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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACGTGTGACTCGACGGACGACGGTTGCACGTCAACGCAACCCAGCCACCGCCTTGCATCTCTCCCTCGCGTGATTGGAGCGCCTTGGCTTGCCAATGCTAGATCTGCCACCGTCGGCCGTCCATCTAATCAGACGACGGCCACTCCTTATGTGGTTTAA mRNA sequence ATGACGTGTGACTCGACGGACGACGGTTGCACGTCAACGCAACCCAGCCACCGCCTTGCATCTCTCCCTCGCGTGATTGGAGCGCCTTGGCTTGCCAATGCTAGATCTGCCACCGTCGGCCGTCCATCTAATCAGACGACGGCCACTCCTTATGTGGTTTAA Coding sequence (CDS) ATGACGTGTGACTCGACGGACGACGGTTGCACGTCAACGCAACCCAGCCACCGCCTTGCATCTCTCCCTCGCGTGATTGGAGCGCCTTGGCTTGCCAATGCTAGATCTGCCACCGTCGGCCGTCCATCTAATCAGACGACGGCCACTCCTTATGTGGTTTAA Protein sequence MTCDSTDDGCTSTQPSHRLASLPRVIGAPWLANARSATVGRPSNQTTATPYVV
Homology
BLAST of IVF0014100 vs. ExPASy TrEMBL
Match: A0A5D3DHF7 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00600 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13 Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query: 3 CDSTDDGCTSTQPSHRLASLPRVIGAPWLANARSATVGRPSNQTTATPYV 53
C+STDDGC S QP++RL SLP VIGAPWLA+ARS TVGRPSN+TTATP V
Sbjct: 623 CNSTDDGCRSMQPNNRLPSLPHVIGAPWLADARSTTVGRPSNRTTATPCV 672
BLAST of IVF0014100 vs. NCBI nr
Match: KAA0042458.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK22918.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 84.3 bits (207), Expect = 2.96e-17 Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0
Query: 3 CDSTDDGCTSTQPSHRLASLPRVIGAPWLANARSATVGRPSNQTTATPYV 52
C+STDDGC S QP++RL SLP VIGAPWLA+ARS TVGRPSN+TTATP V
Sbjct: 623 CNSTDDGCRSMQPNNRLPSLPHVIGAPWLADARSTTVGRPSNRTTATPCV 672
BLAST of IVF0014100 vs. NCBI nr
Match: KAA0053144.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK01548.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]) HSP 1 Score: 53.1 bits (126), Expect = 2.84e-06 Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query: 3 CDSTDDGCTSTQPSHRLASLPRVIGAPWLANARSATVGRP 42
C+STDDG T TQPS+R SLP VI A WL +ARS V P
Sbjct: 325 CNSTDDGYTLTQPSNRRTSLPHVIEASWLVDARSTAVAPP 364
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DHF7 | 3.6e-13 | 78.00 | Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0042458.1 | 2.96e-17 | 78.00 | putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... | [more] |
| KAA0053144.1 | 2.84e-06 | 62.50 | Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
|
