IVF0013550 (gene) Melon (IVF77) v1

Overview


Name	IVF0013550
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein 7-like isoform X1
Location	chr09: 639521 .. 647575 (+)
RNA-Seq Expression	IVF0013550
Synteny	IVF0013550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAAGGTCAAATGGATGCACCATTTACGTTGGTAAGTTTGTTATTATTTCTATCTATCTTAATTCATGTTCTTTGTACTCTAATTTGTTTTTCTTGATTCTGTTTGCGGGTTAAGCTTCATGTTTTTTCTTCTGTGAAGCTTCTAATGAAAATTATGATCTTGAGTGGTTGGTTTTATAATAGTTGTGTTTATTTCTTTCTATTATGTTTTGCTATTGGATGTATATGCACATGGCATTTAACATGTTTATTGATTCTCTCACACTATTGGATTTCTTCCTCTCCAACCTTTTCCTATATTGTAAATATGTTTGATATCCCTTTGCATAATTGATTTAGTGCCTTTGGTGAAGAGAGTTGATAGTTAACTTATTTTCTTTTTTCTTTTCATTGATCTCTTAGATATTCTTCATTTTTGCTTTAAGTGGTACAATCTAAAATTTTCACTTTCACCATCGTCTTTGATCTACTTCTATGTGGGCTTTACCCATTTGAGTATTGCCGCCAGTTTGTCTGTAATATTTCTTTAACATAGCTGGTTGTTCGGTGAACTTACTTTTTTGGGAAACTTTTCTTCCCCGTTTATACTTGATACAATGTTATCTATTAAGTTTTAACGATGCAGCCTACTTGAATTTTAGATGCTACATATTCATCTGAATTTGATTTTGTTACTTTCTTCACCTTTTTTAGGTAATTTGGATGAAAGAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATGTCATTTTTATTTCCTTCTCAGTGAAAAAGTCTCATTTTATCTCCGTGTTTCTTGATGAACTTTGTCTTCTATTCAAACTTAGACGTTTGCATGTGTATATATTTGTTTTATGATCCAATATCATGTCGTACACCATCTCCTCTAATTTGATCCATTTTGCTCAGTAACTCACGTGTTGATCTATATAGAGTCTATTGAAATGTGTGGTGCATTTGAATTTTTTGACCTTTTGTTTTATCTTTAAATTTAATCAATTAAAAAACCAAGCCTACGAAAAGAGGAAGCTCCCTCAACAAATAGAGATAGACTACAATCTCAATCTATAGATGGTTTCCTTTTGATACATTATTGTTTACTCCCAGTCTCATTCCAATTTTATAACCAGATAATTGTGTAATCTTCTTGTATCATCTTTGATTGTGAATTGTGCAGTGGGCTACTAAGTTACGGAAATGACACATTGTTTTTGACACTGTTCAAACAGGTATCTGGGCAAGACAAACCTTCACCTGTTAGCAATGCAATCACTTCATCATCAAGGTCGCAGATTGTTTCAGGTTACTCTAATGAAATATCTCAGTATACCAATCGCTTTTCCTCATCTTGCAGGTTTCCAACATATCCCGAGAACCATCTTGAAGGTGATTTTTCTTACTTTTCTTTATTTTTGTCTTTGTGTTAGTTTGCTAAGAAATTGTGTATTTGTACTTTATTTGCCTTTTCCACGTAGTTCAACGAACTTTTATTTCTTTTATTCAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCAGTAGATTATCCTCCTTACTAACTTTTGAACTAATGCAGCCAGTGCCGTGGTTAATCTTAATGGTAATATAAGTCTTAGGAAAAGTTGGACCACTTAGATGGTTGTAGAAGGTTTGGAGGAAAATGATACGATATTTGGCTATTTGCTATGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCAGGATTATGTGTTCATATGATTTGGCTATGTTGTGATAAACTTATAGTTGATACCCTAACTAAGTATTGTAATCTATTTGATTAAATATTCAGATATTCATGTTTAATGTTATTATAAACGATATTTCCAAGGTGACTGAAAAAGTTTGTGTATATTGAGTATTTACTTTCTTCTGAAGTGTTTTACTTGAGCCAATATATAACATACCATTTAGCATTTTGGTTTTAGCAAAGTGAAAGCTAAAATTACATGTAAAACCAGGAATTTTGGTTTACCATTTCTGCGTTTGGGTATGCCTGTACTGAAATTCATGGAAGGTTAAGTCGTATGTTATTGTCCAACTTTTATTGCATTTTTTAGACCTAGTTGATTTCATTACCTTTTGAATATATATGTTTAGTTTACCTTTGATTTTTAATAATCTAAAAATTCAAGAATCTAAAATACCCTCTCTTATTTGGGCTCAAAGTTCCTATTTGGAAATTGGAATTGCGAATTGTGAGTACAAATGTACAACAAGAGAGAGTGAGGATTTGAACCTCTAATCTCAAGGAAATGATACAACTCAATTACCATAGAGCCTTGTTTACTTTGTCCATTAGTTTTACTATTCTTTGTATCGTAATACGAATTTGTTCGTTTTCTTTTATTCTACCTTTGTATTGGTGTTGTGAAACCTGTATTTGATGTCTGTTTGTATGTATGATAAACGACCTATCTCAATTGCCTTGTAAGATTTGGCATAAGTTGATATAGTCAGTTTTAGTAAGCAAGTAGTGTTTTTAACTGAAATCCTTTTGTATGAAGCACTAGTGGAGAACAGAACTTCTGTTAAGTGTTCTGTTCAAAAGGGTTTGTTGTAGTACAGAAATAAAATCAGAATGAAAAGTGTGATATTGTACTGGATGGGATGAAGGCCCTCACTATCTTTGGTTGTAAAGGTTAAAATACTATGGTACACATGTTTACTTGTATGGAATACATATGTGATGTCATTGTTAAGGAGGATTTATGTACGATGTGATGAAAATACGGAGCTTGGAAATGAATGGTGAAAGAACAGAGAGTGTAGGAAGTGGTTGAAGTGTTTAGGGAAATTTGATTGATTCTCCAAACAATAAAATTCTTCCACGAGAGTTTGAGCCTGAGTTGATTATTATAGTTAATGGGTTATAATTATTAGTGCTTGGGGTGAGTTTGTGTTTGGTGTGTGATAGGAAATAGTAAGCACTACAACAAAGAAATGAGAGGATGAGTGGATGAGTGTAAATAGTAAATACGGTAACATATATGGTCTTAATTTTTTTTTTTAATATACTTAATTGTAGGATATAAGTAGTTGCACTTTACTTTTATATTTTGTGCTCCGAATATAGTGTAGGCTATAATAACCTATAAAACCAACTTCTAGTCGGTGCTCCAAACAACCCCTTGTTTATAATCCAACTTAACAAGACCCTTTTGAAGCTTTAGAGGTTTCATATTAGTATTAGCATATGTGGTTTGTTCCTCGATCACTTTTATGTCATCTTCCATGTAATTGTATTAGGATTGTTTAACAATCCAACTTCAATGGTAGCAACCGGAGCTGTTATTGGATAAACATGATTTATTGGATTACGAAGAAAATCTCGAGCTCATGTCGGTCATGAGTATGAGTTCAAGAAGCTTGGGCATTGAAGAAGATTTTATGAAGCTGTGTGTGTTTCCTATGTGTTGGTAATGTTGTACAATGGTTGCTAAAATATAGTTGGAGTTAGTTAAATATTTGTTCTTTTTTTCTCTCTAATTCAAATTCTTTCACTATGATGCAAACTCTGTTTGATAATTACTTAGATTTTTCTAAATTATGTTTGTTTACTTGCAATAGTTTATATTTTATAGTTGAACATTTAGAGTGTATTTAGTAGAGAAGCTAACATCAAAATTTGAAAACAAGGGATCAAATGAAGATAAAAGTTTTATATTATGTTCTTAGATATGTATTTGGTAGTAAATTTATAAATTGGATTTTGGTTTCAACAATAGTTTAAGATATGTTTGATAATAATTTATAAATCATAAAATTAGTTGCAATTATCAAATCATTAATTCAGGTATATTTTTAAAAATAGTAAATATTGAAATTATTTATAAAATATAGTAAAATTCATTAATCGTTTTAATTTTTTTTTTATAATTATTATTTTGCAATAACATATAGTTTTAAATACATATTTTAATTTTAAAAAATTTAACTGAGTTTATAACATAATTTAAATTAAAATCAACATATAATGAAAACATAAAGATATTATTTTCATAATTTGGTTCGTATTTTCAACTATTATATATAATTAATTATTATATTTCTACTGCAAATTTGTTTAGTCTCTATCTCTCATTTAGTATTTAGTATTCCCTATCTCTATTGAATTATGAACCCTAAACCCTAAATCAGATATCTCCAAATAATTCTTAACTTTTTTAGAATTAAAATTCTTTCTAATTTTTTTACTGCAAAAAATGACTTTCTTTTTTTTAGTACAATATATTGTGAGCAGAGACCTTTGAACTCGTTGACCTCTTAGTTTGTGATATTTGGTCAAGTTTGATTGAACAATCAAATTCTATAATTGATAATACAAAAACCCAAATTATTAAATTATTAAATTATTAAATTTATTTAATTTCAATTTGAAAAAGAGAGAAAAAAAAAAATTTAAAGTCAAAGGTCCAAAGTCCTATTTTTTCTCCGAATTGGTTCATTTATCCAAAACCAAAACCAAAACGTAGTGGGTTATATTTACGTATAAAAAATCTCCCCGCTAACTTCTCTCCCTCGTAGAGCTTCCAGCCGCTTCAAACCTCAGGCGACATCAGCGAATAAACCCACGCAATCGATTTCGAAGTACCGCTGTTTTCAAGCTTGGAGGTCTCTGCTTCCGGCGGCTGCACACGCTTCATTCGGCCCTCATACGGATTGCCCATATCCTCTTCTGTTCGATTTTGTGAAATTAAATACAATCAATTCACTTTTCGACTCTTTTTGGGTAAGATTTAGTGAGTATGGGCACTCTAAATTCCTTTCGAACAACTGCATTAGAATTATTCCCAGCATTTGAAAATTTAGATTAATTTGATATACTAATGGGAATTCGGAAATACGGTTGAAATACAAACCGCATTTGGAAAATCGAAATCGAAGCAATATAAATAGAGGTTTATTGGGTTACTTTCTTCTCCGTTTTCCTTTTTCTCTTTTATCCTTACCTTTTTGCTTTTTCAAATTTCGGTTTAGGCTTTTGCATTTGAACTTGCAGTACGACCATGTCAGGAGGGTCTAATTCATGCACCGTTTACGTTGGTATGTTTGTCTTTATTTCTATCCATCTTAAATCATGTTTGGATCTTTCGTTTTCCGTTCATGAGGATTCTGATTGCGTTTCATGCTTCATGTTTTTAATTTCTGTGAAGTTTTTCGTATGGAAATATGCTTTTAGGTGGATGGTTTTGTAATAGTTGTGTTGTGTTTATTTGTTTCTATTGTGCCATATTTATTGATTCTCTTACAAAGCCATGCTTATATTTTTAACGGCGGGTTCATAATTGAATAGAAAGTGTAATGGGGGAGTTTAGGAGGGAGACATGGATAAACAAAGATTATATTTGAATGAGAGAGAACCTGGGAACATAAAAGTATGGTTAAGAAAGATTTCTCCCTTCCCAACATTTTCCCTCTCTTATAAATTAATTTGATTTATGTTTATAGCATATTTGATTTGTTGCTTTTGGGTGAAAGAGGATTGGGGGTTGAACTTGTTTCGTTTTTGTTTTTCTTAGATTTCTTAGATTATCTTCGTTTTTTGCTTAACTGGTTTGATCTTAATTCTCATTTACCCAATCATTTTTATCTGTGTAGGCTTTACTCCATTTGAGTATTGTTGACAGTTGATTCTTTAATATGTCTTTAACATAACTAGATATTCAGCTAACTTATCCTTTTGGGGAACTATTCCTCCCCAATTTCCCCTTTCTTTAACATAACTATATATTTCTTTACTTCCGCAGTAGTCTTTAACATGACTATATATTTAGTTACTTTGATACAAGGTTATCAATTGAAGTGTTTAGGATGCAGCCTATCATTTTGAGTTTAAGATGCTGCATTTTCTTATGAGTTTGATTTTGTTACTTTCTTTACTTTCTGTAGGGAACTTGGACGAAAGGGTTAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGATAAGGATTCTGGTAAACCCAAAGGTTTTGCTTTTGCAGTATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGCCTCGTGTCTCTTCATAGCCGTATCCTGAAGTTTGCAGTATGTAACTGTTTAATTTTAGTATATTGCATGAATTTATTGAAGTTTTAGAAATTACATTCTAATTATATGGCTTTGTTCTCGTTATTAATTAAAAATCTAGTTTGCGTTTAGAAGCAAATCATGTTATCATACGGGAAGAACCAAGATATTCATGGATCATGATGAATTTACTCTAGTTTAGTTCATGTCACCAGAAGTTTAAATGACATGGTTGGAAAACCTTTGGCTTGCCAATTTTTATGGGATGAAACATGAGTATTAGTACATTATTGACAATAAGAAAAAAAAGAAAAAAAAAGAAAAAACTTTGGTTTCCCAATTTAAATTATAGATTATTTCTTTCATGTATTTTCATTTACTGTGTGGTTTCGTAGTTCAATTTTATGACTCAGGTGATTGTGCAATTTTCTCATGTTACCTTTGATTATGTAGTAAGTTGTTAACTTATGGGAATGATGCAGATTTTGATTTTATGCAAGCAGGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAGTCACTTCATCATCAAATGTATCTCATAAATCAAGGTCGCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCCGTCAACATTGTGCAGAACGTACCCTGAAAACCATGTACAAGGTGATTTAACTTTTCTTTATATTTGTCTTTGCATTGTTAATTTTCACTAGGAATTGTGTATTTTTTACTTTCCTGGCCTTTCCCACATCAATTCAACAAAAATTTATTTCTTTTATTCAGCGCTTCTTTACCTTGGTTTAGTTAACCAATATAATGGGTATGGGTCACATATGGATAACTACAATAAAGAATACAGTCAGAGATATCGTGGAACAACTTTGGATAGCTTTAAGCAACCTAAATCACGCCGCCATGTTACGAGTTATCCAGTATACTATCCTTCTTATGATCTTTTGAAGTAAGGTAGGCGCAGCTAGCGCCTTCCATTTTGGTTAATCTTAAATGGTAATTTAAATCTTGTATCGCTTAGTTGGATGCAAATGGGTTAATAGTCATTTTGTAGGTGCGCACATGTCCATATGATTTTGGATGTGTCGTTATAGTTGATATGCTAATTAAAGTATTGTAGTGAAGAGGCTCGTTTCCTTTTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAAAGAATAAATTATTGTAACCCGTTTTATTAAATTTTCAGGTTTTCTTTAATTCCTGTTTAATTTTATGGATTATAAATGATAGTTTTCACTAATCAAAAGGTATTGTAACCGTTTTTCTTTTTGTATATCAAGTATTTAGTTATCAATTTCTTTTTCAGTTTTCAAGGTCATGTTTGAAAAGATGACCAAAGTTTGAATCTCATATGAGATTTAGAATTCCACCAAACTTTTAAACACATTTCTGAAAGTAGTTTCTCTTCCAGCATAATCTTGAAAACAGAAGAAAAATCTGTTATGTTATCAAGGGTTACTTTTTGTTTGTCTTGTTCCTGTGCCTTTATTTGTTGAAACTTCTAATTCTTATATTTTCAAGTGTGGCTTCATCTGAAATAAATGTATTGCATGCCATGCTTGAATTTTCAAGATGCAAACATTTGGTGA

mRNA sequence

ATGTCAGGAAGGTCAAATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAACCTTCACCTGTTAGCAATGCAATCACTTCATCATCAAGGTCGCAGATTGTTTCAGGTTACTCTAATGAAATATCTCAGTATACCAATCGCTTTTCCTCATCTTGCAGGTTTCCAACATATCCCGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCAATGGTTGTAGAAGGTTTGGAGGAAAATGATACGATATTTGGCTATTTGCTATGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCAGGATTATGAATTTTGGTTTACCATTTCTGCGTTTGGGTATGCCTGTACTGAAATTCATGGAAGGTTAAGTCGTATCCGCTTCAAACCTCAGGCGACATCAGCGAATAAACCCACGCAATCGATTTCGAAGTACCGCTGTTTTCAAGCTTGGAGGTCTCTGCTTCCGGCGGCTGCACACGCTTCATTCGGCCCTCATACGGATTGCCCATATCCTCTTCTGTTCGATTTTGTGAAATTAAATACAATCAATTCACTTTTCGACTCTTTTTGGGTAAGATTTAGTGATACGACCATGTCAGGAGGGTCTAATTCATGCACCGTTTACGTTGGGAACTTGGACGAAAGGGTTAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGATAAGGATTCTGGTAAACCCAAAGGTTTTGCTTTTGCAGTATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGCCTCGTGTCTCTTCATAGCCGTATCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAGTCACTTCATCATCAAATGTATCTCATAAATCAAGGTCGCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCCGTCAACATTGTGCAGAACGTACCCTGAAAACCATGTACAAGATGCAAACATTTGGTGA

Coding sequence (CDS)

ATGTCAGGAAGGTCAAATGGATGCACCATTTACGTTGGTAATTTGGATGAAAGAGTAAGTGACAGGGTTCTTTACGACATTCTAATCCAAGCTGGACGGGTTGTGGACTTGCACATTCCTCGAGACAAGGAATCTGGCAAACCTAAGGGTTTTGCTTTTGCAGAATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGTCTTGTGAATCTTCATAAACGTACCTTGAAGTTTGCAGTATCTGGGCAAGACAAACCTTCACCTGTTAGCAATGCAATCACTTCATCATCAAGGTCGCAGATTGTTTCAGGTTACTCTAATGAAATATCTCAGTATACCAATCGCTTTTCCTCATCTTGCAGGTTTCCAACATATCCCGAGAACCATCTTGAAGCTCTTCTTAACCCTGGTTTAGTTAACCAATTTAATGGGTATGGATCACATTTGGATAACTACAATAAAGAATACAGTCAGAGGTATTCTGGGACAAATTTGGATAGCTTTAACCAACCTAAATCACGCCGCCATGATTCGAGTTTTCCAATGGTTGTAGAAGGTTTGGAGGAAAATGATACGATATTTGGCTATTTGCTATGGTGCCTGCTAGCTTATGTTATTGAATACGTTGTCATTTTGCAGGATTATGAATTTTGGTTTACCATTTCTGCGTTTGGGTATGCCTGTACTGAAATTCATGGAAGGTTAAGTCGTATCCGCTTCAAACCTCAGGCGACATCAGCGAATAAACCCACGCAATCGATTTCGAAGTACCGCTGTTTTCAAGCTTGGAGGTCTCTGCTTCCGGCGGCTGCACACGCTTCATTCGGCCCTCATACGGATTGCCCATATCCTCTTCTGTTCGATTTTGTGAAATTAAATACAATCAATTCACTTTTCGACTCTTTTTGGGTAAGATTTAGTGATACGACCATGTCAGGAGGGTCTAATTCATGCACCGTTTACGTTGGGAACTTGGACGAAAGGGTTAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGATAAGGATTCTGGTAAACCCAAAGGTTTTGCTTTTGCAGTATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGCCTCGTGTCTCTTCATAGCCGTATCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAGTCACTTCATCATCAAATGTATCTCATAAATCAAGGTCGCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCCGTCAACATTGTGCAGAACGTACCCTGAAAACCATGTACAAGATGCAAACATTTGGTGA

Protein sequence

MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPMVVEGLEENDTIFGYLLWCLLAYVIEYVVILQDYEFWFTISAFGYACTEIHGRLSRIRFKPQATSANKPTQSISKYRCFQAWRSLLPAAAHASFGPHTDCPYPLLFDFVKLNTINSLFDSFWVRFSDTTMSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYSNHPSTLCRTYPENHVQDANIW

Homology

[Close]

BLAST of IVF0013550 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of IVF0013550 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of IVF0013550 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-13
Identity = 32/81 (39.51%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
          +S R+   T+YVG LDE+VS+ +L+++ +QAG VV+ H+P+D+ +G+ +G+ F E+ SEE
Sbjct: 6  ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65

Query: 61 IANYAVKLFSGLVNLHKRTLK 82
           A+YA+K+ + ++ L+ + ++
Sbjct: 66 DADYAIKIMN-MIKLYGKPIR 85

[Close]

BLAST of IVF0013550 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 3.9e-12
Identity = 31/78 (39.74%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 4  RSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIYVG LDE+VS+ +L+++++QAG VV +++P+D+ +   +GF F E+  EE A+
Sbjct: 9  RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68

Query: 64 YAVKLFSGLVNLHKRTLK 82
          YA+K+ + ++ L+ + +K
Sbjct: 69 YAIKILN-MIKLYGKPIK 85

[Close]

BLAST of IVF0013550 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 4  RSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
          R+   TIY+GNLDE+V+D +L+++ +QAG VV++HIPRD+      GF F E+  E+   
Sbjct: 7  RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66

Query: 64 YAVKLFSGLVNLHKRTLKFAVSGQDK 90
          YA ++ +  V L  + ++   + QD+
Sbjct: 67 YACQILN-QVKLFGKPIRVNRASQDR 91

HSP 2 Score: 47.0 bits (110), Expect = 6.7e-04
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 308 VRFSDTTMSGGSNS---CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKG 367
           +R +  +   G N+     ++VGNLD  V +RVLYD     G++V        ++G+ KG
Sbjct: 82  IRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKG 141

Query: 368 FAFAVYESEEIANYAVK 382
           + F  Y+S E A+ A++
Sbjct: 142 YGFVSYDSFETADAAIE 158

[Close]

BLAST of IVF0013550 vs. ExPASy TrEMBL
Match: A0A0A0KXV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1)

HSP 1 Score: 729.9 bits (1883), Expect = 6.3e-207
Identity = 383/452 (84.73%), Postives = 396/452 (87.61%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSR       S+EISQY+NRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSR-------SHEISQYSNRF 120

Query: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPMVVEGLEENDTIFGYLLWCLLAYVIEYVVILQDY-EFWFTISAFGYACTEIHGRL 240
           DSSFPMVV+GLEEND IFGYLL CLLAYVIEYVVIL     FWF ISAFGYAC       
Sbjct: 181 DSSFPMVVDGLEENDAIFGYLLRCLLAYVIEYVVILPGLCAFWFAISAFGYAC------- 240

Query: 241 SRIRFKPQATSANKPTQSISKYRCFQAWRSLLPAAAHASFGPHTDCPYPLLFDFVKLNTI 300
            R+ FKP A SANKPTQSISK+RCFQAWRS LPA  HAS   HTD PYP           
Sbjct: 241 -RLPFKPLAPSANKPTQSISKHRCFQAWRSQLPAPTHASIVSHTDYPYP----------- 300

Query: 301 NSLFDSFWVR-FSDTTMSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD 360
            + ++ F  R F  TTMSGGSN+CTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD
Sbjct: 301 QTDYNQFTFRLFFGTTMSGGSNACTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKD 360

Query: 361 SGKPKGFAFAVYESEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVS 420
           +GKPKGFAFAVYESEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSA+TSSSNVS
Sbjct: 361 TGKPKGFAFAVYESEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAITSSSNVS 420

Query: 421 HKSRSHGYSNEISQYSNHPSTLCRTYPENHVQ 451
           HKSRSHGYSNEISQYSNH ST CRTYPENHVQ
Sbjct: 421 HKSRSHGYSNEISQYSNHLSTSCRTYPENHVQ 426

[Close]

BLAST of IVF0013550 vs. ExPASy TrEMBL
Match: A0A1S3CAZ4 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 2.2e-98
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQY+NRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPM 187
           DSSFP+
Sbjct: 181 DSSFPV 186

[Close]

BLAST of IVF0013550 vs. ExPASy TrEMBL
Match: A0A5A7T7S6 (RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00940 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 6.8e-92
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 13  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 132
           VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 222

Query: 133 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPM 187
           HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP+
Sbjct: 223 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPV 276

[Close]

BLAST of IVF0013550 vs. ExPASy TrEMBL
Match: A0A1S3CAK8 (RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.3e-82
Identity = 161/186 (86.56%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS                   
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS------------------- 120

Query: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
               RFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 ----RFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 163

Query: 181 DSSFPM 187
           DSSFP+
Sbjct: 181 DSSFPV 163

[Close]

BLAST of IVF0013550 vs. ExPASy TrEMBL
Match: A0A6J1I8J0 (RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471946 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.6e-80
Identity = 155/192 (80.73%), Postives = 170/192 (88.54%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESG+P+G+AFAEYE+EE
Sbjct: 1   MSGRSNGCTIYIGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGRPRGYAFAEYENEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSS------SRSQIVSGYSNEIS 120
           I NYAVKLFSGLV LH RTLKFAVSGQDKPSP S+AITSS      SRSQIV GYSNEIS
Sbjct: 61  ITNYAVKLFSGLVTLHNRTLKFAVSGQDKPSPSSSAITSSSNISHKSRSQIVPGYSNEIS 120

Query: 121 QYTNRFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQ 180
            Y+NR S+SCRF  YPENHLEA   PGLVNQ NGYGS+ D++N +YSQRYSGTNLDSFN 
Sbjct: 121 SYSNRLSNSCRFSAYPENHLEAPPYPGLVNQSNGYGSNSDHHNNQYSQRYSGTNLDSFNH 180

Query: 181 PKSRRHDSSFPM 187
           PKSRRHD+S+P+
Sbjct: 181 PKSRRHDTSYPV 192

[Close]

BLAST of IVF0013550 vs. NCBI nr
Match: XP_008459559.1 (PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo])

HSP 1 Score: 369 bits (946), Expect = 4.05e-124
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQY+NRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYSNRF 120

Query: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180

Query: 181 DSSFPM 186
           DSSFP+
Sbjct: 181 DSSFPV 186

[Close]

BLAST of IVF0013550 vs. NCBI nr
Match: KAA0039300.1 (RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 347 bits (890), Expect = 2.89e-114
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 13  GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 72
           GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL
Sbjct: 103 GNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANYAVKLFSGL 162

Query: 73  VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 132
           VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN
Sbjct: 163 VNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRFSSSCRFPTYPEN 222

Query: 133 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPM 186
           HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFP+
Sbjct: 223 HLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRHDSSFPV 276

[Close]

BLAST of IVF0013550 vs. NCBI nr
Match: XP_011656074.1 (RNA-binding protein 7 isoform X2 [Cucumis sativus] >KAE8648992.1 hypothetical protein Csa_007721 [Cucumis sativus])

HSP 1 Score: 343 bits (879), Expect = 4.49e-114
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIY+GNLDE+VSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYIGNLDEKVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSP SNAITSSSRS       +EISQY+NRF
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPGSNAITSSSRS-------HEISQYSNRF 120

Query: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
           S SCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 SPSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 179

Query: 181 DSSFPM 186
           DSSFP+
Sbjct: 181 DSSFPV 179

[Close]

BLAST of IVF0013550 vs. NCBI nr
Match: XP_038890192.1 (RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890194.1 RNA-binding protein 7-like isoform X1 [Benincasa hispida])

HSP 1 Score: 338 bits (866), Expect = 5.53e-112
Identity = 171/191 (89.53%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRSNGCTIYVGN DERVS+RVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSNGCTIYVGNFDERVSERVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSS-----RSQIVSGYSNEISQ 120
           IANYAVKLFSGLVNLH RTLKFAVSGQDKPSP SNAITSSS     RSQI SGYSNEISQ
Sbjct: 61  IANYAVKLFSGLVNLHNRTLKFAVSGQDKPSPGSNAITSSSISNKSRSQIFSGYSNEISQ 120

Query: 121 YTNRFSSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQP 180
           Y+NRFS+SCRF TYPENHLEALL PGLVNQ+NGYGSHLDNYNKEYSQRYSGT LDS NQP
Sbjct: 121 YSNRFSTSCRFTTYPENHLEALLYPGLVNQYNGYGSHLDNYNKEYSQRYSGTTLDSLNQP 180

Query: 181 KSRRHDSSFPM 186
           KSRR D+SFP+
Sbjct: 181 KSRRRDTSFPV 191

[Close]

BLAST of IVF0013550 vs. NCBI nr
Match: XP_008459561.1 (PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo])

HSP 1 Score: 313 bits (801), Expect = 1.63e-102
Identity = 161/186 (86.56%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSGRS GCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE
Sbjct: 1   MSGRSKGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQIVSGYSNEISQYTNRF 120
           IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSR                  
Sbjct: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSR------------------ 120

Query: 121 SSSCRFPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 180
                FPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH
Sbjct: 121 -----FPTYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQPKSRRH 163

Query: 181 DSSFPM 186
           DSSFP+
Sbjct: 181 DSSFPV 163

[Close]

BLAST of IVF0013550 vs. TAIR 10
Match: AT4G10110.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-41
Identity = 101/186 (54.30%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 1   MSGRSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEE 60
           MSG SN CT+Y+GN+DERVSDRVLYDI+IQAGRV+DLHIPRDKE+ KPKGFAFAEYE+EE
Sbjct: 1   MSGTSN-CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 60

Query: 61  IANYAVKLFSGLVNLHKRTLKFAVSGQDKPSPVSNAITSSSRSQ---IVSGYSNEIS-QY 120
           IA+YAVKLFSGLV+L+ RTLKFA+SGQDK    SN+  S  R++   +   +S+  +  +
Sbjct: 61  IADYAVKLFSGLVSLYNRTLKFAISGQDKLQ--SNSANSGHRARPQSLAFEHSDRAAYHH 120

Query: 121 TNRFSSSCRFP--TYPENHLEALLNPGLVNQFNGYGSHLDNYNKEYSQRYSGTNLDSFNQ 180
             RFSS    P    P ++ +    PG+ N     G+ L     EYS+R  G+ LDS N 
Sbjct: 121 LERFSSQLISPPSPLPLDYTQEPPPPGVSN-----GASL-----EYSRRVLGSALDSINH 173

[Close]

BLAST of IVF0013550 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-14
Identity = 32/88 (36.36%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 4   RSNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIAN 63
           R+   T+YVG LD ++S+ +L+++ +QAG VV++++P+D+ +   + + F EY SEE A+
Sbjct: 21  RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80

Query: 64  YAVKLFSGLVNLHKRTLKFAVSGQDKPS 92
           YA+K+ + ++ LH + ++   + QDK S
Sbjct: 81  YAIKVLN-MIKLHGKPIRVNKASQDKKS 107

[Close]

BLAST of IVF0013550 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 4.6e-08
Identity = 27/70 (38.57%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 316 SGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGKPKGFAFAVYESEEI 375
           SG  +   VYVGNL   V D  L  +  + G+VV+  +  D+DSG+ KGF F  Y+S + 
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257

Query: 376 ANYAVKLFSG 386
              A+K   G
Sbjct: 258 VQNAIKSLDG 267

[Close]

BLAST of IVF0013550 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 5  SNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          S+  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHKRTLKFAVSG 87
          AV+   G +V+  + T++FA  G
Sbjct: 73 AVERLDGRVVDGREITVQFAKYG 95

[Close]

BLAST of IVF0013550 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 5  SNGCTIYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAEYESEEIANY 64
          S+  ++ V N+  R +   LY +  + G+VVD+ IPRD+ +G  +GFAF  Y+ ++ A+ 
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72

Query: 65 AVKLFSG-LVNLHKRTLKFAVSG 87
          AV+   G +V+  + T++FA  G
Sbjct: 73 AVERLDGRVVDGREITVQFAKYG 95

The following BLAST results are available for this feature:

BLAST of IVF0013550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15427	7.9e-13	39.51	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
Q8QZY9	7.9e-13	39.51	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
Q6AYL5	7.9e-13	39.51	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
Q09442	3.9e-12	39.74	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
O14102	1.9e-11	38.37	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of IVF0013550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXV1	6.3e-207	84.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648670 PE=4 SV=1	[more]
A0A1S3CAZ4	2.2e-98	98.39	RNA-binding protein 7-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A5A7T7S6	6.8e-92	99.43	RNA-binding protein 7-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CAK8	6.3e-82	86.56	RNA-binding protein 7-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498657 PE...	[more]
A0A6J1I8J0	1.6e-80	80.73	RNA-binding protein 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11147194...	[more]

BLAST of IVF0013550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459559.1	4.05e-124	98.39	PREDICTED: RNA-binding protein 7-like isoform X1 [Cucumis melo] >XP_008459560.1 ...	[more]
KAA0039300.1	2.89e-114	99.43	RNA-binding protein 7-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011656074.1	4.49e-114	92.47	RNA-binding protein 7 isoform X2 [Cucumis sativus] >KAE8648992.1 hypothetical pr...	[more]
XP_038890192.1	5.53e-112	89.53	RNA-binding protein 7-like isoform X1 [Benincasa hispida] >XP_038890193.1 RNA-bi...	[more]
XP_008459561.1	1.63e-102	86.56	PREDICTED: RNA-binding protein 7-like isoform X3 [Cucumis melo] >XP_008459562.1 ...	[more]

BLAST of IVF0013550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10110.1	4.1e-41	54.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G18510.1	9.5e-14	36.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	4.6e-08	38.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G64200.1	1.1e-06	34.94	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.1e-06	34.94	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 323..397 e-value: 2.4E-16 score: 70.3 coord: 9..83 e-value: 4.8E-17 score: 72.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 324..385 e-value: 8.0E-12 score: 44.8 coord: 10..80 e-value: 2.4E-13 score: 49.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..87 score: 14.743426
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 322..401 score: 14.146487
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..92 e-value: 1.8E-18 score: 68.5 coord: 316..410 e-value: 8.6E-18 score: 66.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..429
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 1..186
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 315..405
None	No IPR available	PANTHER	PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	coord: 315..405
None	No IPR available	PANTHER	PTHR13798:SF11	OS01G0876500 PROTEIN	coord: 1..186
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 315..394
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013550.2	IVF0013550.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding