IVF0012269 (gene) Melon (IVF77) v1

Overview


Name	IVF0012269
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Homologous-pairing protein 2 homolog
Location	chr10: 1544157 .. 1546350 (-)
RNA-Seq Expression	IVF0012269
Synteny	IVF0012269

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAGGCTATATTTTGCACTTCGGCTTCTTGAAGAAGCCAGGGAAAGCACTAGGCAAAGTTTCCCGCCCATTTCTCTTCACTCTAATCCATCAATGGCTCCCAAATCCGATAGCGCAGAAGGTGAACACTTGCATCGATCTTTTGAACTGTTGCTCACATGAATTCCTATTTACAATTTTGATTTCAGTTTTGGATTTATGATGTCTTCAATGTTGCATATCCTTCAATCTTACTTTGTTTCTATAATTTCCAGCGATCGTGCTCAACTTCGTAAACGAGGTACTTGTTTCATCGCCGTGCTTCGTGATTTATCTGTTTATCCATTGAGCGTTTGCAAATTCTTTTGTTTTCTTGCTATTCTTCAAGTGTGTGTAGTTTCGTTTTCCCTCTTCTGCGCTTATTGCAGCGAAGATTGCAAGTTTTTTGCGCTGTGTAGTACTTATACCATCCTTTTGTTTAGCTGTAACCCTAATTTGTACATAGAAGAACTTCGATCTTCATCGATTGAGTGTTGGCGAACACACACTATTTAGAACTCATGTTATTTTCTCAAGAAGCGATTTGTTTCTGTGGATCTCCATTTCGATGTTTATTGTGTTTTCAGTTTCATTATGAAACTCATGCATCAGTCCTATCATTTTCTATTCTCTGGCGAGGCCTTTTGTGCTTTCCTGTCTAAAGGCATGTGCCATATTTTTGTTCTGTTCAGCAAAATCGTCCACTGAACTCCCAAAATGCAGCCGATTCATTACAAAAGTTCAATCTCAAGAAAACGGCGGTGCAAAAGGCACTGGATTCCCTCGCCGACACTGGACGGATTTCTTTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTTCAGATCCCCAACAGTGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGAAACATCTAGACGAGCACAAAAAGGCTATTAGTCAGGTTGAGGAAGGTAATGACACTAGGAAATTTCCAAGTAGCCCTCAATGATGTAAATGTTATGTATCACTTGAGCCGTCTCAGTTATGGTATTTAAGTTTCGAGAAATGAAAATAATCGCAACGTGATTTTTTGTAACAGAAATCCGAACATTGCAGTCAAACTTAACTCTGGAACAAATGCGGGAAAAGGAAGTTATGCTCAGAAAGGAGGTAGACGGACGCTAAATCAGATAGCTGTGACTTTATTCTGATCAGTGATATTGTTACCTTTATCTCTTGTTAATGTCTGAAAAGTAACTTGTTTGATAAATGCTTGTCAGGTTAAGGAATTGGAAGACAAATTAGAAGTATTGCGCAGAGGTGTAACGTTGGTGAGCCCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCACCCAAGGATTTAAAAGAATTTAAGGTTCGTCATTTTGCTTGTCCCCCTTTTTACTCAAGTTGTTCAGATTACTTACTTTTTATTTTTGCAGGAAGAACTTGGCATCGAATACGATGAAGATGTGGGCGTGAACTTGCAGTCATTTAGCGATATGTTACCACAAAATCGAAAGAGGCCCAGGGGTAAGTGAGTGACACCATAAACTGGGGCGTCCAACTATAGTAAGTAAGAGCAGAATTATTTGCTTATATTACTTTTCTTTATTCAATCCGTTCGTAAAAGGCAAATACATGTAGAGTCTGTCTGCCTAAAGCTTTGCTTTTGTATCACGGATACTCACCAAATTGCTTTCCGTTGATTCATCCCAAGTTGAAGGCAACATTTATTTACTATACTGCTGAGTAAAGAAACTGCCCTCCTTCACAATGTTTTTTTTACCTTATACTAATATTTACATGGTCAATGAGATACTTTCCCTCAATTGACTGTGAACTAAACTTATAATACTTGTGCAATAGAAGAGGTAATGTTCTCTGCTGTTGAATGAACTCAAGAAGAAAGATTTATTTCTTATCTGCACTATGTTGTACAGCCTTTAGCCTCATGGGTGCCCGATAAGTTTTCATTTCAGAGGAAAATAAGGAAATCAGTGTTCCATTCCTTGGATAGACGAGGAGGAAACTGCGATGTTACATTATAGTTCAATAGATTATAAGTTACCAAAATTGTACCACTGTACAA

mRNA sequence

ATTAAGGCTATATTTTGCACTTCGGCTTCTTGAAGAAGCCAGGGAAAGCACTAGGCAAAGTTTCCCGCCCATTTCTCTTCACTCTAATCCATCAATGGCTCCCAAATCCGATAGCGCAGAAGCGATCGTGCTCAACTTCGTAAACGAGCAAAATCGTCCACTGAACTCCCAAAATGCAGCCGATTCATTACAAAAGTTCAATCTCAAGAAAACGGCGGTGCAAAAGGCACTGGATTCCCTCGCCGACACTGGACGGATTTCTTTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTTCAGATCCCCAACAGTGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGAAACATCTAGACGAGCACAAAAAGGCTATTAGTCAGGTTGAGGAAGAAATCCGAACATTGCAGTCAAACTTAACTCTGGAACAAATGCGGGAAAAGGAAGTTATGCTCAGAAAGGAGGTTAAGGAATTGGAAGACAAATTAGAAGTATTGCGCAGAGGTGTAACGTTGGTGAGCCCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCACCCAAGGATTTAAAAGAATTTAAGGAAGAACTTGGCATCGAATACGATGAAGATGTGGGCGTGAACTTGCAGTCATTTAGCGATATGTTACCACAAAATCGAAAGAGGCCCAGGGGTAAGTGAGTGACACCATAAACTGGGGCGTCCAACTATAGTAAGTAAGAGCAGAATTATTTGCTTATATTACTTTTCTTTATTCAATCCGTTCGTAAAAGGCAAATACATGTAGAGTCTGTCTGCCTAAAGCTTTGCTTTTGTATCACGGATACTCACCAAATTGCTTTCCGTTGATTCATCCCAAGTTGAAGGCAACATTTATTTACTATACTGCTGAGTAAAGAAACTGCCCTCCTTCACAATGTTTTTTTTACCTTATACTAATATTTACATGGTCAATGAGATACTTTCCCTCAATTGACTGTGAACTAAACTTATAATACTTGTGCAATAGAAGAGGTAATGTTCTCTGCTGTTGAATGAACTCAAGAAGAAAGATTTATTTCTTATCTGCACTATGTTGTACAGCCTTTAGCCTCATGGGTGCCCGATAAGTTTTCATTTCAGAGGAAAATAAGGAAATCAGTGTTCCATTCCTTGGATAGACGAGGAGGAAACTGCGATGTTACATTATAGTTCAATAGATTATAAGTTACCAAAATTGTACCACTGTACAA

Coding sequence (CDS)

ATGGCTCCCAAATCCGATAGCGCAGAAGCGATCGTGCTCAACTTCGTAAACGAGCAAAATCGTCCACTGAACTCCCAAAATGCAGCCGATTCATTACAAAAGTTCAATCTCAAGAAAACGGCGGTGCAAAAGGCACTGGATTCCCTCGCCGACACTGGACGGATTTCTTTCAAGGAGTATGGCAAGCAGAAGATATATATCGCTCGGCAAGACCAATTTCAGATCCCCAACAGTGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGAAACATCTAGACGAGCACAAAAAGGCTATTAGTCAGGTTGAGGAAGAAATCCGAACATTGCAGTCAAACTTAACTCTGGAACAAATGCGGGAAAAGGAAGTTATGCTCAGAAAGGAGGTTAAGGAATTGGAAGACAAATTAGAAGTATTGCGCAGAGGTGTAACGTTGGTGAGCCCAGAAGACCGCAAAGCAATTGAGCAGATATACTCTGAGAAATTAAGCCAGTGGCGAAAGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAACTCACCCAAGGATTTAAAAGAATTTAAGGAAGAACTTGGCATCGAATACGATGAAGATGTGGGCGTGAACTTGCAGTCATTTAGCGATATGTTACCACAAAATCGAAAGAGGCCCAGGGGTAAGTGA

Protein sequence

MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEYGKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQMREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWDAITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK

Homology

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BLAST of IVF0012269 vs. ExPASy Swiss-Prot
Match: Q9FX64 (Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.1e-91
Identity = 167/226 (73.89%), Postives = 203/226 (89.82%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSD+ EAIVLNFVNEQN+PLN+QNAAD+LQKFNLKKTAVQKALDSLAD G+I+FKEY
Sbjct: 1   MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQF+IPNSEEL QMKE NAKLQ+ L E KK IS VE EI++LQSNLTLE+
Sbjct: 61  GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           ++EK+  LRKEVKE+E+KL  LR G+TLV PED+KA+E +Y++K++QWRKRKRMF+DIWD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            +TENSPKD+KE KEELGIEYDEDVG++ Q+++D++   +KRPRG+
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRGQ 226

[Close]

BLAST of IVF0012269 vs. ExPASy Swiss-Prot
Match: Q63ZL2 (Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 81/210 (38.57%), Postives = 126/210 (60.00%), Query Frame = 0


Query: 4   KSDSAEAIVLNFVNEQNRPLNSQNAADSLQK-FNLKKTAVQKALDSLADTGRISFKEYGK 63
           K  +A +I+L ++N+QNRP ++Q+   +LQ+   L KTAV K ++ LA  G+I  K YGK
Sbjct: 5   KEAAASSIILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKTMELLAQKGKIKEKVYGK 64

Query: 64  QKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQMR 123
           QKIY A Q+QF   +  EL  +     +L   L   +++  Q+E E++ L S+LT E+M 
Sbjct: 65  QKIYFADQEQFPSVSDSELKDLDAQVTELSSKLQSSQQSCRQLESELKDLTSSLTTEEML 124

Query: 124 EKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEK---LSQWRKRKRMFKDIW 183
           ++   L++E    E KL  ++     V+P ++   E++Y E+     +W+KRKRM  DI+
Sbjct: 125 KEVSCLKEECDRHEHKLTNIKSATNHVTPAEK---EKVYGERKHFCKEWKKRKRMATDIF 184

Query: 184 DAITENSPKDLKEFKEELGIEYDEDVGVNL 210
           DAI E  PK  K+F EE+G+E DED  V +
Sbjct: 185 DAILEGYPKSKKQFFEEVGVETDEDCNVTV 211

[Close]

BLAST of IVF0012269 vs. ExPASy Swiss-Prot
Match: Q91ZY6 (Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 80/209 (38.28%), Postives = 120/209 (57.42%), Query Frame = 0


Query: 2   APKSDSAEAIVLNFVNEQNRPLNSQNAADSLQK-FNLKKTAVQKALDSLADTGRISFKEY 61
           A  +  A  IVL ++ EQNRP ++Q+   +LQK   L K AV KALD LA  G+I  K Y
Sbjct: 6   AEAAAGAPGIVLRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQQGKIKEKTY 65

Query: 62  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 121
           GKQKIY A QDQF   +  +L  +  +   L   +   +++   +E E++ L S LT  +
Sbjct: 66  GKQKIYFADQDQFDTVSDADLHSLDASIMALTAKVQGLQQSCRHMEAELKELTSALTTPE 125

Query: 122 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 181
           M+ +   L+KE     ++L+ ++     V+PE+++ + +   +   +WRKRKRM  ++ D
Sbjct: 126 MQTEIQELKKECARYTERLKNIKAATNHVTPEEKEKVYRERQKYCKEWRKRKRMTTELCD 185

Query: 182 AITENSPKDLKEFKEELGIEYDEDVGVNL 210
           AI E  PK  K+F EE+GIE DED  V L
Sbjct: 186 AILEGYPKSKKQFFEEVGIETDEDHNVTL 214

[Close]

BLAST of IVF0012269 vs. ExPASy Swiss-Prot
Match: O35047 (Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.8e-27
Identity = 78/209 (37.32%), Postives = 122/209 (58.37%), Query Frame = 0


Query: 2   APKSDSAEAIVLNFVNEQNRPLNSQNAADSLQK-FNLKKTAVQKALDSLADTGRISFKEY 61
           A  +  A  I+L ++ EQNRP ++Q+   +LQK   L K AV KALD LA  G+I  K Y
Sbjct: 6   AEAAAGAPGIILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTY 65

Query: 62  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 121
           GKQKIY A Q+QF   +  +L  +  +   L   +   +++   +E E++ L S LT  +
Sbjct: 66  GKQKIYFADQNQFDTVSDADLHGLDASIVALTAKVQSLQQSCRHMEAELKELTSALTTPE 125

Query: 122 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 181
           M+++   L+KE  +  ++L+ ++     V+PE+++ + +   +   +WRKRKRM  ++ D
Sbjct: 126 MQKEIQELKKECAQYTERLKNIKAATNHVTPEEKEKVYRDRQKYCKEWRKRKRMTTELCD 185

Query: 182 AITENSPKDLKEFKEELGIEYDEDVGVNL 210
           AI E  PK  K+F EE+GIE DED  V L
Sbjct: 186 AILEGYPKSKKQFFEEVGIETDEDHNVLL 214

[Close]

BLAST of IVF0012269 vs. ExPASy Swiss-Prot
Match: Q9P2W1 (Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-26
Identity = 80/212 (37.74%), Postives = 121/212 (57.08%), Query Frame = 0


Query: 2   APKSDSAEAIVLNFVNEQNRPLNSQNAADSLQK-FNLKKTAVQKALDSLADTGRISFKEY 61
           A  +  A  I+L ++ EQNRP +SQ+   +LQ+   L K  V K L+ LA  G+I  K Y
Sbjct: 6   AEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMY 65

Query: 62  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 121
           GKQKIY A QDQF + +  +L  +      L   +   +++   +E E++ L S LT  +
Sbjct: 66  GKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPE 125

Query: 122 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEK---LSQWRKRKRMFKD 181
           M+++   L+KE     ++L+ ++     V+PE++   EQ+Y E+     +WRKRKRM  +
Sbjct: 126 MQKEIQELKKECAGYRERLKNIKAATNHVTPEEK---EQVYRERQKYCKEWRKRKRMATE 185

Query: 182 IWDAITENSPKDLKEFKEELGIEYDEDVGVNL 210
           + DAI E  PK  K+F EE+GIE DED  V L
Sbjct: 186 LSDAILEGYPKSKKQFFEEVGIETDEDYNVTL 214

[Close]

BLAST of IVF0012269 vs. ExPASy TrEMBL
Match: A0A1S3BG28 (Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.4e-116
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY
Sbjct: 40  MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 99

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 100 GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 159

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 160 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 219

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 220 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 265

[Close]

BLAST of IVF0012269 vs. ExPASy TrEMBL
Match: A0A5A7SYM2 (Homologous-pairing protein 2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00850 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.4e-116
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of IVF0012269 vs. ExPASy TrEMBL
Match: A0A1S3BG80 (Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY
Sbjct: 40  MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 99

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 100 GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 159

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 160 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 219

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRG 226
           AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRG
Sbjct: 220 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRG 264

[Close]

BLAST of IVF0012269 vs. ExPASy TrEMBL
Match: A0A0A0KWE5 (Homologous-pairing protein 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_5G608540 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.2e-111
Identity = 218/226 (96.46%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRP+NSQNAADSLQKFNLKKTAVQKALDSLAD+GRISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPINSQNAADSLQKFNLKKTAVQKALDSLADSGRISFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQK L EHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKQLGEHKKAISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKE MLR EVKELE+KLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 121 MREKEAMLRMEVKELEEKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENS KDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSSKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of IVF0012269 vs. ExPASy TrEMBL
Match: A0A6J1JDK5 (Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111483540 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.8e-106
Identity = 207/226 (91.59%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQN ADSLQKFNLKKT VQKALD+LAD+GRISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADSLQKFNLKKTGVQKALDALADSGRISFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF+IPNSEELTQMKEANAKLQ+HL E KKAI+QVEEEIRTLQSNLTL++
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQHLAEQKKAITQVEEEIRTLQSNLTLKE 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKE MLRKEVKELE+KLE LR GVTLVSPEDRKAIEQIYSEKL QWRKRKRMFKDIWD
Sbjct: 121 MREKEAMLRKEVKELEEKLETLRGGVTLVSPEDRKAIEQIYSEKLGQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPK+LKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 VITENSPKNLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of IVF0012269 vs. NCBI nr
Match: KAA0034541.1 (homologous-pairing protein 2-like protein isoform X1 [Cucumis melo var. makuwa] >TYK09095.1 homologous-pairing protein 2-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 420 bits (1080), Expect = 1.12e-147
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226
           AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of IVF0012269 vs. NCBI nr
Match: XP_008446584.1 (PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo] >XP_008446586.1 PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo] >XP_008446587.1 PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 420 bits (1080), Expect = 4.53e-147
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY
Sbjct: 40  MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 99

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 100 GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 159

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 160 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 219

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226
           AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 220 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 265

[Close]

BLAST of IVF0012269 vs. NCBI nr
Match: XP_008446588.1 (PREDICTED: homologous-pairing protein 2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 418 bits (1075), Expect = 2.62e-146
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY
Sbjct: 40  MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 99

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 100 GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 159

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 160 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 219

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRG 225
           AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRG
Sbjct: 220 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRG 264

[Close]

BLAST of IVF0012269 vs. NCBI nr
Match: XP_038893461.1 (homologous-pairing protein 2 homolog [Benincasa hispida])

HSP 1 Score: 407 bits (1046), Expect = 1.70e-142
Identity = 217/226 (96.02%), Postives = 223/226 (98.67%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALD+LAD+GRISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDALADSGRISFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQ+HLDEHKK ISQVEEEIRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQQHLDEHKKVISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKE MLRKEVKELEDKLE+LR GVTLVSPEDRKAIEQI+SEKLSQWRKRKRMFKDIWD
Sbjct: 121 MREKEAMLRKEVKELEDKLEILRGGVTLVSPEDRKAIEQIFSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226
           AITENSPKDLK+FKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSPKDLKDFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of IVF0012269 vs. NCBI nr
Match: XP_004135104.1 (homologous-pairing protein 2 homolog [Cucumis sativus] >KGN52066.1 hypothetical protein Csa_008124 [Cucumis sativus])

HSP 1 Score: 404 bits (1037), Expect = 4.00e-141
Identity = 218/226 (96.46%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRP+NSQNAADSLQKFNLKKTAVQKALDSLAD+GRISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPINSQNAADSLQKFNLKKTAVQKALDSLADSGRISFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQFQIPNSEELTQMKEANAKLQK L EHKKAISQVEEEIRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKQLGEHKKAISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           MREKE MLR EVKELE+KLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD
Sbjct: 121 MREKEAMLRMEVKELEEKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226
           AITENS KDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSSKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of IVF0012269 vs. TAIR 10
Match: AT1G13330.1 (Arabidopsis Hop2 homolog )

HSP 1 Score: 336.7 bits (862), Expect = 1.5e-92
Identity = 167/226 (73.89%), Postives = 203/226 (89.82%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60
           MAPKSD+ EAIVLNFVNEQN+PLN+QNAAD+LQKFNLKKTAVQKALDSLAD G+I+FKEY
Sbjct: 1   MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60

Query: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120
           GKQKIYIARQDQF+IPNSEEL QMKE NAKLQ+ L E KK IS VE EI++LQSNLTLE+
Sbjct: 61  GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120

Query: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180
           ++EK+  LRKEVKE+E+KL  LR G+TLV PED+KA+E +Y++K++QWRKRKRMF+DIWD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180

Query: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            +TENSPKD+KE KEELGIEYDEDVG++ Q+++D++   +KRPRG+
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRGQ 226

The following BLAST results are available for this feature:

BLAST of IVF0012269 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX64	2.1e-91	73.89	Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=...	[more]
Q63ZL2	1.7e-29	38.57	Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 S...	[more]
Q91ZY6	1.6e-27	38.28	Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE...	[more]
O35047	4.8e-27	37.32	Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV...	[more]
Q9P2W1	3.1e-26	37.74	Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=...	[more]

BLAST of IVF0012269 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BG28	4.4e-116	100.00	Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=...	[more]
A0A5A7SYM2	4.4e-116	100.00	Homologous-pairing protein 2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BG80	1.7e-115	100.00	Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=...	[more]
A0A0A0KWE5	4.2e-111	96.46	Homologous-pairing protein 2 homolog OS=Cucumis sativus OX=3659 GN=Csa_5G608540 ...	[more]
A0A6J1JDK5	1.8e-106	91.59	Homologous-pairing protein 2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111483540...	[more]

BLAST of IVF0012269 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034541.1	1.12e-147	100.00	homologous-pairing protein 2-like protein isoform X1 [Cucumis melo var. makuwa] ...	[more]
XP_008446584.1	4.53e-147	100.00	PREDICTED: homologous-pairing protein 2 homolog isoform X1 [Cucumis melo] >XP_00...	[more]
XP_008446588.1	2.62e-146	100.00	PREDICTED: homologous-pairing protein 2 homolog isoform X2 [Cucumis melo]	[more]
XP_038893461.1	1.70e-142	96.02	homologous-pairing protein 2 homolog [Benincasa hispida]	[more]
XP_004135104.1	4.00e-141	96.46	homologous-pairing protein 2 homolog [Cucumis sativus] >KGN52066.1 hypothetical ...	[more]

BLAST of IVF0012269 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13330.1	1.5e-92	73.89	Arabidopsis Hop2 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..145
IPR040661	Leucine zipper with capping helix domain	PFAM	PF18517	LZ3wCH	coord: 149..206 e-value: 5.0E-19 score: 68.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..79 e-value: 7.8E-23 score: 82.2
IPR010776	Homologous-pairing protein 2, winged helix domain	PFAM	PF07106	TBPIP	coord: 8..68 e-value: 1.7E-25 score: 88.7
IPR040461	Homologous-pairing protein 2	PANTHER	PTHR15938	TBP-1 INTERACTING PROTEIN	coord: 1..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012269.2	IVF0012269.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	homologous chromosome pairing at meiosis
biological_process	GO:0000709	meiotic joint molecule formation
biological_process	GO:0010774	meiotic strand invasion involved in reciprocal meiotic recombination
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0120231	DNA recombinase auxiliary factor complex
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0120230	recombinase activator activity