IVF0013306 (gene) Melon (IVF77) v1

Overview
NameIVF0013306
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr06: 22487161 .. 22487871 (+)
RNA-Seq ExpressionIVF0013306
SyntenyIVF0013306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAAAACTAATTATTTTGTGCCTAACTTTTACAAGAATATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCTCTTGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAATGTTGCCTCTTCCGGCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTGGTGTAAGAGAGTCAGTCAGAAAGCTCGATGCAAATGTAGGTGTAGGTACAGGTGTAGATCTAGATCTGCTAGGAAGCCCACTTTTATATCTAGGAACCCCAGGGACCAATGTAGGCATAGGGTTAGGTAATGGTTCTGGAGGTGTACCTAGTGGTGGTGGTAAGTAGAGAGGTGGTTCGACGGTGGTGTTTGGGTTAAAAGGTGAATTCTCCCTTGAAGAATAATGTTTTTACTACTAAGGAGAAATTAAGTTTCTTCTAAACCCTATCTATGCTATATAGTTTTAAGTATTTGCTTTTGTACGTGTGTAATGTGCAACTTGTGCTTCTTTCTATGTTTGTGTTTGTTGTTCTATAATAAAAAAGTTTCCTATAAAAGTATTAAGAAGATCATGTTAACCTAGTTGAAATGTCTAACTACACCTACCGATATGTCTTTCTCATAATAAAAAAGTTTCAAATGTTGAAGAAACCACTTTTGACCTACACTATTTCCACTGTTTCCATTGGTATTGTAATTTTCAAAGGCAC

mRNA sequence

TCCAAAACTAATTATTTTGTGCCTAACTTTTACAAGAATATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCTCTTGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAATGTTGCCTCTTCCGGCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTGGTGTAAGAGAGTCAGTCAGAAAGCTCGATGCAAATGTAGGTGTAGGTACAGGTGTAGATCTAGATCTGCTAGGAAGCCCACTTTTATATCTAGGAACCCCAGGGACCAATGTAGGCATAGGGTTAGGTAATGGTTCTGGAGGTGTACCTAGTGGTGGTGGTAAGTAGAGAGGTGGTTCGACGGTGGTGTTTGGGTTAAAAGGTGAATTCTCCCTTGAAGAATAATGTTTTTACTACTAAGGAGAAATTAAGTTTCTTCTAAACCCTATCTATGCTATATAGTTTTAAGTATTTGCTTTTGTACGTGTGTAATGTGCAACTTGTGCTTCTTTCTATGTTTGTGTTTGTTGTTCTATAATAAAAAAGTTTCCTATAAAAGTATTAAGAAGATCATGTTAACCTAGTTGAAATGTCTAACTACACCTACCGATATGTCTTTCTCATAATAAAAAAGTTTCAAATGTTGAAGAAACCACTTTTGACCTACACTATTTCCACTGTTTCCATTGGTATTGTAATTTTCAAAGGCAC

Coding sequence (CDS)

ATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCTCTTGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAATGTTGCCTCTTCCGGCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTGGTGTAAGAGAGTCAGTCAGAAAGCTCGATGCAAATGTAGGTGTAGGTACAGGTGTAGATCTAGATCTGCTAGGAAGCCCACTTTTATATCTAGGAACCCCAGGGACCAATGTAGGCATAGGGTTAGGTAATGGTTCTGGAGGTGTACCTAGTGGTGGTGGTAAGTAG

Protein sequence

MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANVGVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK
Homology
BLAST of IVF0013306 vs. ExPASy TrEMBL
Match: A0A5A7VBZ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00010 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.7e-46
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV 60
           MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV 60

Query: 61  GVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 103
           GVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK
Sbjct: 61  GVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102

BLAST of IVF0013306 vs. ExPASy TrEMBL
Match: A0A0A0L669 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G065250 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.8e-22
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRK----- 60
           MTSKIVFLVLLGALVCSTFEARKL++ASS QDEKFEDHGLVDGELSG  R    +     
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60

Query: 61  LDANVGVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 103
            +++V +G GV       P+LY+GTP  NVGIG+  GS   PSGGGK
Sbjct: 61  FNSSVSLGVGVG----SPPVLYVGTPPINVGIGVSGGSENGPSGGGK 103

BLAST of IVF0013306 vs. NCBI nr
Match: KAA0065832.1 (hypothetical protein E6C27_scaffold37G001400 [Cucumis melo var. makuwa] >TYK24041.1 hypothetical protein E5676_scaffold943G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 7.63e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV 60
           MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV 60

Query: 61  GVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102
           GVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK
Sbjct: 61  GVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102

BLAST of IVF0013306 vs. NCBI nr
Match: KGN56077.1 (hypothetical protein Csa_011309 [Cucumis sativus])

HSP 1 Score: 110 bits (276), Expect = 3.94e-29
Identity = 69/104 (66.35%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRKLDANV 60
           MTSKIVFLVLLGALVCSTFEARKL++ASS QDEKFEDHGLVDGELSG  R    +    +
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQF-IGI 60

Query: 61  GVGTGVDLDL-LGSP-LLYLGTPGTNVGIGLGNGSGGVPSGGGK 102
           G  + V L + +GSP +LY+GTP  NVGIG+  GS   PSGGGK
Sbjct: 61  GFNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VBZ13.7e-46100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L6694.8e-2263.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G065250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0065832.17.63e-61100.00hypothetical protein E6C27_scaffold37G001400 [Cucumis melo var. makuwa] >TYK2404... [more]
KGN56077.13.94e-2966.35hypothetical protein Csa_011309 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0013306.1IVF0013306.1mRNA