IVF0015098 (gene) Melon (IVF77) v1

Overview


Name	IVF0015098
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr03: 12028274 .. 12028537 (+)
RNA-Seq Expression	IVF0015098
Synteny	IVF0015098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGTAGAAGTCATTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAAAAATCCTTACCGAAAACTCACCGTGACCCGGAGTGGAGGAAGGAAGGCTTAG

mRNA sequence

ATGACTCTAGTAGAAGTCATTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAAAAATCCTTACCGAAAACTCACCGTGACCCGGAGTGGAGGAAGGAAGGCTTAG

Coding sequence (CDS)

ATGACTCTAGTAGAAGTCATTTTAAAAGGTCCGAAACGACACCCGTTGACTTACCCAAGGAAAGGAAAGCTATCTCCAAACAAGCCTGCCGCGGGACCCGAGAACTTAAGCGTCAACTCCTTACTACCTTCAAGGGAGAAAAGTAGGGCCATATCTTATTCCAATATTCAAACTCGAATCGGATGTAGCAACATTAGGGAATTCATCGAAAAAAATCCTTACCGAAAACTCACCGTGACCCGGAGTGGAGGAAGGAAGGCTTAG

Protein sequence

MTLVEVILKGPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLTVTRSGGRKA

Homology

[Close]

BLAST of IVF0015098 vs. ExPASy TrEMBL
Match: A0A5A7TNL7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00460 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.8e-25
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIE NPYR+LT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0015098 vs. ExPASy TrEMBL
Match: A0A5A7ULW2 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004710 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.8e-25
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIE NPYR+LT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0015098 vs. ExPASy TrEMBL
Match: A0A5A7SQ80 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00300 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.1e-22
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIE NPYR+L 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0015098 vs. ExPASy TrEMBL
Match: A0A5A7UMJ9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold741G00020 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  EKNPYRK 77
           E NP R+
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0015098 vs. ExPASy TrEMBL
Match: A0A5A7UGC7 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G001680 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.6e-20
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIE NPYR+LT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 88
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

[Close]

BLAST of IVF0015098 vs. NCBI nr
Match: KAA0054655.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 1.31e-32
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIE NPYR+LT
Sbjct: 131 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 190

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 191 VTRSGGRKA 199

[Close]

BLAST of IVF0015098 vs. NCBI nr
Match: KAA0043181.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 3.53e-31
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP KPAAGPENLSVNS+LPSREKSRAISYSNIQT IGCSNIREFIE NPYR+LT
Sbjct: 277 PKERKLSPTKPAAGPENLSVNSVLPSREKSRAISYSNIQTLIGCSNIREFIENNPYRRLT 336

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 337 VTRSGGRKA 345

[Close]

BLAST of IVF0015098 vs. NCBI nr
Match: KAA0032698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 5.69e-29
Identity = 57/69 (82.61%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP +PAA PENLSVNS LPSREKSR ISYSNIQT IGCSNIREFIE NPYR+L 
Sbjct: 146 PQERKLSPTRPAAEPENLSVNSALPSREKSRVISYSNIQTLIGCSNIREFIENNPYRRLA 205

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 206 VTRSGGRKA 214

[Close]

BLAST of IVF0015098 vs. NCBI nr
Match: KAA0057143.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (276), Expect = 5.55e-27
Identity = 57/67 (85.07%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 10  GPKRHPLTYPRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFI 69
           G KRHPLTYPRKGKL PNKP A PEN SVNS+LPSREKSRAISYSNIQT IGCSNIREFI
Sbjct: 76  GQKRHPLTYPRKGKLPPNKPTARPENSSVNSVLPSREKSRAISYSNIQTLIGCSNIREFI 135

Query: 70  EKNPYRK 76
           E NP R+
Sbjct: 136 E-NPERR 141

[Close]

BLAST of IVF0015098 vs. NCBI nr
Match: KAA0054224.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 2.36e-26
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 19  PRKGKLSPNKPAAGPENLSVNSLLPSREKSRAISYSNIQTRIGCSNIREFIEKNPYRKLT 78
           P++ KLSP +P A PEN SV S LPS+EKSRAI+YSNIQ  IGCSNIREFIE NPYR+LT
Sbjct: 110 PKERKLSPTRPTARPENPSVKSELPSKEKSRAITYSNIQALIGCSNIREFIENNPYRRLT 169

Query: 79  VTRSGGRKA 87
           VTRSGGRKA
Sbjct: 170 VTRSGGRKA 178

The following BLAST results are available for this feature:

BLAST of IVF0015098 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0015098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNL7	6.8e-25	88.41	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ULW2	6.8e-25	88.41	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7SQ80	3.1e-22	82.61	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UMJ9	2.0e-21	85.07	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UGC7	6.6e-20	76.81	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0015098 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054655.1	1.31e-32	88.41	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043181.1	3.53e-31	88.41	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032698.1	5.69e-29	82.61	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0057143.1	5.55e-27	85.07	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0054224.1	2.36e-26	76.81	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0015098 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0015098.1	IVF0015098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane