IVF0012477 (gene) Melon (IVF77) v1

Overview


Name	IVF0012477
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 9166426 .. 9166719 (+)
RNA-Seq Expression	IVF0012477
Synteny	IVF0012477

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAGTTCTCGACTTCACGCGACGACGGACGAAGGGAAACGCGAGGAGACGATAGAGGTTGTCTGCGTCTCAGCTCAGGTCCTTCTGGGTTGCATCGGACGGTGTACGGAGAAGGGAAACGACAACGACGCCTGCACCGCAAGGAGGCGTCGACGTCCGACGCTGGGTTTGGCAGAAACCGGAGGCCAAAGTCGAAAAGAGGGGATCGGGAATGGAGCTGTCGCACGTCGGTGTTGCGCGGCTGACAACGTTCAACTGAGGCAGAGACGGCCGGCTAGGCTTCGCGGATGA

mRNA sequence

ATGACTAGTTCTCGACTTCACGCGACGACGGACGAAGGGAAACGCGAGGAGACGATAGAGGTTGTCTGCGTCTCAGCTCAGGTCCTTCTGGGTTGCATCGGACGGTGTACGGAGAAGGGAAACGACAACGACGCCTGCACCGCAAGGAGGCGTCGACGTCCGACGCTGGGTTTGGCAGAAACCGGAGGCCAAAGTCGAAAAGAGGGGATCGGGAATGGAGCTGTCGCACGTCGGTGTTGCGCGGCTGACAACGTTCAACTGAGGCAGAGACGGCCGGCTAGGCTTCGCGGATGA

Coding sequence (CDS)

ATGACTAGTTCTCGACTTCACGCGACGACGGACGAAGGGAAACGCGAGGAGACGATAGAGGTTGTCTGCGTCTCAGCTCAGGTCCTTCTGGGTTGCATCGGACGGTGTACGGAGAAGGGAAACGACAACGACGCCTGCACCGCAAGGAGGCGTCGACGTCCGACGCTGGGTTTGGCAGAAACCGGAGGCCAAAGTCGAAAAGAGGGGATCGGGAATGGAGCTGTCGCACGTCGGTGTTGCGCGGCTGACAACGTTCAACTGAGGCAGAGACGGCCGGCTAGGCTTCGCGGATGA

Protein sequence

MTSSRLHATTDEGKREETIEVVCVSAQVLLGCIGRCTEKGNDNDACTARRRRRPTLGLAETGGQSRKEGIGNGAVARRCCAADNVQLRQRRPARLRG

Homology

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BLAST of IVF0012477 vs. NCBI nr
Match: KAA0043523.1 (hypothetical protein E6C27_scaffold335G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 3.25e-05
Identity = 26/44 (59.09%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 2   TSSRLHATTDEGKREETIEVVCVSAQVLLGCIGRCTEKGNDNDA 45
           T+SRLHATTDEGK    +E+VC  A+VLL C  R TEKG    A
Sbjct: 93  TNSRLHATTDEGKCVGMVEIVCDLARVLLDCFERRTEKGTTKTA 136

The following BLAST results are available for this feature:

BLAST of IVF0012477 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012477 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0012477 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043523.1	3.25e-05	59.09	hypothetical protein E6C27_scaffold335G00170 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0012477 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..32 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012477.1	IVF0012477.1	mRNA