IVF0015454 (gene) Melon (IVF77) v1

Overview


Name	IVF0015454
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr08: 26924340 .. 26924816 (-)
RNA-Seq Expression	IVF0015454
Synteny	IVF0015454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCAAGAAGGATACGAGTCACCCGTTGAGCAAGCTGTTGAAGGGCCAACGATACGAGGACTTACTACACAACGATCTCCTTCCAAGCGACCCAAGACTAAGGCCTTGGCTACTAAAGATACAACCGACACTCACCTAGCCAACTTGGAGGAACTTTTTGAGGATGTGCAAAGTACGGTTGGTAGGTTGAGTGATGATTATGAGGGGCTAGTCCGAGAGAATGTCGAGATCAGTGCTGCTGCTAAAGAAATGATTAAGGAGATTGGACGATCATTTTGTAGAGACCTAAATGCTCTATCAAAAGATGTGGCCAACCTAAAGAAATTCGTAGAAGGGGAGATCTACGAATTACATAAGGAAGTTGAACGCATCTATTTTGAGTATAATACTCTCCGTGCCACTACAAATGGTCAAGTGTTGACCATGGCGCATTCATTGCGTAGGAACAAGGGCAAGTTACTCACGGCTTAA

mRNA sequence

ATGGCTTCCCAAGAAGGATACGAGTCACCCGTTGAGCAAGCTGTTGAAGGGCCAACGATACGAGGACTTACTACACAACGATCTCCTTCCAAGCGACCCAAGACTAAGGCCTTGGCTACTAAAGATACAACCGACACTCACCTAGCCAACTTGGAGGAACTTTTTGAGGATGTGCAAAGTACGGTTGGTAGGTTGAGTGATGATTATGAGGGGCTAGTCCGAGAGAATGTCGAGATCAGTGCTGCTGCTAAAGAAATGATTAAGGAGATTGGACGATCATTTTGTAGAGACCTAAATGCTCTATCAAAAGATGTGGCCAACCTAAAGAAATTCGTAGAAGGGGAGATCTACGAATTACATAAGGAAGTTGAACGCATCTATTTTGAGTATAATACTCTCCGTGCCACTACAAATGGTCAAGTGTTGACCATGGCGCATTCATTGCGTAGGAACAAGGGCAAGTTACTCACGGCTTAA

Coding sequence (CDS)

ATGGCTTCCCAAGAAGGATACGAGTCACCCGTTGAGCAAGCTGTTGAAGGGCCAACGATACGAGGACTTACTACACAACGATCTCCTTCCAAGCGACCCAAGACTAAGGCCTTGGCTACTAAAGATACAACCGACACTCACCTAGCCAACTTGGAGGAACTTTTTGAGGATGTGCAAAGTACGGTTGGTAGGTTGAGTGATGATTATGAGGGGCTAGTCCGAGAGAATGTCGAGATCAGTGCTGCTGCTAAAGAAATGATTAAGGAGATTGGACGATCATTTTGTAGAGACCTAAATGCTCTATCAAAAGATGTGGCCAACCTAAAGAAATTCGTAGAAGGGGAGATCTACGAATTACATAAGGAAGTTGAACGCATCTATTTTGAGTATAATACTCTCCGTGCCACTACAAATGGTCAAGTGTTGACCATGGCGCATTCATTGCGTAGGAACAAGGGCAAGTTACTCACGGCTTAA

Protein sequence

MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQSTVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELHKEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA

Homology

[Close]

BLAST of IVF0015454 vs. ExPASy TrEMBL
Match: A0A5D3BYX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00540 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.1e-79
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           MASQEGYESPVEQ VEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
           TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 159
           KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA
Sbjct: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 158

[Close]

BLAST of IVF0015454 vs. ExPASy TrEMBL
Match: A0A5A7VIG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00500 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.5e-78
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           MASQEGYESPVEQ VEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
           TVGRLSDDYEGLVRENVEISAAAKE+IKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 159
           KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA
Sbjct: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 158

[Close]

BLAST of IVF0015454 vs. ExPASy TrEMBL
Match: A0A5A7SPK5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00950 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQ +EGP  RG   Q SP++R K+K LA ++  DT L NLE+  EDVQ 
Sbjct: 57  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 116

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLSD++E LV+EN EI++ AKEMI+++G++F ++L  L+  V  LK FVEGE+++LH
Sbjct: 117 AVGRLSDNFEELVQENAEITSVAKEMIEDMGQTFQKELKELASTVTTLKAFVEGELHDLH 176

[Close]

BLAST of IVF0015454 vs. ExPASy TrEMBL
Match: A0A5D3E2T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00690 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQ +EGP  RG   Q SP++R K+K LA ++  DT L NLE+  EDVQ 
Sbjct: 1   MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLSD++E LV+EN EI++ AKEMI+++G++F ++L  L+  V  LK FVEGE+++LH
Sbjct: 61  AVGRLSDNFEELVQENAEITSVAKEMIEDMGQTFQKELKELASTVTTLKAFVEGELHDLH 120

[Close]

BLAST of IVF0015454 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 62/120 (51.67%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQ +EGP  RG   Q SP++R K+K  A ++  DT L NLE+  EDVQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLS+ +E LV+EN EI++ AKEMI+++GR+F ++L  L+  V  LK FVEGE+++LH
Sbjct: 61  AVGRLSEIFEELVQENAEITSVAKEMIEDMGRTFQKELRELASTVTTLKAFVEGELHDLH 120

[Close]

BLAST of IVF0015454 vs. NCBI nr
Match: TYK04320.1 (uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 1.73e-104
Identity = 157/158 (99.37%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           MASQEGYESPVEQ VEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
           TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 158
           KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA
Sbjct: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 158

[Close]

BLAST of IVF0015454 vs. NCBI nr
Match: KAA0067893.1 (uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 304 bits (778), Expect = 7.04e-104
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           MASQEGYESPVEQ VEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS
Sbjct: 1   MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
           TVGRLSDDYEGLVRENVEISAAAKE+IKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH
Sbjct: 61  TVGRLSDDYEGLVRENVEISAAAKEIIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120

Query: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 158
           KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA
Sbjct: 121 KEVERIYFEYNTLRATTNGQVLTMAHSLRRNKGKLLTA 158

[Close]

BLAST of IVF0015454 vs. NCBI nr
Match: TYK30387.1 (uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 1.00e-33
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQ +EGP  RG   Q SP++R K+K LA ++  DT L NLE+  EDVQ 
Sbjct: 1   MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLSD++E LV+EN EI++ AKEMI+++G++F ++L  L+  V  LK FVEGE+++LH
Sbjct: 61  AVGRLSDNFEELVQENAEITSVAKEMIEDMGQTFQKELKELASTVTTLKAFVEGELHDLH 120

[Close]

BLAST of IVF0015454 vs. NCBI nr
Match: KAA0032830.1 (uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 3.25e-33
Identity = 63/120 (52.50%), Postives = 90/120 (75.00%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQ +EGP  RG   Q SP++R K+K LA ++  DT L NLE+  EDVQ 
Sbjct: 57  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGLAVREHVDTRLTNLEQGMEDVQL 116

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLSD++E LV+EN EI++ AKEMI+++G++F ++L  L+  V  LK FVEGE+++LH
Sbjct: 117 AVGRLSDNFEELVQENAEITSVAKEMIEDMGQTFQKELKELASTVTTLKAFVEGELHDLH 176

[Close]

BLAST of IVF0015454 vs. NCBI nr
Match: KAA0040414.1 (uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.65e-30
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MASQEGYESPVEQAVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60
           M+++EG+ SPVEQ +EGP  RG   Q SP++R K+K  A ++  DT L NLE+  EDVQ 
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  TVGRLSDDYEGLVRENVEISAAAKEMIKEIGRSFCRDLNALSKDVANLKKFVEGEIYELH 120
            VGRLS+++E LV+EN EI++ AKEMI+++GR+F  +L  L+  V  LK FVEGE++ LH
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNLH 120

The following BLAST results are available for this feature:

BLAST of IVF0015454 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYX0	5.1e-79	99.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VIG6	1.5e-78	98.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SPK5	1.0e-26	52.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E2T1	1.0e-26	52.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7THC0	1.5e-25	51.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of IVF0015454 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04320.1	1.73e-104	99.37	uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa]	[more]
KAA0067893.1	7.04e-104	98.73	uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa]	[more]
TYK30387.1	1.00e-33	52.50	uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa]	[more]
KAA0032830.1	3.25e-33	52.50	uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa]	[more]
KAA0040414.1	2.65e-30	51.67	uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015454 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015454.1	IVF0015454.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process