IVF0014409 (gene) Melon (IVF77) v1

Overview
NameIVF0014409
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPol protein
Locationchr04: 21552249 .. 21552428 (-)
RNA-Seq ExpressionIVF0014409
SyntenyIVF0014409
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACTGAGGGCGGTTGGGTCGGCAGACACGGTCGGACGAAGGACACACGGTGGCGACTGGTTGCGTGAGACCGAGAGGAAGATCGAAAATGGGGCGACCGCGACGGTTGTACGCTGGCGTTGTGAAACTGACGACGACGGAGATGGACGAGTTTGCGAGCGGAAGAGAAATGGATGA

mRNA sequence

ATGCGACTGAGGGCGGTTGGGTCGGCAGACACGGTCGGACGAAGGACACACGGTGGCGACTGGTTGCGTGAGACCGAGAGGAAGATCGAAAATGGGGCGACCGCGACGGTTGTACGCTGGCGTTGTGAAACTGACGACGACGGAGATGGACGAGTTTGCGAGCGGAAGAGAAATGGATGA

Coding sequence (CDS)

ATGCGACTGAGGGCGGTTGGGTCGGCAGACACGGTCGGACGAAGGACACACGGTGGCGACTGGTTGCGTGAGACCGAGAGGAAGATCGAAAATGGGGCGACCGCGACGGTTGTACGCTGGCGTTGTGAAACTGACGACGACGGAGATGGACGAGTTTGCGAGCGGAAGAGAAATGGATGA

Protein sequence

MRLRAVGSADTVGRRTHGGDWLRETERKIENGATATVVRWRCETDDDGDGRVCERKRNG
Homology
BLAST of IVF0014409 vs. ExPASy TrEMBL
Match: A0A5A7TDW4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G001050 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 8   SADTVGRRTHGGDWLRETERKIENGATA-TVVRWRCETDDDGDG 51
           SADTVGRRTHG   LRETER+ ENG TA T   W CET DDGDG
Sbjct: 345 SADTVGRRTHGDVRLRETEREFENGGTAVTTKSWSCETTDDGDG 388

BLAST of IVF0014409 vs. NCBI nr
Match: KAA0039625.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.72e-09
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 8   SADTVGRRTHGGDWLRETERKIENGATATVVR-WRCETDDDGDG 50
           SADTVGRRTHG   LRETER+ ENG TA   + W CET DDGDG
Sbjct: 345 SADTVGRRTHGDVRLRETEREFENGGTAVTTKSWSCETTDDGDG 388

BLAST of IVF0014409 vs. NCBI nr
Match: KAA0033260.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 7.01e-06
Identity = 32/57 (56.14%), Postives = 32/57 (56.14%), Query Frame = 0

Query: 1   MRLRAVGSADT---VGRRTHGG-------------DWLRETERKIENGATATVVRWR 41
           MR RA G   T    GR T  G             DWLRETERKIENGATATVVRWR
Sbjct: 748 MRQRAAGCRQTRSNEGRTTATGMKEMKAEVGWSAVDWLRETERKIENGATATVVRWR 804

BLAST of IVF0014409 vs. NCBI nr
Match: KAA0033818.1 (hypothetical protein E6C27_scaffold1735G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 1.33e-04
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 0

Query: 1  MRLRAV----GSADTVGRRTHGGDWLRETERKIENG 32
          +R  AV     SADT+GRRTH G WLRETER+I NG
Sbjct: 23 LRFNAVESDWASADTIGRRTHDGVWLRETEREIRNG 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TDW44.3e-0772.73Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G001050 P... [more]
Match NameE-valueIdentityDescription
KAA0039625.12.72e-0970.45pol protein [Cucumis melo var. makuwa][more]
KAA0033260.17.01e-0656.14gag/pol protein [Cucumis melo var. makuwa][more]
KAA0033818.11.33e-0463.89hypothetical protein E6C27_scaffold1735G00130 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0014409.1IVF0014409.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane