IVF0014867 (gene) Melon (IVF77) v1

Overview


Name	IVF0014867
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	sigma factor binding protein 2, chloroplastic
Location	chr08: 10265181 .. 10266016 (-)
RNA-Seq Expression	IVF0014867
Synteny	IVF0014867

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACGCTCCTTGTCGGCGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCCCTCTCCTAATCCCTATGTTTTTCCTCACTCTCTCTCCTTTCCCCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGATCCTTGTATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAACATGTATAATTGTATATTAATTGGGGAGTAATCGTTAACTTGTGAAAAAAATATCAAGGTATCAAATTTATGATAAAAAGATGTTTTAATAAATTAAAAGGAATATGTGGATATTTTAATTTA

mRNA sequence

ATACGCTCCTTGTCGGCGCTTGGCTTCCTCTCTCCCAATTAAATTCTTGTCGGTTTCTTCCCTCTCCTAATCCCTATGTTTTTCCTCACTCTCTCTCCTTTCCCCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGAAAATATTTTTTGATATTATAATGTGTGAAAGATCCTTGTATCTCTTTAATTTTATCTTCCATTTTTCTATAAGCTTTTTTAATGAACATGTATAATTGTATATTAATTGGGGAGTAATCGTTAACTTGTGAAAAAAATATCAAGGTATCAAATTTATGATAAAAAGATGTTTTAATAAATTAAAAGGAATATGTGGATATTTTAATTTA

Coding sequence (CDS)

ATGTTTTTCCTCACTCTCTCTCCTTTCCCCCTAAAAAACCCTTTTCCCCCTTCCAAAATGGACGCCGGCGCCGCCACCGGAAACAACCCCCGAACTCTCGACGCCGTTTACCGGCGTAAACCTGCCAAGAAAACAAAACAATCCAACAAGAAATTAAAAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTGGTCCAAGAACTCACCGGCCAAGACGCTGACTTTCCTGACCCCTCTAAACTCCCCCCATCCGCGGTATGCGACGACGCCGCCTCCACCGACCAACTCTACAACACGGTATCAGGTGGCGGTGACGACGACGGTGCTAGTAATCTTATTGTGAATAGTAACAACCCTTCACTTGTTGACGACGTGCCGGCGGAGGACGACATTCTCGGTAGCTTTTATGACGACTTTGACGACTTGATTTTTCCTCCTCCGGTAATGGGAAACTTATCTGGGTTGCTTCCGGGTCCCGTGGCAGCGGTTGTCTATGAATCTAATGCAAGGTGA

Protein sequence

MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR

Homology

[Close]

BLAST of IVF0014867 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-07
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 20 MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASE 79
          M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+
Sbjct: 1  MESSSSTFLTTTSLD---KKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASK 60

Query: 80 FMALVQELTGQDA-DF-PDPSKLPPS 98
          F  LVQELTGQDA D  P+P   P S
Sbjct: 61 FRELVQELTGQDAVDLQPEPIYSPSS 83

[Close]

BLAST of IVF0014867 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 44  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDA 103
           K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     + LPPS     A
Sbjct: 25  KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA-----ADLPPSPTTFTA 84

Query: 104 ASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAEDDILGSFYDDFDDLIFPPPV 163
                                  V+ + P  S ++  P + ++ G +Y   D+ +F  P 
Sbjct: 85  -----------------------VDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNAPQ 134

Query: 164 MGNLSGLLPGPVAAVVYESNA 183
           M   S  L G  ++  Y  NA
Sbjct: 145 M---SAGLSGFFSSGFYNVNA 134

[Close]

BLAST of IVF0014867 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY 60
           MF LTLSPFPLKNPF PSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY
Sbjct: 1   MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY 60

Query: 61  ISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDD 120
           ISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDD
Sbjct: 61  ISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDD 120

Query: 121 GASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYES 180
           GASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYES
Sbjct: 121 GASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYES 180

Query: 181 NAR 184
           NAR
Sbjct: 181 NAR 183

[Close]

BLAST of IVF0014867 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 184
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 184
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.0e-71
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 184
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.8e-42
Identity = 105/164 (64.02%), Postives = 119/164 (72.56%), Query Frame = 0


Query: 22  AGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQEL 81
           AG  TGN+ R LD V+RRKP KKTKQ NK   KPIKVVYISNPMKVQ SAS FMALVQ+L
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNK--NKPIKVVYISNPMKVQISASGFMALVQQL 64

Query: 82  TGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVPAE 141
           TGQDADFPDPS  PP+AV D AA  D ++NT +           ++N+NNPSL  ++P E
Sbjct: 65  TGQDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN--------LMNNNNPSLTVEIPME 124

Query: 142 DD-ILGSFYDDFDDLIFPPPVMGNLSGLLPGPVA-AVVYESNAR 184
           DD  LGSFYDD DDLIFPPPV+GN   LLP   A AV+YES AR
Sbjct: 125 DDPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of IVF0014867 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 349 bits (896), Expect = 4.74e-121
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MFFLTLSPFPLKNPFPPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY 60
           MF LTLSPFPLKNPF PSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY
Sbjct: 1   MFSLTLSPFPLKNPFSPSKMDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVY 60

Query: 61  ISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDD 120
           ISNPMKVQTSASEFMALVQELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDD
Sbjct: 61  ISNPMKVQTSASEFMALVQELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDD 120

Query: 121 GASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYES 180
           GASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYES
Sbjct: 121 GASNLIVNSNNPSLVDDVPAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYES 180

Query: 181 NAR 183
           NAR
Sbjct: 181 NAR 183

[Close]

BLAST of IVF0014867 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (820), Expect = 9.44e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 183
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (813), Expect = 1.10e-108
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSK PPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 183
           AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGP+AAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. NCBI nr
Match: XP_011653858.1 (sigma factor binding protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 277 bits (708), Expect = 1.11e-92
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 183
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 277 bits (708), Expect = 1.67e-92
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79
           MDAG ATG++ RTLDAVYRRKP KKTKQ   +LKKPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 80  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGGGDDDGASNLIVNSNNPSLVDDVP 139
           ELTGQDADFPDPSK PPSAVCD AASTDQLYNT+S GG+DDGA+NLIVNSNN SLVD+VP
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSGGEDDGATNLIVNSNNSSLVDEVP 120

Query: 140 AEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 183
           AEDDILGSFYDDFDDLIFP PV+GN SGLLP PVAAVVYESNAR
Sbjct: 121 AEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of IVF0014867 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 20 MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLK------KPIKVVYISNPMKVQTSASE 79
          M++ ++T     +LD   ++KP+  +++S K+ K      KPIKV YISNPM+VQT AS+
Sbjct: 1  MESSSSTFLTTTSLD---KKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASK 60

Query: 80 FMALVQELTGQDA-DF-PDPSKLPPS 98
          F  LVQELTGQDA D  P+P   P S
Sbjct: 61 FRELVQELTGQDAVDLQPEPIYSPSS 83

[Close]

BLAST of IVF0014867 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-07
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 44  KTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQELTGQDADFPDPSKLPPSAVCDDA 103
           K K+ +    KPIKV YISNPM+V+T  S+F  LVQELTGQDA     + LPPS     A
Sbjct: 25  KQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA-----ADLPPSPTTFTA 84

Query: 104 ASTDQLYNTVSGGGDDDGASNLIVNSNNP--SLVDDVPAEDDILGSFYDDFDDLIFPPPV 163
                                  V+ + P  S ++  P + ++ G +Y   D+ +F  P 
Sbjct: 85  -----------------------VDLHRPCESEMNLEPLDGEVRGEYYSPLDEEVFNAPQ 134

Query: 164 MGNLSGLLPGPVAAVVYESNA 183
           M   S  L G  ++  Y  NA
Sbjct: 145 M---SAGLSGFFSSGFYNVNA 134

The following BLAST results are available for this feature:

BLAST of IVF0014867 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	4.4e-07	47.67	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	2.2e-06	34.04	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of IVF0014867 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C276	1.9e-93	97.81	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	2.1e-84	100.00	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7SJV9	1.4e-83	98.78	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0L3J8	2.0e-71	86.59	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	5.8e-42	64.02	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of IVF0014867 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455708.1	4.74e-121	97.81	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
TYK04210.1	9.44e-110	100.00	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
KAA0025974.1	1.10e-108	98.78	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
XP_011653858.1	1.11e-92	86.59	sigma factor binding protein 2, chloroplastic [Cucumis sativus]	[more]
KAE8649682.1	1.67e-92	86.59	hypothetical protein Csa_012221 [Cucumis sativus]	[more]

BLAST of IVF0014867 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	3.1e-08	47.67	sigma factor binding protein 1	[more]
AT2G41180.1	1.6e-07	34.04	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 61..86 e-value: 1.2E-12 score: 47.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..51
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 37..174
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 37..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014867.1	IVF0014867.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity