IVF0016183 (gene) Melon (IVF77) v1

Overview
NameIVF0016183
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 12332829 .. 12333173 (-)
RNA-Seq ExpressionIVF0016183
SyntenyIVF0016183
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACATGCCTTCAATTTGCTAACCCATCAGGCACTTAATAATGACTTGGAGCCACTGCGCTTTGACTTGAACAAGCCTTTATCGATTTCGAAGGCTACCAATAATGAAGTGATTCCCCTCCCCGCGAAGGCCACGAAGAAAGACATCCCAATAATTGTTGTATTAAAAAAGAATGGAACACAATTTAAGGCGACGACATTGAACAAGCCGCAACAGCAAATTCAATTGGGAGTTACTGTTAATGACCCACTAGCCAAAAGAAAACAGCCTGCCATTGGAGTAACTAGGGAGACAAGCACCTCTGTACCGAGTCGCATTGAACCTCAAGAACCCACGACGTAA

mRNA sequence

ATGTCACATGCCTTCAATTTGCTAACCCATCAGGCACTTAATAATGACTTGGAGCCACTGCGCTTTGACTTGAACAAGCCTTTATCGATTTCGAAGGCTACCAATAATGAAGTGATTCCCCTCCCCGCGAAGGCCACGAAGAAAGACATCCCAATAATTGTTGTATTAAAAAAGAATGGAACACAATTTAAGGCGACGACATTGAACAAGCCGCAACAGCAAATTCAATTGGGAGTTACTGTTAATGACCCACTAGCCAAAAGAAAACAGCCTGCCATTGGAGTAACTAGGGAGACAAGCACCTCTGTACCGAGTCGCATTGAACCTCAAGAACCCACGACGTAA

Coding sequence (CDS)

ATGTCACATGCCTTCAATTTGCTAACCCATCAGGCACTTAATAATGACTTGGAGCCACTGCGCTTTGACTTGAACAAGCCTTTATCGATTTCGAAGGCTACCAATAATGAAGTGATTCCCCTCCCCGCGAAGGCCACGAAGAAAGACATCCCAATAATTGTTGTATTAAAAAAGAATGGAACACAATTTAAGGCGACGACATTGAACAAGCCGCAACAGCAAATTCAATTGGGAGTTACTGTTAATGACCCACTAGCCAAAAGAAAACAGCCTGCCATTGGAGTAACTAGGGAGACAAGCACCTCTGTACCGAGTCGCATTGAACCTCAAGAACCCACGACGTAA

Protein sequence

MSHAFNLLTHQALNNDLEPLRFDLNKPLSISKATNNEVIPLPAKATKKDIPIIVVLKKNGTQFKATTLNKPQQQIQLGVTVNDPLAKRKQPAIGVTRETSTSVPSRIEPQEPTT
Homology
[Close]
BLAST of IVF0016183 vs. ExPASy TrEMBL
Match: A0A5A7UFG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00220 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 19  PLRFDLNKPLSISKATNNEVIPLPAKATKKDIPIIVVLKKNGTQFKATTLNKPQQQIQLG 78
           P   DLN+PL + K    E+I LP K  K+ IPI+V+ +++ T+    T+NKPQ+Q +  
Sbjct: 296 PPHLDLNEPLLVPKVVPQELIALPTKGAKESIPIVVLSERDMTRNDMATVNKPQEQ-ETQ 355

Query: 79  VTVNDPLAKRKQPAIGVTRETSTSV 104
           V V+DPL+K K     V   TS+S+
Sbjct: 356 VNVDDPLSKAKHTNPNVAGMTSSSM 379

[Close]
BLAST of IVF0016183 vs. ExPASy TrEMBL
Match: A0A5D3BEA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00170 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 19  PLRFDLNKPLSISKATNNEVIPLPAKATKKDIPIIVVLKKNGTQFKATTLNKPQQQIQLG 78
           P   DLN+PL + K    E+I LP K  K+ IPI+V+ ++  T+    T+NKPQ+Q +  
Sbjct: 296 PPHLDLNEPLLVPKVVPQELIALPTKGAKESIPIVVLSERYTTRNDMATVNKPQEQ-ETQ 355

Query: 79  VTVNDPLAKRKQPAIGVTRETSTSV 104
           V V+DPL+K K     V   TS+S+
Sbjct: 356 VNVDDPLSKEKHTNPNVAGMTSSSM 379

[Close]
BLAST of IVF0016183 vs. NCBI nr
Match: KAA0053237.1 (hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 6.32e-09
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 19  PLRFDLNKPLSISKATNNEVIPLPAKATKKDIPIIVVLKKNGTQFKATTLNKPQQQIQLG 78
           P   DLN+PL + K    E+I LP K  K+ IPI+V+ +++ T+    T+NKPQ+Q +  
Sbjct: 296 PPHLDLNEPLLVPKVVPQELIALPTKGAKESIPIVVLSERDMTRNDMATVNKPQEQ-ETQ 355

Query: 79  VTVNDPLAKRKQPAIGVTRETSTSV 103
           V V+DPL+K K     V   TS+S+
Sbjct: 356 VNVDDPLSKAKHTNPNVAGMTSSSM 379

[Close]
BLAST of IVF0016183 vs. NCBI nr
Match: TYJ97633.1 (hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 8.46e-09
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0 

Query: 19  PLRFDLNKPLSISKATNNEVIPLPAKATKKDIPIIVVLKKNGTQFKATTLNKPQQQIQLG 78
           P   DLN+PL + K    E+I LP K  K+ IPI+V+ ++  T+    T+NKPQ+Q +  
Sbjct: 296 PPHLDLNEPLLVPKVVPQELIALPTKGAKESIPIVVLSERYTTRNDMATVNKPQEQ-ETQ 355

Query: 79  VTVNDPLAKRKQPAIGVTRETSTSV 103
           V V+DPL+K K     V   TS+S+
Sbjct: 356 VNVDDPLSKEKHTNPNVAGMTSSSM 379

The following BLAST results are available for this feature:
BLAST of IVF0016183 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0016183 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UFG41.9e-0641.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BEA42.4e-0641.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0016183 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053237.16.32e-0941.18hypothetical protein E6C27_scaffold102G00220 [Cucumis melo var. makuwa][more]
TYJ97633.18.46e-0941.18hypothetical protein E5676_scaffold469G00170 [Cucumis melo var. makuwa][more]
BLAST of IVF0016183 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0016183.1IVF0016183.1mRNA