IVF0016272 (gene) Melon (IVF77) v1

Overview


Name	IVF0016272
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr02: 15119509 .. 15119727 (-)
RNA-Seq Expression	IVF0016272
Synteny	IVF0016272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTGGTCCATCAACTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGTACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGAAAACCAGCTCGAAATCGACGACGTCCGAGTTGTGGAATACATTGA

mRNA sequence

ATGGATGTTGGTCCATCAACTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGTACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGAAAACCAGCTCGAAATCGACGACGTCCGAGTTGTGGAATACATTGA

Coding sequence (CDS)

ATGGATGTTGGTCCATCAACTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGTACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGAAAACCAGCTCGAAATCGACGACGTCCGAGTTGTGGAATACATTGA

Protein sequence

MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKPARNRRRPSCGIH

Homology

[Close]

BLAST of IVF0016272 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           MDVGPS SYMHGHGRGYGEHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 80  MDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 139

Query: 61  ARNRRRPSCGIH 73
            RNRR  SCG H
Sbjct: 140 TRNRRHLSCGTH 151

[Close]

BLAST of IVF0016272 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           +DV PSTSYMHGH RGYGEHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 151 VDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 210

Query: 61  ARNRRRPSCGIH 73
            RNRRRP CG H
Sbjct: 211 TRNRRRPGCGTH 222

[Close]

BLAST of IVF0016272 vs. ExPASy TrEMBL
Match: A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-25
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           MDV PSTSYMHGH RGY EHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 119 MDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 178

Query: 61  ARNRRRPSCGIH 73
           A+NRRRP CG H
Sbjct: 179 AQNRRRPGCGTH 190

[Close]

BLAST of IVF0016272 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           +DV PSTSYMHGH RGYGEHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 139 VDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 198

Query: 61  ARNRRRPSCGIH 73
            RNRR P CG H
Sbjct: 199 TRNRRCPGCGTH 210

[Close]

BLAST of IVF0016272 vs. ExPASy TrEMBL
Match: A0A5A7V7U8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00310 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.5e-25
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           MDVGPSTSYMHGHGRGY EHN+YLYHE  AD+SD+QEYQQ+ ENQE++EQHRVQSRRR+P
Sbjct: 32  MDVGPSTSYMHGHGRGYEEHNKYLYHEASADISDQQEYQQKQENQENREQHRVQSRRRQP 91

Query: 61  ARNRRRPSCGIH 73
           ARNRRRP CG H
Sbjct: 92  ARNRRRPGCGTH 103

[Close]

BLAST of IVF0016272 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 9.74e-36
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           MDVGPS SYMHGHGRGYGEHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 80  MDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 139

Query: 61  ARNRRRPSCGIH 72
            RNRR  SCG H
Sbjct: 140 TRNRRHLSCGTH 151

[Close]

BLAST of IVF0016272 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 7.07e-35
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           +DV PSTSYMHGH RGYGEHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 151 VDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 210

Query: 61  ARNRRRPSCGIH 72
            RNRRRP CG H
Sbjct: 211 TRNRRRPGCGTH 222

[Close]

BLAST of IVF0016272 vs. NCBI nr
Match: KAA0064193.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK02836.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 2.23e-34
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           MDVGPSTSYMHGHGRGY EHN+YLYHE  AD+SD+QEYQQ+ ENQE++EQHRVQSRRR+P
Sbjct: 32  MDVGPSTSYMHGHGRGYEEHNKYLYHEASADISDQQEYQQKQENQENREQHRVQSRRRQP 91

Query: 61  ARNRRRPSCGIH 72
           ARNRRRP CG H
Sbjct: 92  ARNRRRPGCGTH 103

[Close]

BLAST of IVF0016272 vs. NCBI nr
Match: TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 3.42e-34
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           MDV PSTSYMHGH RGY EHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 119 MDVDPSTSYMHGHERGYEEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 178

Query: 61  ARNRRRPSCGIH 72
           A+NRRRP CG H
Sbjct: 179 AQNRRRPGCGTH 190

[Close]

BLAST of IVF0016272 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 1.67e-33
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKP 60
           +DV PSTSYMHGH RGYGEHNEYLYHE PADVSDRQEYQQE ENQED+EQHRVQSRRR+P
Sbjct: 139 VDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQP 198

Query: 61  ARNRRRPSCGIH 72
            RNRR P CG H
Sbjct: 199 TRNRRCPGCGTH 210

The following BLAST results are available for this feature:

BLAST of IVF0016272 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0016272 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX3	3.0e-26	87.50	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	3.0e-26	86.11	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DFZ9	1.9e-25	86.11	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3BSG8	4.3e-25	84.72	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V7U8	9.5e-25	81.94	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of IVF0016272 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049532.1	9.74e-36	87.50	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	7.07e-35	86.11	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0064193.1	2.23e-34	81.94	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK22189.1	3.42e-34	86.11	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK01176.1	1.67e-33	84.72	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of IVF0016272 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016272.1	IVF0016272.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance