IVF0016078 (gene) Melon (IVF77) v1

Overview


Name	IVF0016078
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Peptidylprolyl isomerase
Location	chr09: 16949315 .. 16949616 (-)
RNA-Seq Expression	IVF0016078
Synteny	IVF0016078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTATCATTACACTGTCAATGCAAGGATGTGAAGATTGAATACAAGCAATTGAAAGAGAAGGTGAGAGAATACAACAAGAGAGATGCACAGTTTTACAGCAACATTTTTTTTGCAAAAATGAACAAGTTGGAGCATGCTAAGTCTGTTGTAAGTTACAAAACCAAATAGCTAATTTTCCGGTCTTATTCTATTATGAAATGAACCATTTTGGATATAAGACATTGTAATTATGGGTTTTGTAGAATTCAGGAGGGAAGCAAGAGGCAGTACCAACGACCATCTATTGCAAAGCTTAA

mRNA sequence

ATGTGTGTATCATTACACTGTCAATGCAAGGATGTGAAGATTGAATACAAGCAATTGAAAGAGAAGGTGAGAGAATACAACAAGAGAGATGCACAGTTTTACAGCAACATTTTTTTTGCAAAAATGAACAAGTTGGAGCATGCTAAGTCTGTTAATTCAGGAGGGAAGCAAGAGGCAGTACCAACGACCATCTATTGCAAAGCTTAA

Coding sequence (CDS)

ATGTGTGTATCATTACACTGTCAATGCAAGGATGTGAAGATTGAATACAAGCAATTGAAAGAGAAGGTGAGAGAATACAACAAGAGAGATGCACAGTTTTACAGCAACATTTTTTTTGCAAAAATGAACAAGTTGGAGCATGCTAAGTCTGTTAATTCAGGAGGGAAGCAAGAGGCAGTACCAACGACCATCTATTGCAAAGCTTAA

Protein sequence

MCVSLHCQCKDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA

Homology

[Close]

BLAST of IVF0016078 vs. ExPASy Swiss-Prot
Match: Q9FJL3 (Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FKBP65 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-06
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 69
           K+VKIEYK+LKEKV+EYNK+DA+FYSN+       L      + G ++EA   +I  KA
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNM-------LSKMLEPHKGTQKEAQAMSIDTKA 578

[Close]

BLAST of IVF0016078 vs. ExPASy Swiss-Prot
Match: Q43207 (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-04
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNK 45
           +DVK+ YK LKEK++E NK+DA+FYSN+ F+KM K
Sbjct: 518 RDVKLTYKTLKEKIKEINKKDAKFYSNM-FSKMTK 551

[Close]

BLAST of IVF0016078 vs. ExPASy TrEMBL
Match: A0A5A7VJU8 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00110 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.0e-17
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 69
           +DVKIEY+QLKEKV+EYNKRDAQFY NI FAKMNKLEHAKS NSGGKQE VP TI  KA
Sbjct: 504 RDVKIEYRQLKEKVKEYNKRDAQFYGNI-FAKMNKLEHAKSANSGGKQEGVPMTIDSKA 561

[Close]

BLAST of IVF0016078 vs. ExPASy TrEMBL
Match: A0A0A0L633 (Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G172920 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.0e-17
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 69
           +DVKIEY+QL++KVREYNKRDAQFY NI FAKMNKLEHAKS NSGGKQEAVP TI  KA
Sbjct: 518 RDVKIEYRQLEDKVREYNKRDAQFYGNI-FAKMNKLEHAKSANSGGKQEAVPMTIDSKA 575

[Close]

BLAST of IVF0016078 vs. ExPASy TrEMBL
Match: A0A1S3AXS5 (Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103483953 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.0e-17
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 69
           +DVKIEY+QLKEKV+EYNKRDAQFY NI FAKMNKLEHAKS NSGGKQE VP TI  KA
Sbjct: 518 RDVKIEYRQLKEKVKEYNKRDAQFYGNI-FAKMNKLEHAKSANSGGKQEGVPMTIDSKA 575

[Close]

BLAST of IVF0016078 vs. ExPASy TrEMBL
Match: A0A0A0LB26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356080 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MCVSLHCQCKDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAV 60
          M VSL+CQC+DVKIEYKQLKEKVREY KRDAQFYSNI  AKMNKL+H +S  SGGKQ A 
Sbjct: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNI-LAKMNKLKHVESGKSGGKQGAE 60

Query: 61 PTTIYCK 68
          P  I  K
Sbjct: 61 PMIIDSK 66

[Close]

BLAST of IVF0016078 vs. ExPASy TrEMBL
Match: A0A6J1C818 (Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111009228 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 69
           ++VK+EY+QLK KV+EYNK+DAQFY NI FAKMNKLE AKS NS G QEAVP TI  KA
Sbjct: 517 REVKMEYRQLKAKVKEYNKKDAQFYGNI-FAKMNKLEQAKSANSSGNQEAVPMTIDGKA 574

[Close]

BLAST of IVF0016078 vs. NCBI nr
Match: KGN57867.1 (hypothetical protein Csa_011211 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.31e-23
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MCVSLHCQCKDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAV 60
          M VSL+CQC+DVKIEYKQLKEKVREY KRDAQFYSNI  AKMNKL+H +S  SGGKQ A 
Sbjct: 1  MRVSLYCQCRDVKIEYKQLKEKVREYTKRDAQFYSNIL-AKMNKLKHVESGKSGGKQGAE 60

Query: 61 PTTIYCK 67
          P  I  K
Sbjct: 61 PMIIDSK 66

[Close]

BLAST of IVF0016078 vs. NCBI nr
Match: KAA0067644.1 (70 kDa peptidyl-prolyl isomerase-like [Cucumis melo var. makuwa] >TYK23646.1 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 6.35e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 68
           +DVKIEY+QLKEKV+EYNKRDAQFY NIF AKMNKLEHAKS NSGGKQE VP TI  KA
Sbjct: 504 RDVKIEYRQLKEKVKEYNKRDAQFYGNIF-AKMNKLEHAKSANSGGKQEGVPMTIDSKA 561

[Close]

BLAST of IVF0016078 vs. NCBI nr
Match: XP_011651108.1 (70 kDa peptidyl-prolyl isomerase [Cucumis sativus] >KGN57238.1 hypothetical protein Csa_010602 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 6.44e-21
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 68
           +DVKIEY+QL++KVREYNKRDAQFY NIF AKMNKLEHAKS NSGGKQEAVP TI  KA
Sbjct: 518 RDVKIEYRQLEDKVREYNKRDAQFYGNIF-AKMNKLEHAKSANSGGKQEAVPMTIDSKA 575

[Close]

BLAST of IVF0016078 vs. NCBI nr
Match: XP_008439052.1 (PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 6.44e-21
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 68
           +DVKIEY+QLKEKV+EYNKRDAQFY NIF AKMNKLEHAKS NSGGKQE VP TI  KA
Sbjct: 518 RDVKIEYRQLKEKVKEYNKRDAQFYGNIF-AKMNKLEHAKSANSGGKQEGVPMTIDSKA 575

[Close]

BLAST of IVF0016078 vs. NCBI nr
Match: XP_038878197.1 (peptidyl-prolyl cis-trans isomerase FKBP62-like [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 5.14e-19
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 68
           ++VKIEY+QLKEKV+EYNKRDAQFY NIF AKMNKLE AKS NS GKQEAVP TI  KA
Sbjct: 518 REVKIEYRQLKEKVKEYNKRDAQFYGNIF-AKMNKLEQAKSANSAGKQEAVPMTIDSKA 575

[Close]

BLAST of IVF0016078 vs. TAIR 10
Match: AT5G48570.1 (FKBP-type peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 51.2 bits (121), Expect = 3.8e-07
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNKLEHAKSVNSGGKQEAVPTTIYCKA 69
           K+VKIEYK+LKEKV+EYNK+DA+FYSN+       L      + G ++EA   +I  KA
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNM-------LSKMLEPHKGTQKEAQAMSIDTKA 578

[Close]

BLAST of IVF0016078 vs. TAIR 10
Match: AT3G25230.1 (rotamase FKBP 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 19/35 (54.29%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIFFAKMNK 45
           ++VK+E K+LKEK++E+NK++A+FY N+ FAK++K
Sbjct: 517 REVKLEQKRLKEKMKEFNKKEAKFYGNM-FAKLSK 550

[Close]

BLAST of IVF0016078 vs. TAIR 10
Match: AT3G25230.2 (rotamase FKBP 1 )

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 16/29 (55.17%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 10  KDVKIEYKQLKEKVREYNKRDAQFYSNIF 39
           ++VK+E K+LKEK++E+NK++A+FY N+F
Sbjct: 517 REVKLEQKRLKEKMKEFNKKEAKFYGNMF 545

The following BLAST results are available for this feature:

BLAST of IVF0016078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJL3	5.3e-06	49.15	Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FK...	[more]
Q43207	1.3e-04	62.86	70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum OX=4565 GN=FKBP70 PE=1 SV=...	[more]

BLAST of IVF0016078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJU8	9.0e-17	83.05	Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0L633	9.0e-17	83.05	Peptidylprolyl isomerase OS=Cucumis sativus OX=3659 GN=Csa_3G172920 PE=4 SV=1	[more]
A0A1S3AXS5	9.0e-17	83.05	Peptidylprolyl isomerase OS=Cucumis melo OX=3656 GN=LOC103483953 PE=4 SV=1	[more]
A0A0A0LB26	2.6e-16	74.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356080 PE=4 SV=1	[more]
A0A6J1C818	6.1e-13	72.88	Peptidylprolyl isomerase OS=Momordica charantia OX=3673 GN=LOC111009228 PE=4 SV=...	[more]

BLAST of IVF0016078 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57867.1	1.31e-23	74.63	hypothetical protein Csa_011211 [Cucumis sativus]	[more]
KAA0067644.1	6.35e-21	83.05	70 kDa peptidyl-prolyl isomerase-like [Cucumis melo var. makuwa] >TYK23646.1 70 ...	[more]
XP_011651108.1	6.44e-21	83.05	70 kDa peptidyl-prolyl isomerase [Cucumis sativus] >KGN57238.1 hypothetical prot...	[more]
XP_008439052.1	6.44e-21	83.05	PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo]	[more]
XP_038878197.1	5.14e-19	79.66	peptidyl-prolyl cis-trans isomerase FKBP62-like [Benincasa hispida]	[more]

BLAST of IVF0016078 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48570.1	3.8e-07	49.15	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[more]
AT3G25230.1	1.0e-04	54.29	rotamase FKBP 1	[more]
AT3G25230.2	3.0e-04	55.17	rotamase FKBP 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0016078.1	IVF0016078.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity