IVF0015393 (gene) Melon (IVF77) v1

Overview


Name	IVF0015393
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr03: 17123965 .. 17124141 (-)
RNA-Seq Expression	IVF0015393
Synteny	IVF0015393

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATACCTTTATTTGAGGGAAAAACTGCATGGGTCCTACAGTCTTCTATCCATAACGAGGCTCATAATTATGATAAAGCTCTCACTCTCGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGCGTTGTGACCAAGGTCCCTAGAGAGTTCTGCTTTGTTGAATGCTATTGA

mRNA sequence

ATGGAGATACCTTTATTTGAGGGAAAAACTGCATGGGTCCTACAGTCTTCTATCCATAACGAGGCTCATAATTATGATAAAGCTCTCACTCTCGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGCGTTGTGACCAAGGTCCCTAGAGAGTTCTGCTTTGTTGAATGCTATTGA

Coding sequence (CDS)

ATGGAGATACCTTTATTTGAGGGAAAAACTGCATGGGTCCTACAGTCTTCTATCCATAACGAGGCTCATAATTATGATAAAGCTCTCACTCTCGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGCGTTGTGACCAAGGTCCCTAGAGAGTTCTGCTTTGTTGAATGCTATTGA

Protein sequence

MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY

Homology

[Close]

BLAST of IVF0015393 vs. ExPASy TrEMBL
Match: A0A5D3BQ12 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1923G00140 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.7e-22
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 59
           +E+PLFEGK+AWVLQSSIHNEAHN  +ALTLGQRLIEGQTRWG+VTKVP EFCF +CY
Sbjct: 75  VEVPLFEGKSAWVLQSSIHNEAHNSSRALTLGQRLIEGQTRWGIVTKVPGEFCFTDCY 132

[Close]

BLAST of IVF0015393 vs. ExPASy TrEMBL
Match: A0A5D3DTH1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00330 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 59
           +EIPLFEGKTAWVLQSSIHNE  N D+ LTLGQ LIEGQTRWG +TKVPREFCF +CY
Sbjct: 86  VEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 143

[Close]

BLAST of IVF0015393 vs. ExPASy TrEMBL
Match: A0A5A7T019 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00490 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 59
           +E+PLFEGK+AWVLQSSIHNEA N  +ALTLGQRLIEGQTRWG VTKVP EFCF +CY
Sbjct: 56  VEVPLFEGKSAWVLQSSIHNEAPNSSRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCY 113

[Close]

BLAST of IVF0015393 vs. ExPASy TrEMBL
Match: A0A1S3B4Q9 (uncharacterized protein LOC103486002 OS=Cucumis melo OX=3656 GN=LOC103486002 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 59
           +EIPLFEGKTAWVLQSSIHNE  N D+ LTLGQ LIEGQTRWG +TKVPREFCF +CY
Sbjct: 66  VEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 123

[Close]

BLAST of IVF0015393 vs. ExPASy TrEMBL
Match: A0A5D3D2X6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004010 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-20
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 59
           +E+PL EGK+AWVLQSSIHNEA N  +ALTLGQRLIEGQTRWG VTKVPREFCF +CY
Sbjct: 82  VEVPLSEGKSAWVLQSSIHNEAPNPGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCY 139

[Close]

BLAST of IVF0015393 vs. NCBI nr
Match: KAA0043270.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK29334.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 1.32e-27
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 58
          MEIPL EGK AWVLQSSIHN+A N D+ALTL QRLIEGQTRWG VTKVPREFCF +CY
Sbjct: 1  MEIPLSEGKNAWVLQSSIHNKALNSDRALTLRQRLIEGQTRWGAVTKVPREFCFTDCY 58

[Close]

BLAST of IVF0015393 vs. NCBI nr
Match: XP_008442010.1 (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 105 bits (262), Expect = 4.30e-27
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 58
           +EIPLFEGKTAWVLQSSIHNE  N D+ LTLGQ LIEGQTRWG +TKVPREFCF +CY
Sbjct: 66  VEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 123

[Close]

BLAST of IVF0015393 vs. NCBI nr
Match: KAA0041757.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27047.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 7.31e-27
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 58
           +EIPLFEGKTAWVLQSSIHNE  N D+ LTLGQ LIEGQTRWG +TKVPREFCF +CY
Sbjct: 86  VEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 143

[Close]

BLAST of IVF0015393 vs. NCBI nr
Match: KAA0057574.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 1.51e-26
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 58
           +E+PL EGK+AWVLQSSIHNEA N  KALTLGQRLIEGQTRWG VTKVP EFCF +CY
Sbjct: 75  VEVPLSEGKSAWVLQSSIHNEASNSGKALTLGQRLIEGQTRWGTVTKVPGEFCFTDCY 132

[Close]

BLAST of IVF0015393 vs. NCBI nr
Match: TYK00336.1 (hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (275), Expect = 2.34e-26
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   MEIPLFEGKTAWVLQSSIHNEAHNYDKALTLGQRLIEGQTRWGVVTKVPREFCFVECY 58
           +E+PLFEGK+AWVLQSSIHNEAHN  +ALTLGQRLIEGQTRWG+VTKVP EFCF +CY
Sbjct: 75  VEVPLFEGKSAWVLQSSIHNEAHNSSRALTLGQRLIEGQTRWGIVTKVPGEFCFTDCY 132

The following BLAST results are available for this feature:

BLAST of IVF0015393 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015393 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQ12	4.7e-22	82.76	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5D3DTH1	1.5e-20	81.03	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7T019	1.5e-20	81.03	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3B4Q9	1.5e-20	81.03	uncharacterized protein LOC103486002 OS=Cucumis melo OX=3656 GN=LOC103486002 PE=...	[more]
A0A5D3D2X6	3.3e-20	81.03	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of IVF0015393 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043270.1	1.32e-27	82.76	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK29334.1 putative m...	[more]
XP_008442010.1	4.30e-27	81.03	PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo]	[more]
KAA0041757.1	7.31e-27	81.03	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27047.1 putative m...	[more]
KAA0057574.1	1.51e-26	81.03	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK00336.1	2.34e-26	82.76	hypothetical protein E5676_scaffold1923G00140 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015393 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015393.1	IVF0015393.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane