IVF0013681 (gene) Melon (IVF77) v1

Overview


Name	IVF0013681
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 17080262 .. 17080429 (-)
RNA-Seq Expression	IVF0013681
Synteny	IVF0013681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGAGGACGTTGACGACATGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCACTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACTTAGCCGAATTGATGTTCACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA

Homology

[Close]

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5A7U6D8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00620 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 242 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 296

[Close]

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5D3C8Z4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00530 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 235 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 289

[Close]

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5A7VK86 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001570 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDD+DEGDSTYATTTASEDIHYIETTNEWSQWRD+L E MFTDWQL NA
Sbjct: 246 MTYCEDVDDVDEGDSTYATTTASEDIHYIETTNEWSQWRDELVESMFTDWQLHNA 300

[Close]

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5D3BDZ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00280 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
          MTYC+D+DD+DEGDS YATTTASEDIHYIETTNEWSQWRD+LAE MFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0013681 vs. ExPASy TrEMBL
Match: A0A5A7SL78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00920 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 56
           MTYCEDVDD DEGDSTYATTTASEDI YIETTNEWSQWRDDL ELMFT+WQLRNA
Sbjct: 175 MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLTELMFTEWQLRNA 229

[Close]

BLAST of IVF0013681 vs. NCBI nr
Match: TYK07648.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 6.70e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 235 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 289

[Close]

BLAST of IVF0013681 vs. NCBI nr
Match: KAA0049907.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 7.75e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA
Sbjct: 242 MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 296

[Close]

BLAST of IVF0013681 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 4.37e-30
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 1  MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
          MTYC+D+DD+DEGDS YATTTASEDIHYIETTNEWSQWRD+LAE MFTDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

[Close]

BLAST of IVF0013681 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 2.64e-29
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYCEDVDD DEGDSTYATTTASEDI YIETTNEWSQWRDDLAE MFTDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

[Close]

BLAST of IVF0013681 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 1.52e-28
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MTYCEDVDDMDEGDSTYATTTASEDIHYIETTNEWSQWRDDLAELMFTDWQLRNA 55
           MTYC+D+DD DEGDSTYATTTASEDI YIETTNEWSQWRDDLAE MFT+WQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

The following BLAST results are available for this feature:

BLAST of IVF0013681 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6D8	6.2e-24	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C8Z4	6.2e-24	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VK86	2.9e-21	90.91	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDZ0	2.9e-21	89.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SL78	2.9e-21	92.73	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0013681 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07648.1	6.70e-31	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049907.1	7.75e-31	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054051.1	4.37e-30	89.09	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p...	[more]
TYK05336.1	2.64e-29	92.73	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062284.1	1.52e-28	89.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013681 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013681.1	IVF0013681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding