IVF0013475 (gene) Melon (IVF77) v1

Overview
NameIVF0013475
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 26695043 .. 26696409 (-)
RNA-Seq ExpressionIVF0013475
SyntenyIVF0013475
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTTTGGAACGACTACACAACCGGTAGGGTTCCGTGTCATAGAGATTTTGTTTTGGGCCAAATTTCGTCCGAATAGGCCCATTTCGATAATTGTGGGAAAAGAATATCTTTTATTTTCTATTTAGAAAATTCTTAAACCAAAGTCATAAAACTGTTTAGTAAACGTCAAATTTAAATTATATATATTTAATTTCATTATCGTATTTCCATGATTAAACCTATCAAATCATCTCTTATTCCCTTCTCAAATTTACACTTGACTTCAAATTAAAAAGGAAAAAAAATCTTCATATTTTTCAATTGAAAAACTTTCATATAAAGATATTTTAAACTGATTTGATTGTTTGTTAAAACAAATTCTTACTAAACATTTTTAAACTTTTGGCAAAACCTATTAAACTTTTTATACGGTGAAATTTACCTAACACTAAAGAGTGTTTTGGTTGTATTTATTTAATTAGGAGGAGAGTTGACGTGAATAACAGGTCCGTTTGAATCGGTCAACGTTGGACGTGGCAGACACGTGGACAACCGCAGTTGGTGGGTCCAGCGAAAGTCCGACTGTAGCCGATTCTCGAACGCATCACGTTTCCGAGAAGAAAAAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCCTCGATAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGACCCAGAGAGAGGGGACGGAGTAGACGGGAGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCCGATTTATATATATGTTCATTTTACTAAGCTTTTCTCAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCACTCAGTCAAATCACTAGTAAGTTCTTCCCTCAACTTGTTGTTTGTTTTTATATCTTTTGTGTTTGATTGGATTCCCTCTTTTCGATGTATTTCATTTTTTTGATTGGTTCTTCCTGGGGGGTTTGGGTAGTTTTAATTTCAATTCGAAAATTTTTCCGCAACTGGGTTTTTGTTTTTATCGAAATCTTAATTAGGGGTTCGAAATGTTTTGATTGGGTGGAATTTGTATTGGGTTGCGGGAGTTTTTCATTTTGTTTTTCTTTTCTCTATGAGTTTGTTGTGATTGAGTAATTCTTTACGATTATGGTGATCGAATTCTGATGGGGGATTGGTATCTCTTTGATAGATTGATGGGGGCTTTGTTATAATTGAAGGGGTTTGGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCTTTTCTGGGTATTCTCAGGCCGCCTTGTCCATCTGTTGA

mRNA sequence

ATGGCGATTTTGGAACGACTACACAACCGACACGTGGACAACCGCAGTTGGTGGGTCCAGCGAAAGTCCGACTGTAGCCGATTCTCGAACGCATCACGTTTCCGAGAAGAAAAAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCCTCGATAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGACCCAGAGAGAGGGGACGGAGTAGACGGGAGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCCGATTTATATATATGTTCATTTTACTAAGCTTTTCTCAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCACTCAGTCAAATCACTAGTAAGTTCTTCCCTCAACTTGTTGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCTTTTCTGGGTATTCTCAGGCCGCCTTGTCCATCTGTTGA

Coding sequence (CDS)

ATGGCGATTTTGGAACGACTACACAACCGACACGTGGACAACCGCAGTTGGTGGGTCCAGCGAAAGTCCGACTGTAGCCGATTCTCGAACGCATCACGTTTCCGAGAAGAAAAAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCCTCGATAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGACCCAGAGAGAGGGGACGGAGTAGACGGGAGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCCGATTTATATATATGTTCATTTTACTAAGCTTTTCTCAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCACTCAGTCAAATCACTAGTAAGTTCTTCCCTCAACTTGTTGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCTTTTCTGGGTATTCTCAGGCCGCCTTGTCCATCTGTTGA

Protein sequence

MAILERLHNRHVDNRSWWVQRKSDCSRFSNASRFREEKGKNKFLNPIKKRLDRTNQSRFKREEDPERGDGVDGRFGVAARKDFLSPCGEEERFPIYIYVHFTKLFSRNCDLYCPFSRHHSVKSLVSSSLNLLLSFIVPVDVSCRLSRRRSACEFAQIFSGYSQAALSIC
Homology
[Close]
BLAST of IVF0013475 vs. ExPASy TrEMBL
Match: A0A0A0LN05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 8.8e-45
Identity = 112/169 (66.27%), Postives = 126/169 (74.56%), Query Frame = 0 

Query: 1   MAILERLHNRHVDNR-SWWVQRKSDCSRFSNASRFREEKGKNKFLNPIKKRLDRTNQSRF 60
           MAI ER+  +    +     Q +SD SRFSNASRFREE GKNKFLNPIKKR++RTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDPERGDGVDGRFGVAARKDFLSPCGEEERFPIYIYVHFTKLFSRNCDLYCPFSRHH 120
           KREEDPERGDGVDG FGVAARKDFLSPCGEEERF + IY+     FS+   + C      
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERF-LIIYMVVLLRFSQGTAI-C------ 120

Query: 121 SVKSLVSSSLNLLLSFIVPVDVSCRLSRRRSACEFAQIFSGYSQAALSI 169
           +  S V+   N  LSFIVPVDVSCRLSRRR ACEFA+I +GYSQAALSI
Sbjct: 121 TAPSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSI 161

[Close]
BLAST of IVF0013475 vs. NCBI nr
Match: KGN62379.1 (hypothetical protein Csa_018717 [Cucumis sativus])

HSP 1 Score: 191 bits (485), Expect = 5.29e-59
Identity = 113/169 (66.86%), Postives = 126/169 (74.56%), Query Frame = 0 

Query: 1   MAILERLHNRHVDNR-SWWVQRKSDCSRFSNASRFREEKGKNKFLNPIKKRLDRTNQSRF 60
           MAI ER+  +    +     Q +SD SRFSNASRFREE GKNKFLNPIKKR++RTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDPERGDGVDGRFGVAARKDFLSPCGEEERFPIYIYVHFTKLFSRNCDLYCPFSRHH 120
           KREEDPERGDGVDG FGVAARKDFLSPCGEEERF I IY+     FS+   + C      
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLI-IYMVVLLRFSQGTAI-C------ 120

Query: 121 SVKSLVSSSLNLLLSFIVPVDVSCRLSRRRSACEFAQIFSGYSQAALSI 168
           +  S V+   N  LSFIVPVDVSCRLSRRR ACEFA+I +GYSQAALSI
Sbjct: 121 TAPSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSI 161

[Close]
BLAST of IVF0013475 vs. NCBI nr
Match: KAG6585750.1 (hypothetical protein SDJN03_18483, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020661.1 hypothetical protein SDJN02_17347, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 2.13e-25
Identity = 69/125 (55.20%), Postives = 77/125 (61.60%), Query Frame = 0 

Query: 49  KRLDRTNQSRFKR--EEDPERGDGVDGRFGVAARKDFLSP--CGEEERFPIYIYVHFTKL 108
           KRL+ TNQSRF R  EE    G     R G+   ++   P  CG  ERF    +V FTKL
Sbjct: 24  KRLEGTNQSRFLRSGEERSREGGPRRSRRGIRRFREERFPFRCGCRERFR---FVFFTKL 83

Query: 109 FSRNCDLYCPFSRHHSVKSLVSSSLNLLLSFIVPVDVSCRLSRRRSACEFAQIFSGYSQA 168
            + NCD YC         S VS+ LN  LS IVPVDVSCR SRRRSACEFAQI SGYSQA
Sbjct: 84  STTNCDYYCL--------SPVSTPLNHELSLIVPVDVSCRHSRRRSACEFAQILSGYSQA 137

The following BLAST results are available for this feature:
BLAST of IVF0013475 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0013475 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN058.8e-4566.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1[more]
BLAST of IVF0013475 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62379.15.29e-5966.86hypothetical protein Csa_018717 [Cucumis sativus][more]
KAG6585750.12.13e-2555.20hypothetical protein SDJN03_18483, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of IVF0013475 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013475.1IVF0013475.1mRNA