IVF0014190 (gene) Melon (IVF77) v1

Overview


Name	IVF0014190
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Transposon Ty3-G Gag-Pol polyprotein
Location	chr08: 20620034 .. 20620384 (-)
RNA-Seq Expression	IVF0014190
Synteny	IVF0014190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTCCCATCGATGATAAAAACTACACCGTAATAAAGTCCTTTGGGTGGGTCTATTTCAAGGAAGAAGTATATGAAGAACTGTTCAGCACTAAAGAATTCTTTGAAGAAGAGGACCCAAATTATATACTAGAAGAAGAGAACGCCATGTCTGGCGAAAGGAAGTTTGAATCTTTGGACTTGCAAATCAAAGGCAAAAAAAAGATAAAGCCATCAATTGAAGAAACACTAGAGCTAGAGCTCAAGCCTTTACCCACCCACCTGAAGTATACATATTTGGGGGAGAATGACACTGTCCATCATTATCTCTGCCCACTTGGATGCCACAGAGGAGAAGGCGTTATTTAA

mRNA sequence

ATGAAGTTTCCCATCGATGATAAAAACTACACCGTAATAAAGTCCTTTGGGTGGGTCTATTTCAAGGAAGAAGTATATGAAGAACTGTTCAGCACTAAAGAATTCTTTGAAGAAGAGGACCCAAATTATATACTAGAAGAAGAGAACGCCATGTCTGGCGAAAGGAAGTTTGAATCTTTGGACTTGCAAATCAAAGGCAAAAAAAAGATAAAGCCATCAATTGAAGAAACACTAGAGCTAGAGCTCAAGCCTTTACCCACCCACCTGAAGTATACATATTTGGGGGAGAATGACACTGTCCATCATTATCTCTGCCCACTTGGATGCCACAGAGGAGAAGGCGTTATTTAA

Coding sequence (CDS)

ATGAAGTTTCCCATCGATGATAAAAACTACACCGTAATAAAGTCCTTTGGGTGGGTCTATTTCAAGGAAGAAGTATATGAAGAACTGTTCAGCACTAAAGAATTCTTTGAAGAAGAGGACCCAAATTATATACTAGAAGAAGAGAACGCCATGTCTGGCGAAAGGAAGTTTGAATCTTTGGACTTGCAAATCAAAGGCAAAAAAAAGATAAAGCCATCAATTGAAGAAACACTAGAGCTAGAGCTCAAGCCTTTACCCACCCACCTGAAGTATACATATTTGGGGGAGAATGACACTGTCCATCATTATCTCTGCCCACTTGGATGCCACAGAGGAGAAGGCGTTATTTAA

Protein sequence

MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESLDLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI

Homology

[Close]

BLAST of IVF0014190 vs. ExPASy TrEMBL
Match: A0A5D3C2R8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G002090 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.9e-60
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 60
           MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL
Sbjct: 44  MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 103

Query: 61  DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI 117
           DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI
Sbjct: 104 DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI 159

[Close]

BLAST of IVF0014190 vs. ExPASy TrEMBL
Match: A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 60
           MKFP +D  Y  I+S GW Y KEE Y ELFST+EFFEEEDP+YILEE N M G+ KFESL
Sbjct: 91  MKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYILEEVNVMLGKTKFESL 150

Query: 61  DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVH 102
           DL+ KGKKKIK SIEE  E+ELKPLP HLKY YLGENDT++
Sbjct: 151 DLKTKGKKKIKSSIEEPPEIELKPLPNHLKYAYLGENDTLY 191

[Close]

BLAST of IVF0014190 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 3   FPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESLDL 62
           FP DD+N  VI+  GW YF++E Y+ELFST+EFFEE+DP+YIL+E N +S E+KFESLDL
Sbjct: 150 FPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDPSYILKEVNVVSSEKKFESLDL 209

Query: 63  QIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTV 101
           QIKG+KK KPSIEE  ELELK LP HLKY YL ENDT+
Sbjct: 210 QIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTL 247

[Close]

BLAST of IVF0014190 vs. ExPASy TrEMBL
Match: A0A5A7TL87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2741G00320 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.9e-29
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 60
           MKFPIDDKNYTVIKSFGWVYFKE VYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL
Sbjct: 162 MKFPIDDKNYTVIKSFGWVYFKEGVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 221

Query: 61  DLQIKGKKK 70
           DLQIKGKKK
Sbjct: 222 DLQIKGKKK 230

[Close]

BLAST of IVF0014190 vs. ExPASy TrEMBL
Match: A0A5A7T4Y2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001390 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.6e-24
Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 2   KFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESLD 61
           +FP DD+ Y+ I+S  W Y +EEVY ELF+T+EFFEEED +YIL+E N +SGER FESLD
Sbjct: 113 EFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESLD 172

Query: 62  LQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTV 101
           LQ KGKKK KPSIEE  +LELK LP HLK    G+ DT+
Sbjct: 173 LQTKGKKKTKPSIEEPPKLELKHLPNHLKLEE-GQEDTI 210

[Close]

BLAST of IVF0014190 vs. NCBI nr
Match: TYK05498.1 (uncharacterized protein E5676_scaffold83G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (608), Expect = 1.08e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 60
           MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL
Sbjct: 44  MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 103

Query: 61  DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI 116
           DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI
Sbjct: 104 DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVHHYLCPLGCHRGEGVI 159

[Close]

BLAST of IVF0014190 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 4.86e-40
Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 60
           MKFP +D  Y  I+S GW Y KEE Y ELFST+EFFEEEDP+YILEE N M G+ KFESL
Sbjct: 91  MKFPANDVKYNAIESLGWDYCKEEPYHELFSTEEFFEEEDPSYILEEVNVMLGKTKFESL 150

Query: 61  DLQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTVH 101
           DL+ KGKKKIK SIEE  E+ELKPLP HLKY YLGENDT++
Sbjct: 151 DLKTKGKKKIKSSIEEPPEIELKPLPNHLKYAYLGENDTLY 191

[Close]

BLAST of IVF0014190 vs. NCBI nr
Match: KAA0044273.1 (uncharacterized protein E6C27_scaffold2741G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 7.23e-37
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1   MKFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 60
           MKFPIDDKNYTVIKSFGWVYFKE VYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL
Sbjct: 162 MKFPIDDKNYTVIKSFGWVYFKEGVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESL 221

Query: 61  DLQIKGKKK 69
           DLQIKGKKK
Sbjct: 222 DLQIKGKKK 230

[Close]

BLAST of IVF0014190 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (345), Expect = 1.15e-36
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 3   FPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESLDL 62
           FP DD+N  VI+  GW YF++E Y+ELFST+EFFEE+DP+YIL+E N +S E+KFESLDL
Sbjct: 150 FPTDDENCNVIEFLGWNYFEKEAYQELFSTEEFFEEDDPSYILKEVNVVSSEKKFESLDL 209

Query: 63  QIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTV 100
           QIKG+KK KPSIEE  ELELK LP HLKY YL ENDT+
Sbjct: 210 QIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDTL 247

[Close]

BLAST of IVF0014190 vs. NCBI nr
Match: KAA0038053.1 (uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK20551.1 uncharacterized protein E5676_scaffold237G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 4.95e-30
Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 2   KFPIDDKNYTVIKSFGWVYFKEEVYEELFSTKEFFEEEDPNYILEEENAMSGERKFESLD 61
           +FP DD+ Y+ I+S  W Y +EEVY ELF+T+EFFEEED +YIL+E N +SGER FESLD
Sbjct: 113 EFPTDDETYSAIESLRWDYCEEEVYHELFNTEEFFEEEDLSYILKEVNIVSGERNFESLD 172

Query: 62  LQIKGKKKIKPSIEETLELELKPLPTHLKYTYLGENDTV 100
           LQ KGKKK KPSIEE  +LELK LP HLK    G+ DT+
Sbjct: 173 LQTKGKKKTKPSIEEPPKLELKHLPNHLKLEE-GQEDTI 210

The following BLAST results are available for this feature:

BLAST of IVF0014190 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0014190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2R8	3.9e-60	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UE99	2.9e-31	71.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UF79	1.6e-29	69.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TL87	7.9e-29	98.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T4Y2	7.6e-24	63.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0014190 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05498.1	1.08e-78	100.00	uncharacterized protein E5676_scaffold83G002090 [Cucumis melo var. makuwa]	[more]
KAA0054122.1	4.86e-40	71.29	uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa]	[more]
KAA0044273.1	7.23e-37	98.55	uncharacterized protein E6C27_scaffold2741G00320 [Cucumis melo var. makuwa]	[more]
KAA0052866.1	1.15e-36	69.39	uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04...	[more]
KAA0038053.1	4.95e-30	63.64	uncharacterized protein E6C27_scaffold36G002560 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of IVF0014190 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0014190.2	IVF0014190.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity