IVF0015952 (gene) Melon (IVF77) v1

Overview


Name	IVF0015952
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr06: 4254269 .. 4254856 (+)
RNA-Seq Expression	IVF0015952
Synteny	IVF0015952

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTGGGTTAACTAATGCCCCTGCAGCCTTCATGGACTTGATGAATCGGGTGTTTCATTCATATCTAGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGTTTATTCAGAGAGTAAAGAAAAGCACGTCGAACACCTCAGGATAGTGTTGCAGACACTGTGGGATCGAGAGTTGTATGCTAAATTCAGTAAGTGCGAATTCTGGTTGGATCGGGTAGTATCTTTGGGTCATATGGTTTCAATGGAAGGCATTTGTGTTGATCCTAAAAAAATTGAAGCAGCAGACAAGTGTGAAAGACCTACCTCTATCACTGAGATCCAAAGTTTTCTTGGTTTATCGAGGTATTATCGTCAATTAGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACTAGGAAAAATGTAAAGTTTGAATGGACAGATGCTTGTGTATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTTACAACTCCAGTTTTAACACTTCTGACTCCTGGTATAGAATTCGAGATCTATTTTGATGCTTCTCATCAAGGTCTGGGTTGTGTATTGATGCAAAAGGAAAGGTAG

mRNA sequence

ATGCCCTTTGGGTTAACTAATGCCCCTGCAGCCTTCATGGACTTGATGAATCGGGTGTTTCATTCATATCTAGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGTTTATTCAGAGAGTAAAGAAAAGCACGTCGAACACCTCAGGATAGTGTTGCAGACACTGTGGGATCGAGAGTTGTATGCTAAATTCAGTAAGTGCGAATTCTGGTTGGATCGGGTAGTATCTTTGGGTCATATGGTTTCAATGGAAGGCATTTGTGTTGATCCTAAAAAAATTGAAGCAGCAGACAAGTGTGAAAGACCTACCTCTATCACTGAGATCCAAAGTTTTCTTGGTTTATCGAGGTATTATCGTCAATTAGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACTAGGAAAAATGTAAAGTTTGAATGGACAGATGCTTGTGTATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTTACAACTCCAGTTTTAACACTTCTGACTCCTGGTATAGAATTCGAGATCTATTTTGATGCTTCTCATCAAGGTCTGGGTTGTGTATTGATGCAAAAGGAAAGGTAG

Coding sequence (CDS)

ATGCCCTTTGGGTTAACTAATGCCCCTGCAGCCTTCATGGACTTGATGAATCGGGTGTTTCATTCATATCTAGATCAGTTTGTTATTGTGTTCATAGACGATATATTGGTTTATTCAGAGAGTAAAGAAAAGCACGTCGAACACCTCAGGATAGTGTTGCAGACACTGTGGGATCGAGAGTTGTATGCTAAATTCAGTAAGTGCGAATTCTGGTTGGATCGGGTAGTATCTTTGGGTCATATGGTTTCAATGGAAGGCATTTGTGTTGATCCTAAAAAAATTGAAGCAGCAGACAAGTGTGAAAGACCTACCTCTATCACTGAGATCCAAAGTTTTCTTGGTTTATCGAGGTATTATCGTCAATTAGTGGAAGGGTTTTCTAAATTGGCACTTCCATTAACCAACCTAACTAGGAAAAATGTAAAGTTTGAATGGACAGATGCTTGTGTATGGAGTTTTCAAGAGTTAAAGAAAAGGCTTGTTACAACTCCAGTTTTAACACTTCTGACTCCTGGTATAGAATTCGAGATCTATTTTGATGCTTCTCATCAAGGTCTGGGTTGTGTATTGATGCAAAAGGAAAGGTAG

Protein sequence

MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRELYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVLMQKER

Homology

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BLAST of IVF0015952 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-31
Identity = 74/193 (38.34%), Postives = 114/193 (59.07%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGL NAPA F   MN +    L++  +V++DDI+V+S S ++H++ L +V + L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           L  +  KCEF       LGH+++ +GI  +P+KIEA  K   PT   EI++FLGL+ YYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWS-FQELKKRLVTTPVLTLLTPGIEFEIYF 180
           + +  F+ +A P+T   +KN+K + T+    S F++LK  +   P+L +     +F +  
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513

Query: 181 DASHQGLGCVLMQ 193
           DAS   LG VL Q
Sbjct: 514 DASDVALGAVLSQ 526

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BLAST of IVF0015952 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 71/206 (34.47%), Postives = 116/206 (56.31%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           +PFGL NAPA F  +++ +   ++ +   V+IDDI+V+SE  + H ++LR+VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           L     K  F   +V  LG++V+ +GI  DPKK+ A  +   PTS+ E++ FLG++ YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 QLVEGFSKLALPLTNLTR-----------KNVKFEWTDACVWSFQELKKRLVTTPVLTLL 180
           + ++ ++K+A PLTNLTR             V     +  + SF +LK  L ++ +L   
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429

Query: 181 TPGIEFEIYFDASHQGLGCVLMQKER 196
                F +  DAS+  +G VL Q ++
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQ 455

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BLAST of IVF0015952 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.4e-29
Identity = 68/193 (35.23%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGL NAPA F   MN +    L++  +V++DDI+++S S  +H+  +++V   L D  
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           L  +  KCEF       LGH+V+ +GI  +P K++A      PT   EI++FLGL+ YYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTD-ACVWSFQELKKRLVTTPVLTLLTPGIEFEIYF 180
           + +  ++ +A P+T+  +K  K +      + +F++LK  ++  P+L L     +F +  
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512

Query: 181 DASHQGLGCVLMQ 193
           DAS+  LG VL Q
Sbjct: 513 DASNLALGAVLSQ 525

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BLAST of IVF0015952 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 63/193 (32.64%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MP+G++ APA F   +N +     +  V+ ++DDIL++S+S+ +HV+H++ VLQ L +  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           L    +KCEF   +V  +G+ +S +G     + I+   + ++P +  E++ FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           + +   S+L  PL NL +K+V+++WT     + + +K+ LV+ PVL       +  +  D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASHQGLGCVLMQK 194
           AS   +G VL QK
Sbjct: 714 ASDVAVGAVLSQK 726

[Close]

BLAST of IVF0015952 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 63/193 (32.64%), Postives = 111/193 (57.51%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MP+G++ APA F   +N +     +  V+ ++DDIL++S+S+ +HV+H++ VLQ L +  
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           L    +KCEF   +V  +G+ +S +G     + I+   + ++P +  E++ FLG   Y R
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           + +   S+L  PL NL +K+V+++WT     + + +K+ LV+ PVL       +  +  D
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713

Query: 181 ASHQGLGCVLMQK 194
           AS   +G VL QK
Sbjct: 714 ASDVAVGAVLSQK 726

[Close]

BLAST of IVF0015952 vs. ExPASy TrEMBL
Match: A0A5A7T0V4 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00160 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE
Sbjct: 343 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 402

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR
Sbjct: 403 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 462

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD
Sbjct: 463 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 522

Query: 181 ASHQGLGCVLMQK 194
           ASHQGLGCVLMQK
Sbjct: 523 ASHQGLGCVLMQK 535

[Close]

BLAST of IVF0015952 vs. ExPASy TrEMBL
Match: A0A5D3CQ91 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001650 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.9e-107
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE
Sbjct: 274 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 333

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR
Sbjct: 334 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 393

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD
Sbjct: 394 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 453

Query: 181 ASHQGLGCVLMQK 194
           ASHQGLGCVLMQK
Sbjct: 454 ASHQGLGCVLMQK 466

[Close]

BLAST of IVF0015952 vs. ExPASy TrEMBL
Match: A0A5A7TXH8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00910 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 160/195 (82.05%), Postives = 172/195 (88.21%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           M FGLTNAP AFMDLMN VFH YLDQFVI+FIDDILVYS SKEKH EHLRIV QTL DRE
Sbjct: 1   MLFGLTNAPTAFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRE 60

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWLDRV+ LGH+VS+EGICVDP+KIEA +K ERPTSI EI+SFL L+RYYR
Sbjct: 61  LYAKFSKCEFWLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYR 120

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           + VEGFSKLAL LTNLT+KNVKFEWTDAC WSFQELKKRLVT PVLTL TP +EFEI  D
Sbjct: 121 RFVEGFSKLALSLTNLTKKNVKFEWTDACEWSFQELKKRLVTAPVLTLPTPNVEFEICCD 180

Query: 181 ASHQGLGCVLMQKER 196
           AS+QGLG VLMQK R
Sbjct: 181 ASYQGLGYVLMQKRR 195

[Close]

BLAST of IVF0015952 vs. ExPASy TrEMBL
Match: A0A5D3CAQ2 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00480 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.7e-81
Identity = 152/185 (82.16%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 11  AFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRELYAKFSKCEF 70
           AFMDLMN VFH YLDQFVI+FIDDILVYS SKEKH EHLRIV QTL DRELYAKFSKCEF
Sbjct: 84  AFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRELYAKFSKCEF 143

Query: 71  WLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLA 130
           WLDRV+ LGH+VS+EGICVDP+KIEA +K ERPTSI EI+SFL L+RYYR+ VEGFSKLA
Sbjct: 144 WLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYRRFVEGFSKLA 203

Query: 131 LPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVL 190
           L LTNLT+KNVKFEWTDAC WSFQELKKRLVT PVLTL TP +EFEI  DAS+QGLG VL
Sbjct: 204 LSLTNLTKKNVKFEWTDACEWSFQELKKRLVTAPVLTLPTPNVEFEICCDASYQGLGYVL 263

Query: 191 MQKER 196
           MQK R
Sbjct: 264 MQKRR 268

[Close]

BLAST of IVF0015952 vs. ExPASy TrEMBL
Match: A0A5A7T306 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00050 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 9.4e-75
Identity = 138/194 (71.13%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGLTNAPA FMD MNR+FH YLDQFVIVFIDDILVYS  +E H EHLRIVLQTL D++
Sbjct: 83  MPFGLTNAPAVFMDFMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLRDKQ 142

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWL++VV LGH+VS +G+ VDP+K+EA    ERPTS TE++SFLGL+ YYR
Sbjct: 143 LYAKFSKCEFWLEQVVFLGHVVSAKGVGVDPQKVEAVVNWERPTSATEVRSFLGLAGYYR 202

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           + +E FS+LALPLT +TRKN KFEW+D C  SFQELKKRLVT P+L LL  G ++ IY D
Sbjct: 203 RFIEDFSRLALPLTAMTRKNAKFEWSDKCEQSFQELKKRLVTAPILALLVTGKDYVIYCD 262

Query: 181 ASHQGLGCVLMQKE 195
           AS  GLGCVLMQ E
Sbjct: 263 ASRLGLGCVLMQDE 276

[Close]

BLAST of IVF0015952 vs. NCBI nr
Match: TYK13961.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 397 bits (1019), Expect = 3.66e-130
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE
Sbjct: 274 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 333

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR
Sbjct: 334 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 393

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD
Sbjct: 394 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 453

Query: 181 ASHQGLGCVLMQK 193
           ASHQGLGCVLMQK
Sbjct: 454 ASHQGLGCVLMQK 466

[Close]

BLAST of IVF0015952 vs. NCBI nr
Match: KAA0037114.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 397 bits (1019), Expect = 1.68e-129
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE
Sbjct: 343 MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 402

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR
Sbjct: 403 LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 462

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD
Sbjct: 463 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 522

Query: 181 ASHQGLGCVLMQK 193
           ASHQGLGCVLMQK
Sbjct: 523 ASHQGLGCVLMQK 535

[Close]

BLAST of IVF0015952 vs. NCBI nr
Match: KAA0047618.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 324 bits (830), Expect = 3.01e-106
Identity = 160/195 (82.05%), Postives = 172/195 (88.21%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           M FGLTNAP AFMDLMN VFH YLDQFVI+FIDDILVYS SKEKH EHLRIV QTL DRE
Sbjct: 1   MLFGLTNAPTAFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRE 60

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWLDRV+ LGH+VS+EGICVDP+KIEA +K ERPTSI EI+SFL L+RYYR
Sbjct: 61  LYAKFSKCEFWLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYR 120

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           + VEGFSKLAL LTNLT+KNVKFEWTDAC WSFQELKKRLVT PVLTL TP +EFEI  D
Sbjct: 121 RFVEGFSKLALSLTNLTKKNVKFEWTDACEWSFQELKKRLVTAPVLTLPTPNVEFEICCD 180

Query: 181 ASHQGLGCVLMQKER 195
           AS+QGLG VLMQK R
Sbjct: 181 ASYQGLGYVLMQKRR 195

[Close]

BLAST of IVF0015952 vs. NCBI nr
Match: TYK08274.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 308 bits (790), Expect = 2.47e-99
Identity = 152/185 (82.16%), Postives = 164/185 (88.65%), Query Frame = 0


Query: 11  AFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRELYAKFSKCEF 70
           AFMDLMN VFH YLDQFVI+FIDDILVYS SKEKH EHLRIV QTL DRELYAKFSKCEF
Sbjct: 84  AFMDLMNLVFHPYLDQFVIMFIDDILVYSRSKEKHAEHLRIVWQTLRDRELYAKFSKCEF 143

Query: 71  WLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYRQLVEGFSKLA 130
           WLDRV+ LGH+VS+EGICVDP+KIEA +K ERPTSI EI+SFL L+RYYR+ VEGFSKLA
Sbjct: 144 WLDRVIYLGHVVSVEGICVDPQKIEAVNKWERPTSIIEIRSFLSLARYYRRFVEGFSKLA 203

Query: 131 LPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFDASHQGLGCVL 190
           L LTNLT+KNVKFEWTDAC WSFQELKKRLVT PVLTL TP +EFEI  DAS+QGLG VL
Sbjct: 204 LSLTNLTKKNVKFEWTDACEWSFQELKKRLVTAPVLTLPTPNVEFEICCDASYQGLGYVL 263

Query: 191 MQKER 195
           MQK R
Sbjct: 264 MQKRR 268

[Close]

BLAST of IVF0015952 vs. NCBI nr
Match: TYK23887.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 284 bits (727), Expect = 3.64e-92
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 1   MPFGLTNAPAAFMDLMNRVFHSYLDQFVIVFIDDILVYSESKEKHVEHLRIVLQTLWDRE 60
           MPFGLTNAPA FMDLMNR+FH YLDQFVIVFIDDILVYS  +E H EHLRIVLQTL +++
Sbjct: 1   MPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQ 60

Query: 61  LYAKFSKCEFWLDRVVSLGHMVSMEGICVDPKKIEAADKCERPTSITEIQSFLGLSRYYR 120
           LYAKFSKCEFWL++VV LGH+VS +G+ VDP+K+EA    ERP S TE++SFLGL+ YYR
Sbjct: 61  LYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYR 120

Query: 121 QLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTTPVLTLLTPGIEFEIYFD 180
           + +E FS+LALPLT LTRKNVKFEW+D C  SFQELKKRLVT P+L L   G ++ IY D
Sbjct: 121 RFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCD 180

Query: 181 ASHQGLGCVLMQ 192
           AS  GLGCVLMQ
Sbjct: 181 ASRLGLGCVLMQ 192

[Close]

BLAST of IVF0015952 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-20
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 46  VEHLRIVLQTLWDRELYAKFSKCEFWLDRVVSLG--HMVSMEGICVDPKKIEAADKCERP 105
           + HL +VLQ     + YA   KC F   ++  LG  H++S EG+  DP K+EA      P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 106 TSITEIQSFLGLSRYYRQLVEGFSKLALPLTNLTRKNVKFEWTDACVWSFQELKKRLVTT 165
            + TE++ FLGL+ YYR+ V+ + K+  PLT L +KN   +WT+    +F+ LK  + T 
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTL 120

Query: 166 PVLTL 169
           PVL L
Sbjct: 121 PVLAL 124

The following BLAST results are available for this feature:

BLAST of IVF0015952 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.1e-31	38.34	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q8I7P9	1.4e-30	34.47	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	3.4e-29	35.23	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	7.0e-27	32.64	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.0e-27	32.64	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of IVF0015952 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0V4	1.9e-107	100.00	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CQ91	1.9e-107	100.00	Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7TXH8	1.5e-85	82.05	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CAQ2	8.7e-81	82.16	Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7T306	9.4e-75	71.13	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0015952 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13961.1	3.66e-130	100.00	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0037114.1	1.68e-129	100.00	putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0047618.1	3.01e-106	82.05	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK08274.1	2.47e-99	82.16	retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]	[more]
TYK23887.1	3.64e-92	71.35	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015952 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.0e-20	39.20	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..176 e-value: 4.0E-24 score: 86.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..87 e-value: 2.5E-30 score: 107.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 1..79 e-value: 1.1E-14 score: 54.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..82 score: 8.691126
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 145..194 e-value: 3.2E-12 score: 46.3
None	No IPR available	PANTHER	PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	coord: 1..192
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 7.55895E-33 score: 114.23
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015952.1	IVF0015952.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding