IVF0012580 (gene) Melon (IVF77) v1

Overview
NameIVF0012580
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 14507168 .. 14507395 (+)
RNA-Seq ExpressionIVF0012580
SyntenyIVF0012580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTACTGTCGACACAGTGTTCGCTTACATGGTCAACACGTCGGCATTGGAAAACTGCCGACGTTTGGTAGCGACATAGCAAATAGGTTACTATCAATGTCATCAAGTATGTCGACATACATCAACCACCGACACGGTGTCGGCAGACCTTTTGAAGACGTCGCGTCGACAGAACTTTTGACGAAGTCGCGTCGTCAGAACGACCAATTGCGACACATAATATGA

mRNA sequence

ATGGGTTACTGTCGACACAGTGTTCGCTTACATGGTCAACACGTCGGCATTGGAAAACTGCCGACGTTTGGTAGCGACATAGCAAATAGGTTACTATCAATGTCATCAAGTATGTCGACATACATCAACCACCGACACGGTGTCGGCAGACCTTTTGAAGACGTCGCGTCGACAGAACTTTTGACGAAGTCGCGTCGTCAGAACGACCAATTGCGACACATAATATGA

Coding sequence (CDS)

ATGGGTTACTGTCGACACAGTGTTCGCTTACATGGTCAACACGTCGGCATTGGAAAACTGCCGACGTTTGGTAGCGACATAGCAAATAGGTTACTATCAATGTCATCAAGTATGTCGACATACATCAACCACCGACACGGTGTCGGCAGACCTTTTGAAGACGTCGCGTCGACAGAACTTTTGACGAAGTCGCGTCGTCAGAACGACCAATTGCGACACATAATATGA

Protein sequence

MGYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHII
Homology
[Close]
BLAST of IVF0012580 vs. ExPASy TrEMBL
Match: A0A5A7TC06 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 2  GYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTE 60
          GYCR ++  HGQHV  G+LP   +DIANRLLS SS  S Y+NHR  + RP  DVAS E
Sbjct: 5  GYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIE 62

[Close]
BLAST of IVF0012580 vs. ExPASy TrEMBL
Match: A0A5A7UC12 (Transcription factor bHLH35 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33G00040 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 32/58 (55.17%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 17  IGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHI 75
           IG+L T GSD+ NRLL MS SMSTY+NHR G+ RP E            RQND LR I
Sbjct: 174 IGELSTSGSDVVNRLLPMSKSMSTYMNHRRGIDRPSE---------MPHRQNDHLRCI 222

[Close]
BLAST of IVF0012580 vs. NCBI nr
Match: KAA0040613.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK05657.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.18e-12
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 2  GYCRHSVRLHGQHVGIGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTE 59
          GYCR ++  HGQHV  G+LP   +DIANRLLS SS  S Y+NHR  + RP  DVAS E
Sbjct: 5  GYCRCTIHRHGQHVDSGELPMSNNDIANRLLSTSSCTSAYMNHRGSIDRPSNDVASIE 62

[Close]
BLAST of IVF0012580 vs. NCBI nr
Match: KAA0052854.1 (transcription factor bHLH35 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.86e-08
Identity = 32/58 (55.17%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 17  IGKLPTFGSDIANRLLSMSSSMSTYINHRHGVGRPFEDVASTELLTKSRRQNDQLRHI 74
           IG+L T GSD+ NRLL MS SMSTY+NHR G+ RP E            RQND LR I
Sbjct: 174 IGELSTSGSDVVNRLLPMSKSMSTYMNHRRGIDRPSE---------MPHRQNDHLRCI 222

The following BLAST results are available for this feature:
BLAST of IVF0012580 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0012580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TC064.1e-1058.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7UC121.0e-0555.17Transcription factor bHLH35 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of IVF0012580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040613.11.18e-1258.62Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0052854.14.86e-0855.17transcription factor bHLH35 [Cucumis melo var. makuwa][more]
BLAST of IVF0012580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0012580.1IVF0012580.1mRNA