Synteny	IVF0016506

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGACGCAAAAGGGGAGTGGCTCGGGTCGTGAGGAAGAAGCGCGGGTCGAGTCAGCTTCGGGCGTTAGCAGACTTGCGAACGCGCGGGTCGTGTCTTCGGGCTCGGGCAACGGCATGCAGGCGGAACGCGATGCTCGACGAGTGTTTCGTTTGGGAGCGGGGCGGAGGCGCAATCGGGTCGCGTGACGAGGCACGACGCACGGACGGCTTACGAACTCGGGCGGCTGGTGGCGCGGGTGGGTGTCGGTCGGTTCGACTATTCTGTGACAATGTCGACAGTGGCGGCTGGCGGAGAAAGGAGAGGCGGCGACGGCTTGGGGCTAGGGTTTTTGGGATTAGGGTTTACTTGGGGAAGATGAATAGTTTCCCACGTTTTCCAATGCCCCTTTTTAATAAAAAAATAATAATATAA

mRNA sequence

ATGGCTCGACGCAAAAGGGGAGTGGCTCGGGTCGTGAGGAAGAAGCGCGGGTCGAGTCAGCTTCGGGCGTTAGCAGACTTGCGAACGCGCGGGTCGTGTCTTCGGGCTCGGGCAACGGCATGCAGGCGGAACGCGATGCTCGACGAGTGTTTCGTTTGGGAGCGGGGCGGAGGCGCAATCGGGTCGCGTGACGAGGCACGACGCACGGACGGCTTACGAACTCGGGCGGCTGGTGGCGCGGGTGGGTGTCGGTCGGTTCGACTATTCTGTGACAATGTCGACAGTGGCGGCTGGCGGAGAAAGGAGAGGCGGCGACGGCTTGGGGCTAGGGTTTTTGGGATTAGGGTTTACTTGGGGAAGATGAATAGTTTCCCACGTTTTCCAATGCCCCTTTTTAATAAAAAAATAATAATATAA

Coding sequence (CDS)

ATGGCTCGACGCAAAAGGGGAGTGGCTCGGGTCGTGAGGAAGAAGCGCGGGTCGAGTCAGCTTCGGGCGTTAGCAGACTTGCGAACGCGCGGGTCGTGTCTTCGGGCTCGGGCAACGGCATGCAGGCGGAACGCGATGCTCGACGAGTGTTTCGTTTGGGAGCGGGGCGGAGGCGCAATCGGGTCGCGTGACGAGGCACGACGCACGGACGGCTTACGAACTCGGGCGGCTGGTGGCGCGGGTGGGTGTCGGTCGGTTCGACTATTCTGTGACAATGTCGACAGTGGCGGCTGGCGGAGAAAGGAGAGGCGGCGACGGCTTGGGGCTAGGGTTTTTGGGATTAGGGTTTACTTGGGGAAGATGAATAGTTTCCCACGTTTTCCAATGCCCCTTTTTAATAAAAAAATAATAATATAA

Protein sequence

MARRKRGVARVVRKKRGSSQLRALADLRTRGSCLRARATACRRNAMLDECFVWERGGGAIGSRDEARRTDGLRTRAAGGAGGCRSVRLFCDNVDSGGWRRKERRRRLGARVFGIRVYLGKMNSFPRFPMPLFNKKIII

Homology

[Close]

BLAST of IVF0016506 vs. ExPASy TrEMBL
Match: A0A5A7SNS1 (3-oxoacyl-(Acyl-carrier-protein) reductase FabG-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001790 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 69/119 (57.98%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MARRKRGVARVVRKKRGSSQLRALADLRTRGSCLRARATACRRNAMLDE----------- 60
           +AR ++G A+VVR+KRGS +LRA+AD RT GS LR RATACRRNA LD+           
Sbjct: 55  VARCEKGAAQVVREKRGSGRLRAIADFRTCGSRLRVRATACRRNAALDDGLQAEETRSGR 114

