IVF0014210 (gene) Melon (IVF77) v1

Overview


Name	IVF0014210
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	PMD domain-containing protein
Location	chr03: 10176817 .. 10178101 (-)
RNA-Seq Expression	IVF0014210
Synteny	IVF0014210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAAATCTTTTCCACATATCAAACACCATCCAAATGACTTAATTATAGAGGAGTACAAAAATCTTTCAATCACTATATACTACAGTTTAGAAACTTTGAATCTAAAAAGATATATTAAACAGTATGTTATAAACTAAGAGTTAGTGTTAACAGATAGACAAAGATAAAGTAATATACAGATAGACATAAACAAAGATAGAGCACTAGAGAAAGATAGACAAATATAGATAAATATAGACAAAGATAGAAAAAATAAACCACTATACAGATAGACATTGACAAAGATGAACAAATATAGACAAAGATAGAACACTAGACATAAAAAAATATAAACAAATATATACAAATATAAACAAAAATAAAGCACTATACAGATAGACATTGACATTATTATTCACTTTTTTTCGTTCTTTATTTGTTTTTCTTCTGCCTTTCCTTTTGATTTGATTGCTTTAGCTGGTTGATGTTTGCTTTTTGCTCACTTTCTATTATGTCCATGGTTGGTTAGTCCATTATTTTGGCATGTATTATCCATTTCCAATAGAAGTTTGAGGTCCCAATATGGCTAACTTTTTCGACGAAGGCGGGTTTATTTATTTTGGAGAATATGAGGCATGAGAACTGATCCATTATGGTACATGAATTCAGTGGCACGCTAGCCTTCAGAACCAGAATAAACATGAACGCATGGCTAATACCTATGACTCATCGTTTCTACAGACTTCTTATTTCGTAAGCATGTGCTTCTGTTACTTGTCATCCCACTGTGAAAGTTTTTCGATCATAACATCATACAGTCCGTATCGATTTAAACGATAGTTTGGCTTTTACTAGGATATCTCTAATGATATAAGAGGCATGACACCTGCGATCACATTCGATAATATATTACATCAGTGGAGGATATGTACGAGGTGCAACTTTTTGTCTGAGTTATACTTGCTCGTCCTTTCATTAGAGCCTTGCAAACATGTGACGCAACAATTTAAAAATTGGTGGGCCACGAAGCACGAGACCTGTTTTGAGGTTAATAGACACCATTTGGTGAGCAAAGTCATTCCTCCTCTATTACAACCCAAACTACCCAAGAACCGTAGAAGCAACCTAGGTGGTAAACAAATTCGCTTGGTTGAGGTGATGGCTTCTACCCTCGAGGGAAAGGTGAAGAAGCATAAAGATGAGAGCGATAATAGCAAAAGCGATAGTTATTGGAAGAGACCTTTGAAGAAAACAAAAGTATCAGGTGATGATCTTAGCGGAAGGAACTGCTATGGGAATCCCTGA

mRNA sequence

GGTAAATCTTTTCCACATATCAAACACCATCCAAATGACTTAATTATAGAGGAGTACAAAAATCTTTCAATCACTATATACTACAGTTTAGAAACTTTGAATCTAAAAAGATATATTAAACAGTATGTTATAAACTAAGAGTTAGTGTTAACAGATAGACAAAGATAAAGTAATATACAGATAGACATAAACAAAGATAGAGCACTAGAGAAAGATAGACAAATATAGATAAATATAGACAAAGATAGAAAAAATAAACCACTATACAGATAGACATTGACAAAGATGAACAAATATAGACAAAGATAGAACACTAGACATAAAAAAATATAAACAAATATATACAAATATAAACAAAAATAAAGCACTATACAGATAGACATTGACATTATTATTCACTTTTTTTCGTTCTTTATTTGTTTTTCTTCTGCCTTTCCTTTTGATTTGATTGCTTTAGCTGGTTGATGTTTGCTTTTTGCTCACTTTCTATTATGTCCATGGTTGGTTAGTCCATTATTTTGGCATGTATTATCCATTTCCAATAGAAGTTTGAGGTCCCAATATGGCTAACTTTTTCGACGAAGGCGGGTTTATTTATTTTGGAGAATATGAGGCATGAGAACTGATCCATTATGGTACATGAATTCAGTGGCACGCTAGCCTTCAGAACCAGAATAAACATGAACGCATGGCTAATACCTATGACTCATCGTTTCTACAGACTTCTTATTTCGTAAGCATGTGCTTCTGTTACTTGTCATCCCACTGTGAAAGTTTTTCGATCATAACATCATACAGTCCGTATCGATTTAAACGATAGTTTGGCTTTTACTAGGATATCTCTAATGATATAAGAGGCATGACACCTGCGATCACATTCGATAATATATTACATCAGTGGAGGATATGTACGAGGTGCAACTTTTTGTCTGAGTTATACTTGCTCGTCCTTTCATTAGAGCCTTGCAAACATGTGACGCAACAATTTAAAAATTGGTGGGCCACGAAGCACGAGACCTGTTTTGAGGTTAATAGACACCATTTGGTGAGCAAAGTCATTCCTCCTCTATTACAACCCAAACTACCCAAGAACCGTAGAAGCAACCTAGGTGGTAAACAAATTCGCTTGGTTGAGGTGATGGCTTCTACCCTCGAGGGAAAGGTGAAGAAGCATAAAGATGAGAGCGATAATAGCAAAAGCGATAGTTATTGGAAGAGACCTTTGAAGAAAACAAAAGTATCAGGTGATGATCTTAGCGGAAGGAACTGCTATGGGAATCCCTGA

Coding sequence (CDS)

ATGACACCTGCGATCACATTCGATAATATATTACATCAGTGGAGGATATGTACGAGGTGCAACTTTTTGTCTGAGTTATACTTGCTCGTCCTTTCATTAGAGCCTTGCAAACATGTGACGCAACAATTTAAAAATTGGTGGGCCACGAAGCACGAGACCTGTTTTGAGGTTAATAGACACCATTTGGTGAGCAAAGTCATTCCTCCTCTATTACAACCCAAACTACCCAAGAACCGTAGAAGCAACCTAGGTGGTAAACAAATTCGCTTGGTTGAGGTGATGGCTTCTACCCTCGAGGGAAAGGTGAAGAAGCATAAAGATGAGAGCGATAATAGCAAAAGCGATAGTTATTGGAAGAGACCTTTGAAGAAAACAAAAGTATCAGGTGATGATCTTAGCGGAAGGAACTGCTATGGGAATCCCTGA

Protein sequence

MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRHHLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKRPLKKTKVSGDDLSGRNCYGNP

Homology

[Close]

BLAST of IVF0014210 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.2e-49
Identity = 100/135 (74.07%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRH
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLVS VIPP  QP+LPKNR SNLGGK+IRLVE MA  LE +VK+HKDESD+SKSD +WKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284

Query: 121 PLKKTKVSGDDLSGR 136
           PLKK KVSGD   GR
Sbjct: 285 PLKKAKVSGDHPDGR 299

[Close]

BLAST of IVF0014210 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 99/135 (73.33%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT DNIL+  RICTRCN LSELYL   SLEPCKHVTQQF +WW TKH T FE NRH
Sbjct: 512 MPPAITLDNILYHLRICTRCNTLSELYLPARSLEPCKHVTQQFTDWWTTKHGTYFEDNRH 571

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLV+ VIP   QP+LPKNR SNLGGK+IRLVE MA  LE +VK+HKDES+NSKSD +WKR
Sbjct: 572 HLVTSVIPSPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHWKR 631

Query: 121 PLKKTKVSGDDLSGR 136
           PLKK KVSGD  +GR
Sbjct: 632 PLKKAKVSGDHPNGR 646

[Close]

BLAST of IVF0014210 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.4e-48
Identity = 98/135 (72.59%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M+PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRH
Sbjct: 484 MSPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLVS  IPP  QP+LPKNR SNLGGK+IRLVE MA  LE +VK+ KDESD+SKSD +WKR
Sbjct: 544 HLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKR 603

Query: 121 PLKKTKVSGDDLSGR 136
           PLKK KVSGD   GR
Sbjct: 604 PLKKAKVSGDHPDGR 618

[Close]

BLAST of IVF0014210 vs. ExPASy TrEMBL
Match: A0A5D3CXA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003220 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.1e-48
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT +NIL+ WRICTR N LS+LYL   SLEPCKHVTQQF NWW T+H T FE NRH
Sbjct: 66  MPPAITLNNILYHWRICTRRNTLSKLYLAARSLEPCKHVTQQFTNWWTTRHGTYFEDNRH 125

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HL+S  IPP  QPKLPKNR SNLGGK+IRLVEVM   LE +VK+HKDESD+SKSD +WKR
Sbjct: 126 HLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDESDSSKSDRHWKR 185

Query: 121 PLKKTKVSGDDLSGR 136
           PLKK KVS D+  GR
Sbjct: 186 PLKKAKVSCDNPDGR 200

[Close]

BLAST of IVF0014210 vs. ExPASy TrEMBL
Match: A0A5A7TZN9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001160 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.7e-47
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT D+IL+ WRICTR N LSELYL   SLEPCKHVTQQF +WW T+H+T FE NRH
Sbjct: 358 MPPAITLDDILYHWRICTRHNTLSELYLPARSLEPCKHVTQQFTDWWTTRHKTYFEDNRH 417

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLVS VIPP  QP+L KNR SNLGGK+IRLVE MA  L+ +VKKHKDESD+SKS  +WKR
Sbjct: 418 HLVSSVIPPPSQPRLSKNRGSNLGGKEIRLVEAMAPNLKEEVKKHKDESDSSKSYRHWKR 477

Query: 121 PLKKTKVSGDDLSGR 136
           PLKK KVSGD   GR
Sbjct: 478 PLKKAKVSGDHPDGR 492

[Close]

BLAST of IVF0014210 vs. NCBI nr
Match: TYK16513.1 (hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (510), Expect = 6.48e-61
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT +NIL+ WRICTR N LS+LYL   SLEPCKHVTQQF NWW T+H T FE NRH
Sbjct: 66  MPPAITLNNILYHWRICTRRNTLSKLYLAARSLEPCKHVTQQFTNWWTTRHGTYFEDNRH 125

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HL+S  IPP  QPKLPKNR SNLGGK+IRLVEVM   LE +VK+HKDESD+SKSD +WKR
Sbjct: 126 HLMSSAIPPPSQPKLPKNRGSNLGGKKIRLVEVMTPNLEEEVKEHKDESDSSKSDRHWKR 185

Query: 121 PLKKTKVSGDDLSGR 135
           PLKK KVS D+  GR
Sbjct: 186 PLKKAKVSCDNPDGR 200

[Close]

BLAST of IVF0014210 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (523), Expect = 4.87e-60
Identity = 100/135 (74.07%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRH
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLVS VIPP  QP+LPKNR SNLGGK+IRLVE MA  LE +VK+HKDESD+SKSD +WKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284

Query: 121 PLKKTKVSGDDLSGR 135
           PLKK KVSGD   GR
Sbjct: 285 PLKKAKVSGDHPDGR 299

[Close]

BLAST of IVF0014210 vs. NCBI nr
Match: KAA0054204.1 (hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa] >TYK15059.1 hypothetical protein E5676_scaffold45G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (497), Expect = 8.37e-58
Identity = 97/135 (71.85%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAI  +NIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRH
Sbjct: 100 MPPAIALNNILYHWRICTRRNTLSELYLPAHSLEPCKHVTQRFIDWWTTKHGTYFEDNRH 159

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLVS VIPP  QP+LPKNR SNLGGK+IRLVE M   LE +VK+HKDESDNSKSD + KR
Sbjct: 160 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMTPNLEEEVKEHKDESDNSKSDRHSKR 219

Query: 121 PLKKTKVSGDDLSGR 135
           PLKK KVSGD   GR
Sbjct: 220 PLKKAKVSGDHPDGR 234

[Close]

BLAST of IVF0014210 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 1.03e-57
Identity = 99/135 (73.33%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M PAIT DNIL+  RICTRCN LSELYL   SLEPCKHVTQQF +WW TKH T FE NRH
Sbjct: 512 MPPAITLDNILYHLRICTRCNTLSELYLPARSLEPCKHVTQQFTDWWTTKHGTYFEDNRH 571

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLV+ VIP   QP+LPKNR SNLGGK+IRLVE MA  LE +VK+HKDES+NSKSD +WKR
Sbjct: 572 HLVTSVIPSPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHWKR 631

Query: 121 PLKKTKVSGDDLSGR 135
           PLKK KVSGD  +GR
Sbjct: 632 PLKKAKVSGDHPNGR 646

[Close]

BLAST of IVF0014210 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 202 bits (514), Expect = 1.97e-57
Identity = 98/135 (72.59%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MTPAITFDNILHQWRICTRCNFLSELYLLVLSLEPCKHVTQQFKNWWATKHETCFEVNRH 60
           M+PAIT DNIL+ WRICTR N LSELYL   SLEPCKHVTQ+F +WW TKH T FE NRH
Sbjct: 484 MSPAITLDNILYHWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 543

Query: 61  HLVSKVIPPLLQPKLPKNRRSNLGGKQIRLVEVMASTLEGKVKKHKDESDNSKSDSYWKR 120
           HLVS  IPP  QP+LPKNR SNLGGK+IRLVE MA  LE +VK+ KDESD+SKSD +WKR
Sbjct: 544 HLVSSAIPPSSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKERKDESDSSKSDRHWKR 603

Query: 121 PLKKTKVSGDDLSGR 135
           PLKK KVSGD   GR
Sbjct: 604 PLKKAKVSGDHPDGR 618

The following BLAST results are available for this feature:

BLAST of IVF0014210 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQC9	2.2e-49	74.07	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U8L3	1.4e-48	73.33	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TX42	2.4e-48	72.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CXA5	7.1e-48	71.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZN9	2.7e-47	71.85	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of IVF0014210 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16513.1	6.48e-61	71.85	hypothetical protein E5676_scaffold21G003220 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	4.87e-60	74.07	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0054204.1	8.37e-58	71.85	hypothetical protein E6C27_scaffold131G001410 [Cucumis melo var. makuwa] >TYK150...	[more]
KAA0050516.1	1.03e-57	73.33	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	1.97e-57	72.59	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0014210 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014210.1	IVF0014210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane