IVF0014838 (gene) Melon (IVF77) v1

Overview


Name	IVF0014838
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transcription factor HBP-1b(C38)-like
Location	chr12: 3974599 .. 3977679 (+)
RNA-Seq Expression	IVF0014838
Synteny	IVF0014838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTACTCCCAACGCACAAAAACGTCGGAAAAAGTGAAAAAATCGTCGAGGAAGGATATGTTGACGTTTTTTGCGGTGTCAAGACCTACGTTGGGAAAACTGAGTCGAGAGAGGCATTCCCGACGAGTGAACAACACGGCATCGAGAATGCCTCTCTCGACGTCATGTGTCCTGATGTCGTCGACAGCGTCGGAAATGTAACGCCCCAAAAATTTAGATAATTTATTGGGCGTTATTTTGAATCCATTTAATGAGAATTATTTGATTTAGGTGGGAATTGAAATTAATTAAATATTTCTTGGATGAATATTTAATTAATTAGAGGTTTTGGCATGTGGTGTTTGTTAAGTTTTTTATTAGATGGTAAGTTAAGACAATTAAGTAAAGTTGTGGATTTTTAGTGTTGTTGAAGTTGAATTTAATTAAATAATTATGGATGTTATTTAATTAAATTGTCGGGTGGAAAGTTTGTTGGAGATTCAATAATTATATGTATATGTGGAAATATATATATAATTATTATGTTAAAGGAAAAGATAATTATATTTGTTGAAATATAATTATTTAAGGAAAAGATAGTTGTGTTTTGGAGAAAGGATATTTATTAAAGGAGAAAAAGTAAAATAATTATATTTTGGGAAAATATAATTATTTGTAAAAGGATAATTAATTACTTTGGAGAAAGATAAATAATAATTAATTATTGTGGAAGATAATTAATTATTTTGGAGGAAGATAAATAATAATTAATTATTGTGGAAGATAATTAATTATTTTGGAGAAAGATAAATAATAATTAATTATTGTAGAAAATAATTAATTATTTTGGAGAAAGATAAATAATAATTAATTATTTTGAGAAATAATTAATTATTCTGCAGAAAGATAAATCTTGATTATGGAGTGGAGTTGCTATGGTTGGGTTAAGATAATTAATGTTAGAAGTTATAAGTGATTTATTGGAAAAGATTTGATTGATTAAAAGAACTGAGGATTTAAGTTAATTTGAGATTTTGGAGGGAAAAGTTAGTTTTGGTGGAATTGTAATTAATTGAGTATATATATATGGATATATATATTTAATTAATAATATGGAAAAGTGAAGTTAATTATATGATGGAATATAATTATATTTGTTTGGAAAAGAAGATAATCCATAAGGAGAGAGATGGTTGATTTGATTGGACGAAAAAGATATATATTTATTTATAAGAGATGATAATGGTTTAAATAAATATATATTTATTGTAGATTTTGGTGTGAGAAAAATAATAATAATAAAGAAGTATTATTATTATTACTAATGGTTATAAATGCCTAAGATTAAGGCATTTATTTAGGAAAGATAATGGGAATAAAGATATATGTATATTTTTTTGGTATTATATATATATATATCCTAAAAGGAAAAGGAAAATGAAATAATAATAATAATTATTATTATTGTTATTATTTGGGTCTATAAATAGCATTGGAATGCTTAAGATGGAAATAAGGGAAAAAGAAAAAGGTTCTTTATCTTCTTCTCTAATATAACCCTCTGCTGTCGCCGCCATTGGTCTCTTTGGAAGCTTGATGATTTAAAGTGATGGATTTTTCATCAAGGATAAGAGGATTTTCCAACCTCCATTTGAGTAGCCTTGGTAAGCTAATGAAATTAAATTAATATTTTATTAATTTAATTTTGGATCTTTTTGGGGTTTCTTTAAAGGTTCAATTGGCTAAACTTTTTAAGATCTAAATCTTGGATTTTTCCCAATCAAGGTTGAATTGGTTTCAACCTCAATTTTTAGAAAGTTAATTAATTTGGGAGGATTTTTGGATGTTAGCCAATTGCTAATTTCATTTAATTAAGATACTAAGTTTTCCTTTTATGATTAGGATCAAGTTAATTGGAGAATTTTTACTGTCAACTAGGGAGTACCTTGTTTGGCTAAAATCTCCAGGTAAGAGATTCTCCTACTGGACCTTCGAACTGAATTCAAGAGACCGCATGTAATTATGATTATGCATTGATGGTAGCTAAAATGCATAATTTGATGATAATGATTATACTGAGATTATGATGATAGTTGATGTTGATGATGATGACTGAGATTATTATGTTGATGATTGATGATGATGACTGATGTTATGTTAATGACCGGTAGTATGTTATAGATTGATGTTGATGATTGTTAATGCATGATATATTAATCACATGATTAAGGACGTTAAGATTAATACTCATGTCATGTTATGATGTTATGTTATGCTACATGCTATGGATAGGGTGTTCTGTTAACTTTGTCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTAGGACTGTGTGGTCCGACGGGACGCCAGTCTAGCATGGATATAGATATGATTCGAGTGATTCGACGGGGTCCTCGCATCCCGATTGTCTTAGTGTTACCCCCGGGTTCACTACAGACCAGCATCTCCTAGGTGCTCCCCCGGGACACCGAAGACCAGATTTTCGTTCCTACGAGAGCGCATGTTGCACGTGTTCGGGAACGTGCCAGAGATTGGGTACCATTTTCAGGACTCTAATGGAAGTTAACAGACACCTAGCGGGACTAGTAGTAGGTCCCTTACTGAGTATATGTTTATACTCACTCTTTCTATGTTTAACATTTCAGGCGAAGGTAAAGGTAGAGGAAAGCTGGCGAGCGACAGAGAAGGATCCGTGACATGCCATATGGGGACTCAGTTTTGCTTCCGCGTTTATGTTTCAGTGTTTTAATATTCCTTTTTTTAATGAAAATTTAGTCTTCCCTCGTTTCAAAAAGGTGTCTCTTGTCATTGTTTCTCCTTAGTAACGACCTCAGCTTAGTATAAAAAGTTGGGTCGTTACAGGAAATACCTCTCCCAATGTTGTTTTTGGCGATGAAACCACCGGCGTTGGGAATACCTCTCTCGACTTCTTTTTTGCCGACTCATATCGTAGCGTCGAAAATGATATCTTCCGACGTTTTTGTGCATCCTATTGCCGACGTTTTGTTGCATCGAAAATTTCTTTTTATATGTATTTTTTTAAAACATGTAATTTTTAA

mRNA sequence

ATGGGAGTACTCCCAACGCACAAAAACGTCGGAAAAAGTGAAAAAATCGTCGAGGAAGGATATGTTGACGTTTTTTGCGGTGTCAAGACCTACGTTGGGAAAACTGAGTCGAGAGAGGCATTCCCGACGAGTGAACAACACGGCATCGAGAATGCCTCTCTCGACGTCATGTGTCCTGATGTCGTCGACAGCCTTAGTATAAAAAGTTGGGTCGTTACAGGAAATACCTCTCCCAATGTTGTTTTTGGCGATGAAACCACCGGCGTTGGGAATACCTCTCTCGACTTCTTTTTTGCCGACTCATATCGTAGCGTCGAAAATGATATCTTCCGACGTTTTTGTGCATCCTATTGCCGACGTTTTGTTGCATCGAAAATTTCTTTTTATATGTATTTTTTTAAAACATGTAATTTTTAA

Coding sequence (CDS)

ATGGGAGTACTCCCAACGCACAAAAACGTCGGAAAAAGTGAAAAAATCGTCGAGGAAGGATATGTTGACGTTTTTTGCGGTGTCAAGACCTACGTTGGGAAAACTGAGTCGAGAGAGGCATTCCCGACGAGTGAACAACACGGCATCGAGAATGCCTCTCTCGACGTCATGTGTCCTGATGTCGTCGACAGCCTTAGTATAAAAAGTTGGGTCGTTACAGGAAATACCTCTCCCAATGTTGTTTTTGGCGATGAAACCACCGGCGTTGGGAATACCTCTCTCGACTTCTTTTTTGCCGACTCATATCGTAGCGTCGAAAATGATATCTTCCGACGTTTTTGTGCATCCTATTGCCGACGTTTTGTTGCATCGAAAATTTCTTTTTATATGTATTTTTTTAAAACATGTAATTTTTAA

Protein sequence

MGVLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVVDSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSVENDIFRRFCASYCRRFVASKISFYMYFFKTCNF

Homology

[Close]

BLAST of IVF0014838 vs. ExPASy TrEMBL
Match: A0A5A7UKH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00210 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 7   HKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVVDSLS 66
           HKNVG+SEKIV +GY D+F GV ++VGK+E  EAF T +QHG+ NAS DV+  DV+D + 
Sbjct: 2   HKNVGESEKIVGKGYADIFRGVGSHVGKSELGEAFLTRDQHGVGNASSDVVFLDVIDDVK 61

Query: 67  IKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSVENDIFRRFCASY 118
           I       NTSP+ +FGDE T +G +S D  F+DSYRS+ ND FRRFCASY
Sbjct: 62  I-------NTSPDAIFGDEITSIGKSSPDVVFSDSYRSIGNDFFRRFCASY 105

[Close]

BLAST of IVF0014838 vs. ExPASy TrEMBL
Match: A0A5D3DSF9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00590 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 60/100 (60.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   GVLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDV 61
           GVL THKN+ +S+KIV EGYVDVFCGV  YV K ES EAF T EQHG+ NAS     PD 
Sbjct: 11  GVLSTHKNIEESKKIVGEGYVDVFCGVGPYVRKIESGEAFSTHEQHGVGNAS-----PDD 70

Query: 62  VDSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADS 102
           VD +        GNT P+ +FGD+TTG+GNTS D FFA+S
Sbjct: 71  VDGV--------GNTYPDAIFGDQTTGIGNTSPDVFFANS 97

[Close]

BLAST of IVF0014838 vs. ExPASy TrEMBL
Match: A0A5A7T5J5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00030 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 3   VLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVV 62
           VLPTHKN+ +SEKIV +GY DVF  V+ YVGKTES EA PT EQH + NAS DV+ PD V
Sbjct: 10  VLPTHKNIRESEKIVGKGYTDVFRWVRPYVGKTESGEASPTREQHSVGNASPDVVFPDDV 69

Query: 63  DSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSV 106
           D +         NTS + +FGDET GV N S D  F +SY SV
Sbjct: 70  DGVK--------NTSLDTLFGDETVGVENASPDVIFINSYGSV 104

[Close]

BLAST of IVF0014838 vs. ExPASy TrEMBL
Match: A0A5A7V224 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00470 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.7e-20
Identity = 61/104 (58.65%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 7   HKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVVDSLS 66
           HKNVG+SE IV +GY DVF  V   V K+ES EAF T EQHGI NAS DV+ PD V+   
Sbjct: 2   HKNVGESENIVRKGYTDVFRSVGPPVRKSESGEAFLTREQHGIGNASPDVVFPDAVE--- 61

Query: 67  IKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSVENDIF 111
                   NTS +VVFG+ETTGVG +S D  F DSYRSV ND F
Sbjct: 62  --------NTSLDVVFGNETTGVGKSSPDVVFFDSYRSVGNDFF 94

[Close]

BLAST of IVF0014838 vs. ExPASy TrEMBL
Match: A0A5A7VC74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00090 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.3e-17
Identity = 53/94 (56.38%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 2   GVLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDV 61
           GVLPTH       KIVE+GY D+FCGV  YVGKTES+EAFPT EQHGI NA  DV+ PD 
Sbjct: 119 GVLPTH-------KIVEKGYADIFCGVGPYVGKTESKEAFPTLEQHGIGNAYPDVVFPDD 178

Query: 62  VDSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLD 96
            D +         NTSPN V+ D T GV N + D
Sbjct: 179 ADGVE--------NTSPNPVYCDRTAGVRNVTPD 197

[Close]

BLAST of IVF0014838 vs. NCBI nr
Match: KAA0055548.1 (hypothetical protein E6C27_scaffold222G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 1.71e-35
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 7   HKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVVDSLS 66
           HKNVG+SEKIV +GY D+F GV ++VGK+E  EAF T +QHG+ NAS DV+  DV+D + 
Sbjct: 2   HKNVGESEKIVGKGYADIFRGVGSHVGKSELGEAFLTRDQHGVGNASSDVVFLDVIDDVK 61

Query: 67  IKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSVENDIFRRFCASY 117
           I       NTSP+ +FGDE T +G +S D  F+DSYRS+ ND FRRFCASY
Sbjct: 62  I-------NTSPDAIFGDEITSIGKSSPDVVFSDSYRSIGNDFFRRFCASY 105

[Close]

BLAST of IVF0014838 vs. NCBI nr
Match: KAA0067048.1 (hypothetical protein E6C27_scaffold38G00950 [Cucumis melo var. makuwa] >TYK26285.1 hypothetical protein E5676_scaffold14G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 3.32e-29
Identity = 60/100 (60.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 2   GVLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDV 61
           GVL THKN+ +S+KIV EGYVDVFCGV  YV K ES EAF T EQHG+ NAS     PD 
Sbjct: 11  GVLSTHKNIEESKKIVGEGYVDVFCGVGPYVRKIESGEAFSTHEQHGVGNAS-----PDD 70

Query: 62  VDSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADS 101
           VD +        GNT P+ +FGD+TTG+GNTS D FFA+S
Sbjct: 71  VDGV--------GNTYPDAIFGDQTTGIGNTSPDVFFANS 97

[Close]

BLAST of IVF0014838 vs. NCBI nr
Match: KAA0037416.1 (hypothetical protein E6C27_scaffold278G001280 [Cucumis melo var. makuwa] >TYJ97498.1 hypothetical protein E5676_scaffold85G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 2.54e-27
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 3   VLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVV 62
           VLPTHKN+ +SEKIV +GY DVF  V+ YVGKTES EA PT EQH + NAS DV+ PD V
Sbjct: 10  VLPTHKNIRESEKIVGKGYTDVFRWVRPYVGKTESGEASPTREQHSVGNASPDVVFPDDV 69

Query: 63  DSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSV 105
           D +         NTS + +FGDET GV N S D  F +SY SV
Sbjct: 70  DGVK--------NTSLDTLFGDETVGVENASPDVIFINSYGSV 104

[Close]

BLAST of IVF0014838 vs. NCBI nr
Match: KAA0060536.1 (hypothetical protein E6C27_scaffold22G003970 [Cucumis melo var. makuwa] >TYK00779.1 hypothetical protein E5676_scaffold420G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 3.83e-27
Identity = 61/104 (58.65%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 7   HKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDVVDSLS 66
           HKNVG+SE IV +GY DVF  V   V K+ES EAF T EQHGI NAS DV+ PD V+   
Sbjct: 2   HKNVGESENIVRKGYTDVFRSVGPPVRKSESGEAFLTREQHGIGNASPDVVFPDAVE--- 61

Query: 67  IKSWVVTGNTSPNVVFGDETTGVGNTSLDFFFADSYRSVENDIF 110
                   NTS +VVFG+ETTGVG +S D  F DSYRSV ND F
Sbjct: 62  --------NTSLDVVFGNETTGVGKSSPDVVFFDSYRSVGNDFF 94

[Close]

BLAST of IVF0014838 vs. NCBI nr
Match: KAA0063199.1 (hypothetical protein E6C27_scaffold205G00060 [Cucumis melo var. makuwa] >TYK23494.1 hypothetical protein E5676_scaffold2774G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 2.25e-21
Identity = 53/94 (56.38%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 2   GVLPTHKNVGKSEKIVEEGYVDVFCGVKTYVGKTESREAFPTSEQHGIENASLDVMCPDV 61
           GVLPTHK       IVE+GY D+FCGV  YVGKTES+EAFPT EQHGI NA  DV+ PD 
Sbjct: 119 GVLPTHK-------IVEKGYADIFCGVGPYVGKTESKEAFPTLEQHGIGNAYPDVVFPDD 178

Query: 62  VDSLSIKSWVVTGNTSPNVVFGDETTGVGNTSLD 95
            D +         NTSPN V+ D T GV N + D
Sbjct: 179 ADGVE--------NTSPNPVYCDRTAGVRNVTPD 197

The following BLAST results are available for this feature:

BLAST of IVF0014838 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014838 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKH4	1.1e-26	57.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DSF9	1.1e-21	60.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5J5	2.1e-20	57.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V224	4.7e-20	58.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VC74	6.3e-17	56.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0014838 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055548.1	1.71e-35	57.66	hypothetical protein E6C27_scaffold222G00210 [Cucumis melo var. makuwa]	[more]
KAA0067048.1	3.32e-29	60.00	hypothetical protein E6C27_scaffold38G00950 [Cucumis melo var. makuwa] >TYK26285...	[more]
KAA0037416.1	2.54e-27	57.28	hypothetical protein E6C27_scaffold278G001280 [Cucumis melo var. makuwa] >TYJ974...	[more]
KAA0060536.1	3.83e-27	58.65	hypothetical protein E6C27_scaffold22G003970 [Cucumis melo var. makuwa] >TYK0077...	[more]
KAA0063199.1	2.25e-21	56.38	hypothetical protein E6C27_scaffold205G00060 [Cucumis melo var. makuwa] >TYK2349...	[more]

BLAST of IVF0014838 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014838.1	IVF0014838.1	mRNA