Query: 61  CFVWERGGGAIGSRDEARRTD-GLRTRAA----------GGAGGCRSVRLFCDNVDSGG 98
           C +WERGG AIGSRDEARRT  GL   AA          GG+ GCRS RLFCD+VD GG
Sbjct: 115 CSIWERGGDAIGSRDEARRTAFGLGRLAARVRRLEDAKSGGSDGCRSARLFCDDVDGGG 173

[Close]

BLAST of IVF0016506 vs. ExPASy TrEMBL
Match: A0A5D3DVU8 (3-oxoacyl-(Acyl-carrier-protein) reductase FabG-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00520 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-21
Identity = 66/115 (57.39%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 5   KRGVARVVRKKRGSSQLRALADLRTRGSCLRARATACRRNAMLDE-----------CFVW 64
           ++G A+VVR+KRGS +LRA+AD RT GS LR RATACRRNA L++           C +W
Sbjct: 22  RKGAAQVVREKRGSGRLRAIADFRTCGSRLRVRATACRRNAALEDGLQAEETRSGRCSIW 81

Query: 65  ERGGGAIGSRDEARRT-DGLRTRAA----------GGAGGCRSVRLFCDNVDSGG 98
           ERGG AIGSRDEARRT  GL   AA          GG+ GCRS RLFCD+VD GG
Sbjct: 82  ERGGDAIGSRDEARRTASGLGRLAARVRRLEDAKSGGSDGCRSARLFCDDVDGGG 136

[Close]

BLAST of IVF0016506 vs. ExPASy TrEMBL
Match: A0A5D3B9B4 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00170 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 44/96 (45.83%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 5   KRGVARVVRKKRGSSQLRALADLRTRGSCLRARATAC----------------------- 64
           ++   +V+R+KRGS QLRA+A+LRTRGS LRARAT C                       
Sbjct: 192 RKWATQVMREKRGSGQLRAIANLRTRGSHLRARATVCRGNAALGDSLQAERDARRRLTGG 251

Query: 65  --------RRNAMLDECFVWERGGGAIGSRDEARRT 70
                   RRN +L  CFVWERG  AIGSRD A+RT
Sbjct: 252 TRCSTTAYRRNVVLGGCFVWERGRDAIGSRDGAQRT 287

[Close]

BLAST of IVF0016506 vs. ExPASy TrEMBL
Match: A0A5A7UDL2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00050 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 51/110 (46.36%), Postives = 59/110 (53.64%), Query Frame = 0


Query: 4   RKRGVARVVRKKR-----GSSQLRALADLRT----------RGSCLRARATACRRNAMLD 63
           R+R      R++R     GS +LRA+ADLRT          R    R  ATACRRNA L 
Sbjct: 411 RRRVAHECWRRRRRLTGSGSGRLRAIADLRTCGRVFGLGKRRAGGARRLATACRRNATLA 470

Query: 64  ECFVWERGGGAIGSRDEAR-RTDGLRTRAA-------GGAGGCRSVRLFC 91
           + FVWER GG IGSRDEAR  T GL   AA       G AGG R + + C
Sbjct: 471 KFFVWERCGGVIGSRDEARCTTFGLGRLAARVRVSRLGSAGGARCLAMAC 520

[Close]

BLAST of IVF0016506 vs. NCBI nr
Match: KAA0025891.1 (3-oxoacyl-(acyl-carrier-protein) reductase FabG-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.52e-26
Identity = 69/119 (57.98%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 1   MARRKRGVARVVRKKRGSSQLRALADLRTRGSCLRARATACRRNAMLDE----------- 60
           +AR ++G A+VVR+KRGS +LRA+AD RT GS LR RATACRRNA LD+           
Sbjct: 55  VARCEKGAAQVVREKRGSGRLRAIADFRTCGSRLRVRATACRRNAALDDGLQAEETRSGR 114

Query: 61  CFVWERGGGAIGSRDEARRTD-GLRTRAA----------GGAGGCRSVRLFCDNVDSGG 97
           C +WERGG AIGSRDEARRT  GL   AA          GG+ GCRS RLFCD+VD GG
Sbjct: 115 CSIWERGGDAIGSRDEARRTAFGLGRLAARVRRLEDAKSGGSDGCRSARLFCDDVDGGG 173

[Close]

BLAST of IVF0016506 vs. NCBI nr
Match: TYK27821.1 (3-oxoacyl-(acyl-carrier-protein) reductase FabG-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 3.09e-26
Identity = 66/115 (57.39%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 5   KRGVARVVRKKRGSSQLRALADLRTRGSCLRARATACRRNAMLDE-----------CFVW 64
           ++G A+VVR+KRGS +LRA+AD RT GS LR RATACRRNA L++           C +W
Sbjct: 22  RKGAAQVVREKRGSGRLRAIADFRTCGSRLRVRATACRRNAALEDGLQAEETRSGRCSIW 81

Query: 65  ERGGGAIGSRDEARRT-DGLRTRAA----------GGAGGCRSVRLFCDNVDSGG 97
           ERGG AIGSRDEARRT  GL   AA          GG+ GCRS RLFCD+VD GG
Sbjct: 82  ERGGDAIGSRDEARRTASGLGRLAARVRRLEDAKSGGSDGCRSARLFCDDVDGGG 136

[Close]

BLAST of IVF0016506 vs. NCBI nr
Match: TYJ95717.1 (uncharacterized protein E5676_scaffold282G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.38e-10
Identity = 44/90 (48.89%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 11  VVRKKRGSSQLRALADLRTRGSCLRARATACR---------------------------- 69
           V+R+KRGS QLRA+A+LRTRGS LRARAT CR                            
Sbjct: 198 VMREKRGSGQLRAIANLRTRGSHLRARATVCRGNAALGDSLQAERDARRRLTGGTRCSTT 257

[Close]

BLAST of IVF0016506 vs. NCBI nr
Match: KAA0054083.1 (uncharacterized protein E6C27_scaffold1371G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 8.74e-10
Identity = 47/92 (51.09%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 17  GSSQLRALADLRTRGSCL----------RARATACRRNAMLDECFVWERGGGAIGSRDEA 76
           GS +LRA+ADLRT G             R  ATACRRNA L + FVWER GG IGSRDEA
Sbjct: 429 GSGRLRAIADLRTCGRVFGLGKRRAGGARRLATACRRNATLAKFFVWERCGGVIGSRDEA 488

Query: 77  RRTD-GLRTRAA-------GGAGGCRSVRLFC 90
           R T  GL   AA       G AGG R + + C
Sbjct: 489 RCTTFGLGRLAARVRVSRLGSAGGARCLAMAC 520

The following BLAST results are available for this feature:

BLAST of IVF0016506 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016506 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNS1	1.5e-21	57.98	3-oxoacyl-(Acyl-carrier-protein) reductase FabG-like isoform X2 OS=Cucumis melo ...	[more]
A0A5D3DVU8	4.2e-21	57.39	3-oxoacyl-(Acyl-carrier-protein) reductase FabG-like isoform X2 OS=Cucumis melo ...	[more]
A0A5D3B9B4	1.4e-08	45.83	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7UDL2	1.0e-06	46.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0016506 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025891.1	1.52e-26	57.98	3-oxoacyl-(acyl-carrier-protein) reductase FabG-like isoform X2 [Cucumis melo va...	[more]
TYK27821.1	3.09e-26	57.39	3-oxoacyl-(acyl-carrier-protein) reductase FabG-like isoform X2 [Cucumis melo va...	[more]
TYJ95717.1	1.38e-10	48.89	uncharacterized protein E5676_scaffold282G00170 [Cucumis melo var. makuwa]	[more]
KAA0054083.1	8.74e-10	51.09	uncharacterized protein E6C27_scaffold1371G00050 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0016506 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016506.1	IVF0016506.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity