IVF0013143 (gene) Melon (IVF77) v1

Overview


Name	IVF0013143
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 17056571 .. 17056996 (-)
RNA-Seq Expression	IVF0013143
Synteny	IVF0013143

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATGAAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGGAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTTTGTCTTGTATGGACGACCTTCGGAGTTTCGTACTCTTGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCATCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGAGGGATGAAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGGAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTTTGTCTTGTATGGACGACCTTCGGAGTTTCGTACTCTTGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCATCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGAGGGATGAAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGGAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGACGTTATTGCAAAGGCATCTTTTGTCTTGTATGGACGACCTTCGGAGTTTCGTACTCTTGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCATCCTACGAGACATAGAGAGATAG

Protein sequence

MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSFVLLPEDEREGFCRVILRDIER

Homology

[Close]

BLAST of IVF0013143 vs. ExPASy TrEMBL
Match: A0A5D3C8P0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00590 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.1e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 166 MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 225

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF
Sbjct: 226 DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 285

Query: 121 VLLPEDEREGFCRVILRDIER 142
           VLLPEDEREGFCRVILRDIER
Sbjct: 286 VLLPEDEREGFCRVILRDIER 306

[Close]

BLAST of IVF0013143 vs. ExPASy TrEMBL
Match: A0A5A7U8I3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00680 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.2e-72
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 166 MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 225

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRH LSCMDDLRSF
Sbjct: 226 DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHFLSCMDDLRSF 285

Query: 121 VLLPEDEREGFCRVILRDIER 142
           VLLPEDEREGFCRVILRDIER
Sbjct: 286 VLLPEDEREGFCRVILRDIER 306

[Close]

BLAST of IVF0013143 vs. ExPASy TrEMBL
Match: A0A5D3B6Y0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00160 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-67
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           M D NE+FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQL+QIAEWPA NLANDNHVRTEFFCILREMPELTSLDR LLQRHLLSCMDDLR F
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261

Query: 121 VLLPEDEREGFCRVILRDIER 142
           VL+PEDEREGFCRV+LRDIER
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282

[Close]

BLAST of IVF0013143 vs. ExPASy TrEMBL
Match: A0A5A7UZ66 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00390 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.7e-65
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           M D NE+FPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 154 MGDGNEDFPPVYSQGVDISQDDVRASRPSRAPEGRTGSSGSKRKRGSQRDFDVEAIHLAL 213

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQL+QIAEWPARNLANDNHVRTEFFCILREMPELTSLDR LLQRHLLS MDDLR F
Sbjct: 214 DQTNEQLRQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSRMDDLRGF 273

Query: 121 VLLPEDEREGFCRVILRDIER 142
           VL+PEDERE FCRV+LRDIER
Sbjct: 274 VLMPEDERERFCRVLLRDIER 294

[Close]

BLAST of IVF0013143 vs. ExPASy TrEMBL
Match: A0A5A7VJG4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001280 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.4e-65
Identity = 127/141 (90.07%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           M D N++FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLAL
Sbjct: 135 MGDGNKDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 194

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQL+QIAEWPARNLANDNHVRT+FFCILREMPELT+LDR LLQRHLLS MDDLR F
Sbjct: 195 DQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGF 254

Query: 121 VLLPEDEREGFCRVILRDIER 142
           VL+PEDEREGFCRV+LRDIER
Sbjct: 255 VLMPEDEREGFCRVLLRDIER 275

[Close]

BLAST of IVF0013143 vs. NCBI nr
Match: TYK07652.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (717), Expect = 1.02e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 166 MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 225

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF
Sbjct: 226 DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 285

Query: 121 VLLPEDEREGFCRVILRDIER 141
           VLLPEDEREGFCRVILRDIER
Sbjct: 286 VLLPEDEREGFCRVILRDIER 306

[Close]

BLAST of IVF0013143 vs. NCBI nr
Match: KAA0049911.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 279 bits (713), Expect = 4.15e-92
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 166 MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 225

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRH LSCMDDLRSF
Sbjct: 226 DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHFLSCMDDLRSF 285

Query: 121 VLLPEDEREGFCRVILRDIER 141
           VLLPEDEREGFCRVILRDIER
Sbjct: 286 VLLPEDEREGFCRVILRDIER 306

[Close]

BLAST of IVF0013143 vs. NCBI nr
Match: KAA0054705.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (676), Expect = 7.97e-87
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           M D NE+FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQL+QIAEWPA NLANDNHVRTEFFCILREMPELTSLDR LLQRHLLSCMDDLR F
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261

Query: 121 VLLPEDEREGFCRVILRDIER 141
           VL+PEDEREGFCRV+LRDIER
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282

[Close]

BLAST of IVF0013143 vs. NCBI nr
Match: KAA0058875.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (656), Expect = 1.28e-83
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           M D NE+FPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 154 MGDGNEDFPPVYSQGVDISQDDVRASRPSRAPEGRTGSSGSKRKRGSQRDFDVEAIHLAL 213

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQL+QIAEWPARNLANDNHVRTEFFCILREMPELTSLDR LLQRHLLS MDDLR F
Sbjct: 214 DQTNEQLRQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSRMDDLRGF 273

Query: 121 VLLPEDEREGFCRVILRDIER 141
           VL+PEDERE FCRV+LRDIER
Sbjct: 274 VLMPEDERERFCRVLLRDIER 294

[Close]

BLAST of IVF0013143 vs. NCBI nr
Match: KAA0065821.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 256 bits (654), Expect = 1.40e-83
Identity = 127/141 (90.07%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MRDENEEFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           M D N++FPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLAL
Sbjct: 135 MGDGNKDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 194

Query: 61  DQTNEQLKQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRTLLQRHLLSCMDDLRSF 120
           DQTNEQL+QIAEWPARNLANDNHVRT+FFCILREMPELT+LDR LLQRHLLS MDDLR F
Sbjct: 195 DQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGF 254

Query: 121 VLLPEDEREGFCRVILRDIER 141
           VL+PEDEREGFCRV+LRDIER
Sbjct: 255 VLMPEDEREGFCRVLLRDIER 275

The following BLAST results are available for this feature:

BLAST of IVF0013143 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0013143 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8P0	3.1e-72	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8I3	9.2e-72	99.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B6Y0	1.8e-67	93.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZ66	3.7e-65	90.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VJG4	6.4e-65	90.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0013143 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07652.1	1.02e-92	100.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049911.1	4.15e-92	99.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054705.1	7.97e-87	93.62	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon p...	[more]
KAA0058875.1	1.28e-83	90.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065821.1	1.40e-83	90.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0013143 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0013143.1	IVF0013143.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane