IVF0016358 (gene) Melon (IVF77) v1

Overview
NameIVF0016358
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionZinc finger and BTB domain-containing protein 47
Locationchr03: 25644527 .. 25645651 (+)
RNA-Seq ExpressionIVF0016358
SyntenyIVF0016358
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTAAGGATGAGAAGACATACTTGGTTTAAAAAACCATAATGATTCATCCACAAAATAAAGTATCATTAGCCTAAATTGAGTGCATGAAAAACCCTTTTGTTCCAAAAAAGTTTATTTCCCCAAGATGTAATGAATGAATGAATGAATGAATGAATCAAAATCCCCTCCAAGTCCATCAAAACTCCAATTTCAACTCGCTGTCTGTTCTGTTTTGTAGGGCTCTTCTCACAATCGCCCCCTTTTTAGTAGAGCCATAATAGAAATCTGCAGCAGTGGATTGGCTACAAGGATTTGACGTTTTTGTTTTCTTCTTCTTCTTCTTCTTCTACTACTTTTCTCCTAATTTTCCCCCTTCTTCCCCTTTCCTCCAAACTCCGCCGATGGATTTCGCTTCGATTTTCTATTGAACAAACCTTCCGATTCTGTGGGTTTTCATTTGGGTCTCTTAATTTCACTCCCGTTTCCTCGTTTGTTTGATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCGGCCAATCCATACAGCCCAGAAAAAGAGGCCGGCCGCGTAAGGTTCTTGATGAACAACAAAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCGCCGCTGCTGCCGGAAGTTGAAGAGAATCCACCTGAGAAAAAAATTAAAGCGACTGTGGATGAACCGCCGCCGGGTTCCGTGAAAGAAGGTTCGAAACAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAATGGGTAAACATAAAACGAAAATCAAAAATCAAAAAACAATTTTATGGGTTCTTCTTCTTTCTTTTTTTTTTGGGAATTTAGGAATCTGAAAAACCTGAAGAAAAATCTTTGGGTTTCGTTTCTTTGATTTTTGTGGGTAAATTGTATTGTTGTTGTATTTGATTGGATTAGGTTGAAAGAATTCGAAATTTGGATTGGAAAATTCACTTTCAAGTTCATCTTTACTTGTTTTTCCTTTCATCCAAATCTTTGTATTTACTTTCTCTTCAAGATTTCATGTTCTTTTTCACAATG

mRNA sequence

GGTAAGGATGAGAAGACATACTTGGTTTAAAAAACCATAATGATTCATCCACAAAATAAAGTATCATTAGCCTAAATTGAGTGCATGAAAAACCCTTTTGTTCCAAAAAAGTTTATTTCCCCAAGATGTAATGAATGAATGAATGAATGAATGAATCAAAATCCCCTCCAAGTCCATCAAAACTCCAATTTCAACTCGCTGTCTGTTCTGTTTTGTAGGGCTCTTCTCACAATCGCCCCCTTTTTAGTAGAGCCATAATAGAAATCTGCAGCAGTGGATTGGCTACAAGGATTTGACGTTTTTGTTTTCTTCTTCTTCTTCTTCTTCTACTACTTTTCTCCTAATTTTCCCCCTTCTTCCCCTTTCCTCCAAACTCCGCCGATGGATTTCGCTTCGATTTTCTATTGAACAAACCTTCCGATTCTGTGGGTTTTCATTTGGGTCTCTTAATTTCACTCCCGTTTCCTCGTTTGTTTGATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCGGCCAATCCATACAGCCCAGAAAAAGAGGCCGGCCGCGTAAGGTTCTTGATGAACAACAAAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCGCCGCTGCTGCCGGAAGTTGAAGAGAATCCACCTGAGAAAAAAATTAAAGCGACTGTGGATGAACCGCCGCCGGGTTCCGTGAAAGAAGGTTCGAAACAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAATGGGTAAACATAAAACGAAAATCAAAAATCAAAAAACAATTTTATGGGTTCTTCTTCTTTCTTTTTTTTTTGGGAATTTAGGAATCTGAAAAACCTGAAGAAAAATCTTTGGGTTTCGTTTCTTTGATTTTTGTGGGTAAATTGTATTGTTGTTGTATTTGATTGGATTAGGTTGAAAGAATTCGAAATTTGGATTGGAAAATTCACTTTCAAGTTCATCTTTACTTGTTTTTCCTTTCATCCAAATCTTTGTATTTACTTTCTCTTCAAGATTTCATGTTCTTTTTCACAATG

Coding sequence (CDS)

ATGGGTAAGAAAAAAACCCAGAAAACTAAGGAGATTGCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTAGCCGATGATGGTATCGGCCAATCCATACAGCCCAGAAAAAGAGGCCGGCCGCGTAAGGTTCTTGATGAACAACAAAACGAACAGGAGAACAAGAAACTGCCGCCGCCGCCGCCGCTGCTGCCGGAAGTTGAAGAGAATCCACCTGAGAAAAAAATTAAAGCGACTGTGGATGAACCGCCGCCGGGTTCCGTGAAAGAAGGTTCGAAACAAGAAGAACCCAAAACAGGGGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGTAGCTAA

Protein sequence

MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS
Homology
BLAST of IVF0016358 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.1e-51
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 118
           PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

BLAST of IVF0016358 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.2e-38
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDG-IGQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDG IGQ IQPRKRGRPRKVL+EQQNEQE+KK  P
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK--P 60

Query: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 118
           PPPLL EV ENPPEKKIK TVDE   GS+ EGSK+EEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPPLL-EVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

BLAST of IVF0016358 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 84/124 (67.74%), Postives = 94/124 (75.81%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADD----GIGQSIQPRKRGRPRKVLDEQQNEQENKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DD    G GQS QPRKRGRPRKVLDE     ++KK
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDE---PPDDKK 92

Query: 61  LPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQ---EEPKTGDGSRSRGRRKNKP 118
           L PPP    +V + P +KK K T DEPP  S++  SKQ   EEPK+GDGSRSRGRRKNKP
Sbjct: 93  LLPPP--AADVADKPLQKKGKTTGDEPPI-SMEGASKQQESEEPKSGDGSRSRGRRKNKP 150

BLAST of IVF0016358 vs. ExPASy TrEMBL
Match: A0A251R9L0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.5e-07
Identity = 61/139 (43.88%), Postives = 76/139 (54.68%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQS----IQPRKRGRPRKVLD--EQQNEQEN 60
           MGKKK QKTKE++VAIAE  ++   D+G  QS      PRKRGRPRK+++  E   EQ  
Sbjct: 1   MGKKKPQKTKELSVAIAEAPST--GDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQST 60

Query: 61  KKLPPPPPLLPEVEENPPEKKIKATVD----------------EPPPGSVKEGSKQEEPK 118
            +         +VEE    KK KAT D                EP   SV+ G+K+EE +
Sbjct: 61  PQTEEAAAAAEDVEEQ--SKKAKATEDEDQQEEEQQEQPKIKEEPSSASVRGGAKKEEGQ 120

BLAST of IVF0016358 vs. ExPASy TrEMBL
Match: A0A314ZHL5 (Neuromodulin OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07055 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.6e-07
Identity = 61/140 (43.57%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQS----IQPRKRGRPRKVLD--EQQNEQEN 60
           MGKKK QKTKE++VAIAE  ++   D+G  QS      PRKRGRPRK+++  E   EQ  
Sbjct: 1   MGKKKPQKTKELSVAIAEAPST--GDEGQQQSQPQPHTPRKRGRPRKIIEKTESTEEQST 60

Query: 61  KKLPPPPPLLPEVEENPPEKKIKATVD-----------------EPPPGSVKEGSKQEEP 118
            +         +VEE    KK KAT D                 EP   SV+ G+K+EE 
Sbjct: 61  PQTEEAAAAAEDVEEQ--SKKAKATEDEDQQQEEQQEQPKIKEEEPSSASVRGGAKKEEG 120

BLAST of IVF0016358 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (538), Expect = 1.33e-68
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117
           PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117

BLAST of IVF0016358 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 176 bits (445), Expect = 1.82e-54
Identity = 102/117 (87.18%), Postives = 106/117 (90.60%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60
           MGKKK QKTKEIAVAIAETS SKLADDGIGQSIQPRKRGRPRKVLDE QN+QENKKL PP
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGIGQSIQPRKRGRPRKVLDEPQNKQENKKLLPP 60

Query: 61  PPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117
              LPEV ENPPEKK K TVD+PPPGS++EGSKQ EPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  ---LPEVAENPPEKKAKTTVDQPPPGSMEEGSKQGEPKTGDGSRSRGRRKNKPRKSS 114

BLAST of IVF0016358 vs. NCBI nr
Match: KGN62596.1 (hypothetical protein Csa_022088 [Cucumis sativus])

HSP 1 Score: 167 bits (422), Expect = 6.02e-51
Identity = 103/118 (87.29%), Postives = 107/118 (90.68%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI-GQSIQPRKRGRPRKVLDEQQNEQENKKLPP 60
           MGKKKTQKTKEIAVAIAETSTSKLADDGI GQ IQPRKRGRPRKVL+EQQNEQE+KK  P
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKK--P 60

Query: 61  PPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQEEPKTGDGSRSRGRRKNKPRKSS 117
           PPPLL EV ENPPEKKIK TVDE   GS+ EGSK+EEPKTGDGSRSRGRRKNKPRKSS
Sbjct: 61  PPPLL-EVAENPPEKKIKGTVDEAALGSMIEGSKEEEPKTGDGSRSRGRRKNKPRKSS 115

BLAST of IVF0016358 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (306), Expect = 2.91e-33
Identity = 85/124 (68.55%), Postives = 97/124 (78.23%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGI----GQSIQPRKRGRPRKVLDEQQNEQENKK 60
           MGKKKTQKTK+I+VAIAETSTSKL DDG     GQS+QPRKRGRPRKVLDE  ++   KK
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDD---KK 60

Query: 61  LPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQ---EEPKTGDGSRSRGRRKNKP 117
           LPPPP    +V + P +KK K+T DEPP  S++  SKQ   EEPK+GDGSRSRGRRKNKP
Sbjct: 61  LPPPPA---DVADKPLQKKGKSTGDEPP-DSMEGASKQHESEEPKSGDGSRSRGRRKNKP 117

BLAST of IVF0016358 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118 bits (296), Expect = 9.91e-32
Identity = 84/124 (67.74%), Postives = 96/124 (77.42%), Query Frame = 0

Query: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIG----QSIQPRKRGRPRKVLDEQQNEQENKK 60
           MGKKKTQKTK+I+VAIAE STSKL DDG G    QS+QPRKRGRPRKVLDE  ++   KK
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDD---KK 60

Query: 61  LPPPPPLLPEVEENPPEKKIKATVDEPPPGSVKEGSKQ---EEPKTGDGSRSRGRRKNKP 117
           L PPPP   +V + P +KK K+T DEPP  S++  SKQ   EEPK+GDGSRSRGRRKNKP
Sbjct: 61  LLPPPPA--DVADKPLQKKGKSTGDEPPI-SMEGASKQHESEEPKSGDGSRSRGRRKNKP 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIE61.1e-51100.00Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=... [more]
A0A0A0LRH23.2e-3887.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1[more]
A0A6J1KLK81.5e-2267.74uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353... [more]
A0A251R9L06.5e-0743.88Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G379600 PE=4 SV=1[more]
A0A314ZHL58.6e-0743.57Neuromodulin OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07055 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
KAA0065239.11.33e-68100.00zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa][more]
XP_038884964.11.82e-5487.18uncharacterized protein LOC120075548 [Benincasa hispida][more]
KGN62596.16.02e-5187.29hypothetical protein Csa_022088 [Cucumis sativus][more]
KAG7020516.12.91e-3368.55hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023537340.19.91e-3267.74uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..106
NoneNo IPR availablePANTHERPTHR37615NUCLEOPORIN NUP159-LIKEcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016358.2IVF0016358.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane