IVF0013275 (gene) Melon (IVF77) v1

Overview


Name	IVF0013275
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Fom-2 protein
Location	chr11: 6812344 .. 6814067 (-)
RNA-Seq Expression	IVF0013275
Synteny	IVF0013275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTTCAAGGGATCAAAATTTGCAACTACATCCTACAAATATATTGAGAAGGAACTTCAAAATAAGGAGATTCAAAATGTTGCAGGTAAGTTACGCACGATTGATTTCATTCAAAAGATTCCTTACAATGTAGATCATACACTTTTTTATGTTGAGATAAGGAACTTTGTTTGTCTGCGTGTTTTGAAGATGTCTAGTTATAAGTTATCGAAGTCAATTAATCAATTGAAACACTTGAGATATCTAGAAATTTCAAGTTACTCAATGAGATTAAGATCTCTAGAGTCTATTGGTTCACTTCATAATTTGCAAACATTGAAGTTATTAGTCTCAATTATTGAAGAATTTCCAACGAACTTTACAAATTTGGTAAATTTAAGACACTTGGAAGTCACTGTGATTGATTACAAGACGCCTCCACGTTTAAGTCAATTGACTCAACTTCAAACGTTGTCTCATTTTGCAATCGGGTTTGAGAAAGGTTGTAAGATTACTGAATTGGGGCCATTGAAAAACTTGCAAGGTAGTTTGAGACTTTTTTGTTTGGAGAAAGTTGAAAGTAAAGAGGAAGCAAATGGAGCATATTTTGTAGATAAGGAGAATTTAAAAAAGCTAAAGTTAAGTTGGAACATGGAAAGAAAAAATAACAACAGGTACAATGATTTGGAAGTGTTGGAAAGACTTCAACCAAACAAAAATCTCCAATCATTAATTATCCATGGCTTTGCAGGAAGACGTTTGCCTAACAATATTTTTGTTGAGAATTTAAGAGAGATATGTTTGTCTTATTGTAATAGTTGTGAAAAGCTTCCAATGCTTGGACAATTAAACAACCTAAAGAAACTTCATATTGTCGGCTTTCAAGGTGTCCAAATTATGGACAACGAGTTTTTTGGTAATGATTCAAACCAAAGAAGATTCTTCCCAAAGCTTGAGAAATTTTAATGCAGAATATGATCAACTTAGAGCAATGGGAAGAAGTAATGACAAATGATGCATCATCTGATGTTACAATTTTTCCCAATCTTAAATGGTTGGAAATAATTAGTTGTCCCAAATTATTAAACATTCCAGAAGTTTTTTATGAGAATAGTGTGCAACACCTTGAAGGATTGACTGTTTCATACTATAACAAATTAAGAAAACTTCCAAATGGACTACACTTTTGTAGTTCCATCCGACATGTGAAAATAGATCAATGTTCAAATTTGACCATAAATATGAGAAACAAGTCGGAATTGTGTTATTTTTAGGCATTGGTCCGTTGGAGAAGCTGCCAGAAGGTTTATGTCATCTCATGAATTTGAGGAGAACGAGAATTGTTGGAAATATGCAGAATTATGATTTTGACTTCCTTCATTACCTTCCTTCCCTTAAACAAATTACTTTAGTCGAGGATGAGTTGGGCGATAATAGAGTAGAACAAATTCCTCAACAACTTCAACACCTCACTGCCTTGGAATCTCTTTGCATTGAAAATTTTGGAGGCATTATTGAAGCTTTGCCAGAATGGTTAGGAAACTTTGTATGTTTGCAATCACTTGAACTTTGTAATTGCAAAAATTTGAAAAGCCTGCCTTCTACAGAAGCAATGCTACGTCTCACCAAATTAAATTTATTGTATGCTTATAAATGTCCAGAGCTACTACTTGACGAAGGGACATGGAGCGGGCAAAACTTTCCCACCTTCCACAAATTCAGATTTCTCTTCATAAATAG

mRNA sequence

ATGGCAATTTCAAGGGATCAAAATTTGCAACTACATCCTACAAATATATTGAGAAGGAACTTCAAAATAAGGAGATTCAAAATGTTGCAGGTAAGAAGACGTTTGCCTAACAATATTTTTGTTGAGAATTTAAGAGAGATATGTTTGTCTTATTGTAATAGTTGTGAAAAGCTTCCAATGCTTGGACAATTAAACAACCTAAAGAAACTTCATATTGTCGGCTTTCAAGGTGTCCAAATTATGGACAACGAGTTTTTTGGCATTGGTCCGTTGGAGAAGCTGCCAGAAGGTTTATGTCATCTCATGAATTTGAGGAGAACGAGAATTGTTGGAAATATGCAGAATTATGATTTTGACTTCCTTCATTACCTTCCTTCCCTTAAACAAATTACTTTAGTCGAGGATGAGTTGGGCGATAATAGAGTAGAACAAATTCCTCAACAACTTCAACACCTCACTGCCTTGGAATCTCTTTGCATTGAAAATTTTGGAGGCATTATTGAAGCTTTGCCAGAATGGGACATGGAGCGGGCAAAACTTTCCCACCTTCCACAAATTCAGATTTCTCTTCATAAATAG

Coding sequence (CDS)

ATGGCAATTTCAAGGGATCAAAATTTGCAACTACATCCTACAAATATATTGAGAAGGAACTTCAAAATAAGGAGATTCAAAATGTTGCAGGTAAGAAGACGTTTGCCTAACAATATTTTTGTTGAGAATTTAAGAGAGATATGTTTGTCTTATTGTAATAGTTGTGAAAAGCTTCCAATGCTTGGACAATTAAACAACCTAAAGAAACTTCATATTGTCGGCTTTCAAGGTGTCCAAATTATGGACAACGAGTTTTTTGGCATTGGTCCGTTGGAGAAGCTGCCAGAAGGTTTATGTCATCTCATGAATTTGAGGAGAACGAGAATTGTTGGAAATATGCAGAATTATGATTTTGACTTCCTTCATTACCTTCCTTCCCTTAAACAAATTACTTTAGTCGAGGATGAGTTGGGCGATAATAGAGTAGAACAAATTCCTCAACAACTTCAACACCTCACTGCCTTGGAATCTCTTTGCATTGAAAATTTTGGAGGCATTATTGAAGCTTTGCCAGAATGGGACATGGAGCGGGCAAAACTTTCCCACCTTCCACAAATTCAGATTTCTCTTCATAAATAG

Protein sequence

MAISRDQNLQLHPTNILRRNFKIRRFKMLQVRRRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFGIGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFDFLHYLPSLKQITLVEDELGDNRVEQIPQQLQHLTALESLCIENFGGIIEALPEWDMERAKLSHLPQIQISLHK

Homology

[Close]

BLAST of IVF0013275 vs. ExPASy TrEMBL
Match: Q694W1 (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 8.7e-41
Identity = 123/321 (38.32%), Postives = 131/321 (40.81%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           R LPN IFVENLRE+ L  CN+CE LPMLGQLNNLKKL I  FQ +QI+DNEF+G     
Sbjct: 226 RHLPNRIFVENLREVNLHGCNNCENLPMLGQLNNLKKLEIYNFQELQIIDNEFYGNDLNQ 285

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 286 RRFFPKLEKFVMCDMVNLQQWEEVMTNDASSNITIFPNLRSLEIRRCPKLLNIPEVFDEN 345

Query: 153 ---------------------------------------------------IGPLEKLPE 189
                                                              IGPLEKLPE
Sbjct: 346 NVQHLESLIVSHCNKLTKLPNGLHFCSSIQCVKCSNLSINIRNKSELCYLNIGPLEKLPE 405

[Close]

BLAST of IVF0013275 vs. ExPASy TrEMBL
Match: Q694W4 (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 107/234 (45.73%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DN+F+G     
Sbjct: 226 RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNKFYGNDPNQ 285

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 286 RRFFPKLEKFVMQNMINLEQWEEVMTNDASSNVTIFPNLKSLEISGCPKLTKIPNGLQFC 345

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 174
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 346 SSIRRVKIYQCSNLGINMRNKPELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 405

[Close]

BLAST of IVF0013275 vs. ExPASy TrEMBL
Match: A0A4Y6JLT3 (Fom-2 protein (Fragment) OS=Cucumis melo var. cantalupensis OX=3658 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 107/234 (45.73%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DN+F+G     
Sbjct: 90  RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNKFYGNDPNQ 149

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 150 RRFFPKLEKFVMQNMINLEQWEEVMTNDASSNVTIFPNLKSLEISGCPKLTKIPNGLQFC 209

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 174
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 210 SSIRRVKIYQCSNLGINMRNKPELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 269

[Close]

BLAST of IVF0013275 vs. ExPASy TrEMBL
Match: A0A4Y6JLW0 (Fom-2 protein (Fragment) OS=Cucumis melo var. cantalupensis OX=3658 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 107/234 (45.73%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DN+F+G     
Sbjct: 90  RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNKFYGNDPNQ 149

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 150 RRFFPKLEKFVMQNMINLEQWEEVMTNDASSNVTIFPNLKSLEISGCPKLTKIPNGLQFC 209

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 174
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 210 SSIRRVKIYQCSNLGINMRNKPELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 269

[Close]

BLAST of IVF0013275 vs. ExPASy TrEMBL
Match: A0A0A0LRE1 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G435460 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.3e-40
Identity = 108/234 (46.15%), Postives = 116/234 (49.57%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL  I L  CN+CEKLPMLGQLNNLKKL I  F GVQI+DNEF+G     
Sbjct: 602 RRLPNKIFVENLSVIGLYGCNNCEKLPMLGQLNNLKKLEIYSFHGVQIIDNEFYGNDLNQ 661

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 662 RRFFPKLEIFVMCDMINLEQWKEVMTNDASSNVTIFSNLKCLEIRGCPKLTKLPNGLHFC 721

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 174
                                       IGPL+KLPE LCHLMNL   RIVGNMQNYDF 
Sbjct: 722 SSIRRVTINQGSNLSINMRNKPKLWYLNIGPLDKLPEDLCHLMNLGVMRIVGNMQNYDFG 781

[Close]

BLAST of IVF0013275 vs. NCBI nr
Match: QDF82818.1 (Fom-2 protein, partial [Cucumis melo var. cantalupo])

HSP 1 Score: 176 bits (447), Expect = 5.14e-50
Identity = 107/234 (45.73%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DN+F+G     
Sbjct: 90  RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNKFYGNDPNQ 149

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 150 RRFFPKLEKFVMQNMINLEQWEEVMTNDASSNVTIFPNLKSLEISGCPKLTKIPNGLQFC 209

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 173
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 210 SSIRRVKIYQCSNLGINMRNKPELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 269

[Close]

BLAST of IVF0013275 vs. NCBI nr
Match: QDF82817.1 (Fom-2 protein, partial [Cucumis melo var. cantalupo])

HSP 1 Score: 176 bits (447), Expect = 5.14e-50
Identity = 107/234 (45.73%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DN+F+G     
Sbjct: 90  RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNKFYGNDPNQ 149

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 150 RRFFPKLEKFVMQNMINLEQWEEVMTNDASSNVTIFPNLKSLEISGCPKLTKIPNGLQFC 209

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 173
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 210 SSIRRVKIYQCSNLGINMRNKPELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 269

[Close]

BLAST of IVF0013275 vs. NCBI nr
Match: QDF82816.1 (Fom-2 protein, partial [Cucumis melo var. cantalupo])

HSP 1 Score: 174 bits (442), Expect = 2.85e-49
Identity = 106/234 (45.30%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DNEF+G     
Sbjct: 90  RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNEFYGNDPNQ 149

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 150 RRFFPKLEKFAMGGMMNLEQWEEVMTNDASSNVTIFPNLRSLEIRGCPKLTKIPNGLHFC 209

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 173
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 210 SSIRRVKIYKCSNLSINMRNKLELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 269

[Close]

BLAST of IVF0013275 vs. NCBI nr
Match: AAT77094.1 (Fom-2 protein, partial [Cucumis melo] >AAT77095.1 Fom-2 protein, partial [Cucumis melo] >AAT77096.1 Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 176 bits (447), Expect = 7.78e-49
Identity = 107/234 (45.73%), Postives = 118/234 (50.43%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           RRLPN IFVENL EI L  C++CEKLPMLGQLNNLKKL I  F GVQI+DN+F+G     
Sbjct: 226 RRLPNKIFVENLIEIGLYGCDNCEKLPMLGQLNNLKKLEICSFDGVQIIDNKFYGNDPNQ 285

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 286 RRFFPKLEKFVMQNMINLEQWEEVMTNDASSNVTIFPNLKSLEISGCPKLTKIPNGLQFC 345

Query: 153 ----------------------------IGPLEKLPEGLCHLMNLRRTRIVGNMQNYDFD 173
                                       IGPL+KLPE LCHLMNL    IVGN+QNYDF 
Sbjct: 346 SSIRRVKIYQCSNLGINMRNKPELWYLHIGPLDKLPEDLCHLMNLGVMTIVGNIQNYDFG 405

[Close]

BLAST of IVF0013275 vs. NCBI nr
Match: AAT77098.1 (Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 176 bits (447), Expect = 1.10e-48
Identity = 123/321 (38.32%), Postives = 131/321 (40.81%), Query Frame = 0


Query: 33  RRLPNNIFVENLREICLSYCNSCEKLPMLGQLNNLKKLHIVGFQGVQIMDNEFFG----- 92
           R LPN IFVENLRE+ L  CN+CE LPMLGQLNNLKKL I  FQ +QI+DNEF+G     
Sbjct: 226 RHLPNRIFVENLREVNLHGCNNCENLPMLGQLNNLKKLEIYNFQELQIIDNEFYGNDLNQ 285

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 286 RRFFPKLEKFVMCDMVNLQQWEEVMTNDASSNITIFPNLRSLEIRRCPKLLNIPEVFDEN 345

Query: 153 ---------------------------------------------------IGPLEKLPE 188
                                                              IGPLEKLPE
Sbjct: 346 NVQHLESLIVSHCNKLTKLPNGLHFCSSIQCVKCSNLSINIRNKSELCYLNIGPLEKLPE 405

The following BLAST results are available for this feature:

BLAST of IVF0013275 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q694W1	8.7e-41	38.32	Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1	[more]
Q694W4	1.1e-40	45.73	Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1	[more]
A0A4Y6JLT3	1.1e-40	45.73	Fom-2 protein (Fragment) OS=Cucumis melo var. cantalupensis OX=3658 GN=Fom-2 PE=...	[more]
A0A4Y6JLW0	1.1e-40	45.73	Fom-2 protein (Fragment) OS=Cucumis melo var. cantalupensis OX=3658 GN=Fom-2 PE=...	[more]
A0A0A0LRE1	3.3e-40	46.15	NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G435460 PE=4...	[more]

BLAST of IVF0013275 vs. NCBI nr


Match Name	E-value	Identity	Description
QDF82818.1	5.14e-50	45.73	Fom-2 protein, partial [Cucumis melo var. cantalupo]	[more]
QDF82817.1	5.14e-50	45.73	Fom-2 protein, partial [Cucumis melo var. cantalupo]	[more]
QDF82816.1	2.85e-49	45.30	Fom-2 protein, partial [Cucumis melo var. cantalupo]	[more]
AAT77094.1	7.78e-49	45.73	Fom-2 protein, partial [Cucumis melo] >AAT77095.1 Fom-2 protein, partial [Cucumi...	[more]
AAT77098.1	1.10e-48	38.32	Fom-2 protein, partial [Cucumis melo]	[more]

BLAST of IVF0013275 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 18..191 e-value: 3.6E-15 score: 57.3
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 35..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013275.2	IVF0013275.2	mRNA