IVF0013775 (gene) Melon (IVF77) v1

Overview


Name	IVF0013775
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	chr05: 1054299 .. 1056218 (-)
RNA-Seq Expression	IVF0013775
Synteny	IVF0013775

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCAACAATATGAAACCTTCTTTCATCCTCTTTTCTTGTACAATTCTAAATTGAATTCTCAAAGTTTGAGTTTCTCACGATAGTTGAATCTTTGACCCAATCTCCTATTCTCTCCCACTTTTCCTTTATATTCATTTCATTCTCTTTCAATTCCTTTATTCCCACTCCATAAGTTCTCTCTCTCAACGGTTGGCTTTGTGATCTTGGAATCTTTTTTTTTCCAAAATGGTGGGAGCTTTGTTTGTTGTTGGTGCACCTGTGATCGACTCCCCGCCGCCGTGTTTTTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCTAAGACTAAGAGTTATTCAACCGTGTCTAAATCGGTGGATTTGAGAAGTTCGTTTGTTAATTTTGGTGACGAATGGCAGCTCTCGGCCGGTGGTTGCCGTCAGAGTCGGAGGAACCAACGAAGGAATCGGAGGCTTGTTATCGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGGTAGGGATATTATATCACTTTCTTCTTCCATGCAAAATGCTTTGATCCGTTTTCTAATCATTTGATTTTCGGTTTAATTTCCACAAACAAAAAACAAAAAGCCACCAAACGGCATGAATTGTTATCAAATACTTGTCTCTTCTCCTGCTTCCTTAATGATCAATGTTCTTTGCATAAAAAGGGAAGAAAAAACTATTTTAAGCTTACCAGAGGCTTTCTATTTGCAGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAAGTAAGTGAAGCCTTTCACTTTTAGTTTTTAAGAACTCATTATGACTGCCAATGTAAATGCTTATTCTGTGGAAATCAAAATAGTGGTTCCAGAACATTATTTCATTTCCCCATCTAATCTTGCATTTCACCTTTTTCTACATCAACAGCTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGTAATATACCAATTTCTAAAAGATTGTAAACCTAAACCTAAACATAACTCACTTGATTAAGACACAGTATCATCAACCAGCACATTAGGGGTTCAAATCCCCTATACATTCACATGCTGAACTCAAAAGGGAGGGAAAAAGAAGTCGAAAGAGTCTATTTGAATTACATGAAGGGTATGTAAATGATTGAGTACTGAAACAAATTGGATGATTACCAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAGAACAAACTTGGTATTTTGAGGGTTATTATTATTATTATTATTATTATATTGAATTGTGATTTGGTATTGTTGCATAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAGAGCTTTTAGGAGATTGGCAGACTAGGAGTTAGAAGATTTTTTTATCTTATTTATTTCCTTTAGTGTCGACCAATCTGGCCATGTTCCTAATTAGTTGTATTCACATTCATATTATTTTCCACCAACTAATAAGAATTCTTACATCCACTACTACAAAAAAATTCAATGTAAATACTTTCAACATGTTATACCATGTTAAAAGTATCAATCTCATTGAATATGTTCCTATAAACAAATGGCACTTTGGATATTAGTCCAACCGTTTCATATCTGTTGTACTTGCAGTAACCAAACCTCACAAGATATCCCATTGTGTGCTAATCTAGGTATGATTCTATCGGTTTAGGCCTAAACCTTTGACTAAAAGGTCATAGGT

mRNA sequence

CTTCCAACAATATGAAACCTTCTTTCATCCTCTTTTCTTGTACAATTCTAAATTGAATTCTCAAAGTTTGAGTTTCTCACGATAGTTGAATCTTTGACCCAATCTCCTATTCTCTCCCACTTTTCCTTTATATTCATTTCATTCTCTTTCAATTCCTTTATTCCCACTCCATAAGTTCTCTCTCTCAACGGTTGGCTTTGTGATCTTGGAATCTTTTTTTTTCCAAAATGGTGGGAGCTTTGTTTGTTGTTGGTGCACCTGTGATCGACTCCCCGCCGCCGTGTTTTTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCTAAGACTAAGAGTTATTCAACCGTGTCTAAATCGGTGGATTTGAGAAGTTCGTTTGTTAATTTTGGTGACGAATGGCAGCTCTCGGCCGGTGGTTGCCGTCAGAGTCGGAGGAACCAACGAAGGAATCGGAGGCTTGTTATCGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAGAGCTTTTAGGAGATTGGCAGACTAGGAGTTAGAAGATTTTTTTATCTTATTTATTTCCTTTAGTGTCGACCAATCTGGCCATGTTCCTAATTAGTTGTATTCACATTCATATTATTTTCCACCAACTAATAAGAATTCTTACATCCACTACTACAAAAAAATTCAATGTAAATACTTTCAACATGTTATACCATGTTAAAAGTATCAATCTCATTGAATATGTTCCTATAAACAAATGGCACTTTGGATATTAGTCCAACCGTTTCATATCTGTTGTACTTGCAGTAACCAAACCTCACAAGATATCCCATTGTGTGCTAATCTAGGTATGATTCTATCGGTTTAGGCCTAAACCTTTGACTAAAAGGTCATAGGT

Coding sequence (CDS)

ATGGTGGGAGCTTTGTTTGTTGTTGGTGCACCTGTGATCGACTCCCCGCCGCCGTGTTTTTCTTTCGACTCGTCGCCGGTTACCAATATGAGTCTTAGAAGTGGTGGGGATTTGGTTTTGCAAAGGAAATCTAAGACTAAGAGTTATTCAACCGTGTCTAAATCGGTGGATTTGAGAAGTTCGTTTGTTAATTTTGGTGACGAATGGCAGCTCTCGGCCGGTGGTTGCCGTCAGAGTCGGAGGAACCAACGAAGGAATCGGAGGCTTGTTATCGTCAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTGAAAATGCAAATACAGAATTATTTCACATACAAAGCTGTGAAGACAGTTTTGAATCAGCTTTATGAGATGAACCCAACACAGTACAGATGGTTTTATAACTTTGTTGTAAATCACAAGCCTGGGGAAGGGAAGCGTTTCATTCGAACTCTTGTAAAGGAGAAGCAAGATTTGGCTGAGAGGGTGATGATAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGAGGCTAATGGAGACTGTGATATGGCCTTCCGACGACTAG

Protein sequence

MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRSSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVKKCDHAEIYKEISDENLELMRERLMETVIWPSDD

Homology

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BLAST of IVF0013775 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.5e-56
Identity = 119/214 (55.61%), Postives = 152/214 (71.03%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MV A FVVG+PV+DS        SSP   +   + G +      + K     +++++L S
Sbjct: 1   MVSAWFVVGSPVMDS-------SSSPCLCLDAHTTGTI------RRKKILGKARNLELGS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNE-FAGQYEDSFDDVKMQIQNYFTYKAV 120
           SF      ++LS    R SR   R++++L+IVNE  AG Y+D+F DV+ QI NYFTYKAV
Sbjct: 61  SFTGSRIVFRLSPK--RVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           +TVL+QLYEMNP QY WFYN ++ ++P +GKRF+R L KE Q+LAERVMITRLHLY KW+
Sbjct: 121 RTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWI 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KKCDH +IY+EISDENL LMRERLMETVIWPSDD
Sbjct: 181 KKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

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BLAST of IVF0013775 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLA 164
           D    +Q+Y TY+A++TVL QL E NP    W +NF    K  +G+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 165 ERVMITRLHLYNKWVKKCDHAEIYKEISDENLELMRERL 204
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-IAEFLPEMVVTGIQQANMEKRRQHL 105

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BLAST of IVF0013775 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 105 DVKMQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLA 164
           D    +Q+Y TY+A+ TVL QL E NP    W + F V  K  +G+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 165 ERVMITRLHLYNKWVKKCDHAEIYKEISDENLELMRERL 204
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-VAEFLPEMVRSGIQQANMEQRRQHL 105

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BLAST of IVF0013775 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-06
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 112 NYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITR 171
           +Y TY+AV+TV+ QL E +P +  W + F       +G+R++  L +E+ DL  R++  R
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVR 75

Query: 172 LHL 175
            HL
Sbjct: 76  EHL 78

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BLAST of IVF0013775 vs. ExPASy TrEMBL
Match: A0A5D3BAI6 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001050 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.2e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

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BLAST of IVF0013775 vs. ExPASy TrEMBL
Match: A0A1S3BNA7 (uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.2e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

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BLAST of IVF0013775 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 6.3e-117
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNFGDEWQLSAGGCR+SRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of IVF0013775 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.9e-111
Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG RQS+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of IVF0013775 vs. ExPASy TrEMBL
Match: A0A6J1FUS7 (chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448989 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 186/214 (86.92%), Postives = 194/214 (90.65%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLR 60
           MVGAL V GAPVIDSPP PC   DSSPVTNMSLRS GDLVL R+SK KS+  VS+ VDLR
Sbjct: 1   MVGALCVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120
           SSFVN G EWQLSA G  + RRNQRRNRRLV+VNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of IVF0013775 vs. NCBI nr
Match: XP_008449714.1 (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 432 bits (1111), Expect = 7.73e-153
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213
           KCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of IVF0013775 vs. NCBI nr
Match: KAA0041415.1 (RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 431 bits (1107), Expect = 3.15e-152
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVNFGDEWQLSAGGCR+SRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNFGDEWQLSAGGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213
           KCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of IVF0013775 vs. NCBI nr
Match: XP_004142113.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypothetical protein Csa_018190 [Cucumis sativus])

HSP 1 Score: 410 bits (1054), Expect = 3.80e-144
Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MVGALFVVGAPV+DS PPC SFDSSPVTNMSLRSGGDLVLQRKSK KSY TVSKSVDLRS
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120
           SFVN GDEWQLSAGG RQS+RNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAVK
Sbjct: 61  SFVNLGDEWQLSAGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAVK 120

Query: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180
           TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK
Sbjct: 121 TVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWVK 180

Query: 181 KCDHAEIYKEISDENLELMRERLMETVIWPSDD 213
           KCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of IVF0013775 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373 bits (957), Expect = 2.68e-129
Identity = 187/214 (87.38%), Postives = 195/214 (91.12%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLR 60
           MVGALFV GAPVIDSPP PC   DSSPVTNMSLRS GDLVL R+SK KS+  VS+ VDLR
Sbjct: 1   MVGALFVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120
           SSFVN G EWQLSA G  + RRNQRRNRRLV+VNEFAGQYE+SFDDVKMQI NYFTYKAV
Sbjct: 61  SSFVNSGSEWQLSASGGHRRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFY+FVVNHKP +GKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213
           KKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

[Close]

BLAST of IVF0013775 vs. NCBI nr
Match: XP_038902700.1 (chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 371 bits (953), Expect = 8.80e-129
Identity = 190/214 (88.79%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPP-PCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLR 60
           MVGALFVVGAPV+DSPP P    DSSPVT  SLRSGGDLVLQRKS   S+  VSKSVDLR
Sbjct: 1   MVGALFVVGAPVVDSPPCPSLCSDSSPVTITSLRSGGDLVLQRKS---SHLAVSKSVDLR 60

Query: 61  SSFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120
           SSFVN   EW+LSA G  +SRRNQRRNRRLV+VNEFAGQYEDSFDDVKMQIQNYFTYKAV
Sbjct: 61  SSFVNSAGEWRLSASGGNRSRRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213
           KKCDHAE+YKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEMYKEISDENLELMRERLMETVIWPSDD 211

[Close]

BLAST of IVF0013775 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-57
Identity = 119/214 (55.61%), Postives = 152/214 (71.03%), Query Frame = 0


Query: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60
           MV A FVVG+PV+DS        SSP   +   + G +      + K     +++++L S
Sbjct: 1   MVSAWFVVGSPVMDS-------SSSPCLCLDAHTTGTI------RRKKILGKARNLELGS 60

Query: 61  SFVNFGDEWQLSAGGCRQSRRNQRRNRRLVIVNE-FAGQYEDSFDDVKMQIQNYFTYKAV 120
           SF      ++LS    R SR   R++++L+IVNE  AG Y+D+F DV+ QI NYFTYKAV
Sbjct: 61  SFTGSRIVFRLSPK--RVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180
           +TVL+QLYEMNP QY WFYN ++ ++P +GKRF+R L KE Q+LAERVMITRLHLY KW+
Sbjct: 121 RTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWI 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214
           KKCDH +IY+EISDENL LMRERLMETVIWPSDD
Sbjct: 181 KKCDHGKIYQEISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of IVF0013775 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	3.5e-56	55.61	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	2.3e-07	35.35	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	1.1e-06	34.34	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q8DIS6	4.4e-06	36.51	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]

BLAST of IVF0013775 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAI6	2.2e-117	100.00	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BNA7	2.2e-117	100.00	uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=...	[more]
A0A5A7TJ10	6.3e-117	99.53	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KX19	8.9e-111	95.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A6J1FUS7	1.3e-98	86.92	chaperonin-like RbcX protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of IVF0013775 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449714.1	7.73e-153	100.00	PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX ...	[more]
KAA0041415.1	3.15e-152	99.53	RcbX domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_004142113.1	3.80e-144	95.31	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypo...	[more]
XP_023512052.1	2.68e-129	87.38	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038902700.1	8.80e-129	88.79	chaperonin-like RbcX protein 2, chloroplastic [Benincasa hispida]	[more]

BLAST of IVF0013775 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	2.5e-57	55.61	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 108..206 e-value: 3.9E-20 score: 72.2
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..213
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 92..213 e-value: 1.3E-47 score: 162.7
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 98..213
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013775.3	IVF0013775.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone