IVF0012183 (gene) Melon (IVF77) v1

Overview


Name	IVF0012183
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	exosome complex component RRP41-like
Location	chr11: 25235493 .. 25238855 (-)
RNA-Seq Expression	IVF0012183
Synteny	IVF0012183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTAACCCCTTGTCTGGCGCCCTCACCGGCTTCCAAGGTTCAATTTCCCAATCGTTGGCTCCTCGGTCTCTACCAAAACACACATACTCCTTTCAATCTCTTTGAACTCTTAATAGAAACCGATCGATTCTGGGTTTTGTGTTCATTACCTTCACGGCCTCAGGTACCATTTATTTTTTAAATTATTTCTAGGTTTTGAACCCTAAATTCTGATTTTGATTGCCAGTTTTCTTTTGTCAAAATGTAGCTTTTTTGCTTTTTTTTTCTTTTCTTTTTTTGTGTTTTTTCATGGACTGAAGCCCTTCCTTGTGTGCCAAACCTCAGGAAATTTGTGGCGGAGCTTTCTAACTTGTCATCGGAGTCATTCATTGAGGTTCCGAATGGCCAAAAAAGCGACACCAACTACCACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCACCAATGCCGGCCTGCTTGTATAGACTTTTGCCCGTTTCTGCTTTTCTCATTTGCTCTGTCTTGCTGCTCCTCACCAATATGTCGTTAGATTATTGTTTCATTTAATGTCTGTTTGAGGTCATTGTTTCTTGTTGCTGCTAGTTTGAGGTTATTGTTCTCGATCAGTTTATCCTAAGTACCGAGCAATCTCGAGACCACGTAATCAAATTTGCTCTGTATTTGTATGCTTATGATGTCTTTTCCACCATGATGGTTCTGTTCAGGATCCCTCGTGGAGATAGATGAGCTACTTTTCCCACTGTCAATTTATTTTGAGATGGAGCCATGTTATCTAATAGGCTTGAGAATCTTAGTTTATCTAATAGCTATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATCTTAATAAACAAGCATCGACTGAGAAGTAGGAAATGACATGGTTAAGAATGTGGTGTCTTGACTCTCGACATTGAAGTCTAACTGGAAGGTTCTCCCTTTGGGGCGTGATTCAGTTGAGTTAGTAGTTGATCATAGAGTCCTCGAGGGTTTTGAACATATGTTACTTTACTTGGTGGTTTTGACATTTTTGTTGTTGAATCTTGAAAAAATATCATCTGTTTAGAAACTGAAGTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGTGCTCTTTGTAACTTCTAGGTTTCTCTTTGATGATGAGAGTTTGAGCGCCAGTGTCTAATCCAATTGGTTGCCCATTTGATGAATTTTCTGTTCCTTTCTTTTATCATTTAAATCATTTGCTGCTTCTCTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACCCCTCTTCTTCTATATAGTTTATAATTTTATACTGCTGTCATTTGACTATTTCCTTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGAGTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAAACATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTAGAATCTGGAGGCAGTAAGTATAGAATTTTTTCGATGGATAATCTGATCTATAAGATGACTTTACCGTGAAGAAGATGGACTATTACGGTTAATGAATATGAACAGTATTCAAAGCTTATTTGCATGTGGGGGTACGATGACTTGTAATTTTGAAGTAGAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTTACATATTTTAATCTCATTACATTATGGAAACTTCAGTTGCTGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTTTTGGGCTGCATGACTATTTATTATCAATGGCTTTCATGCCAAGGTATCCATGATGTAATTTCTGTCCGTACCGGCATCAAGTTGGATCCATATCCAACCATTTTTCTCCACAGCTCCCTGCATTACCCTCAGATTTTCTACTTTTTATGTAAATTACAGTATGCAACTAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTCGTTGCCTCGGTTTCTGTGGTATGCATGTGCACATTCTCAAGTTTCCGGTTTCTTCTACAACTAATTTTGTATTTCTAGGCTTCTAGCATTAAACCTATCCTCAACAAGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTCTTTGATTACAAAGGGGTATGAAAGTATACAGTTATTCAGGTTGCTGATGATTGAATCCTAAAAGTAGGAAAATGTAGTTCTCTGTGTTCTCTGGCCTATTTTCTCCTCTCTGATACCGAGGAAGATATTTTTCTGCACAAAATGACCTTTCGCATCGGCTGTCTTGATGGCAGAACTTCATTTTTTATTTTACTTTTGGGTTCTGTTTCCAACAAGCACTGATGGATCTTTATTCTATCGTGATATGTAACTGTTGGTGTCTACCATATGAATTACTATTTTAAGTTCTCATACATTTCTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGCGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTTTAACTTCGCATTTCTTCTGAAGGAAGTTTTTAGTACTAAAACAGCATCCGATAATGGTCTTTCTTGTTTGTTTGTTTTTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGTAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCGGCCGCCACCATTTCAGAGGAATGAACAAAAAGAGTAATGTCTAATGTTATCTCTTTTTAGTTTTAATAGAGAAATCTCAACATCCCTTCCCCTTCCATCCCCAATTTTGATGAGAATGAAAAATATGTAAAATCTTTGGAAAATGGTTGATTTGAATTTTGCATAAAAGTAAAAGGTAGCAGAGAAGTTTTCATTTGGTTGGTGGCTGACCACAGAAAAACAATTCCAAT

mRNA sequence

GAATTAACCCCTTGTCTGGCGCCCTCACCGGCTTCCAAGGTTCAATTTCCCAATCGTTGGCTCCTCGGTCTCTACCAAAACACACATACTCCTTTCAATCTCTTTGAACTCTTAATAGAAACCGATCGATTCTGGGTTTTGTGTTCATTACCTTCACGGCCTCAGGAAATTTGTGGCGGAGCTTTCTAACTTGTCATCGGAGTCATTCATTGAGGTTCCGAATGGCCAAAAAAGCGACACCAACTACCACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAAACATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTAGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTCGTTGCCTCGGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGCGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGTAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCGGCCGCCACCATTTCAGAGGAATGAACAAAAAGAGTAATGTCTAATGTTATCTCTTTTTAGTTTTAATAGAGAAATCTCAACATCCCTTCCCCTTCCATCCCCAATTTTGATGAGAATGAAAAATATGTAAAATCTTTGGAAAATGGTTGATTTGAATTTTGCATAAAAGTAAAAGGTAGCAGAGAAGTTTTCATTTGGTTGGTGGCTGACCACAGAAAAACAATTCCAAT

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAACTACCACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCACCCCTCTTCAGAACCGACGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCACCAATGCCGGCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGAGTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAAACATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTAGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTCGTTGCCTCGGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATCCTATATTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATTACAGGCGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGTAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCGGCCGCCACCATTTCAGAGGAATGA

Protein sequence

MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE

Homology

[Close]

BLAST of IVF0012183 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.5e-104
Identity = 185/249 (74.30%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 10  TTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNT 69
           T TYSP   V ++R P+F+  D++W RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNT
Sbjct: 9   TPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNT 68

Query: 70  KVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKSLEGAII 129
           KVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++KE+SSMLHK+LEG I+
Sbjct: 69  KVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIM 128

Query: 130 LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID 189
           +ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+ID
Sbjct: 129 METFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMID 188

Query: 190 PILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 249
           P+ EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL EIMR CL
Sbjct: 189 PVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCL 248

Query: 250 KESAATISE 259
           K+SA+   E
Sbjct: 249 KQSASASDE 256

[Close]

BLAST of IVF0012183 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.8e-31
Identity = 84/222 (37.84%), Postives = 122/222 (54.95%), Query Frame = 0


Query: 40  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVS 99
           RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C   
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 100 YTTFSTPVRG---QGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPVV 159
              FS   RG   QGSE ++ S+ L +SL   + L  +P++ +DV  +VLE+ GS L   
Sbjct: 97  LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHA 156

Query: 160 ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEE------ENYQD--GSLMITCM 219
           ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +
Sbjct: 157 VTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALL 216

Query: 220 PSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 250
           P+  +V+ L   GE     + E M+ C+D   KL  +++  L
Sbjct: 217 PNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

[Close]

BLAST of IVF0012183 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.9e-29
Identity = 82/241 (34.02%), Postives = 127/241 (52.70%), Query Frame = 0


Query: 23  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 82
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63

Query: 83  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKSLEGAIILETFPKTTV 142
            K +   D   L    +   FS   R   G    + E S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123

Query: 143 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQ 202
           DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYG 183

Query: 203 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE 260
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE    I++
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]

BLAST of IVF0012183 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-28
Identity = 81/241 (33.61%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 23  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 82
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63

Query: 83  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKSLEGAIILETFPKTTV 142
            K +   D   L    +   FS   R   G    + E S ++  +LE A+ILE FP+T++
Sbjct: 64  SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123

Query: 143 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQ 202
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 203 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE 260
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE    I++
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]

BLAST of IVF0012183 vs. ExPASy Swiss-Prot
Match: B6YSI2 (Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=523850 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-28
Identity = 80/241 (33.20%), Postives = 125/241 (51.87%), Query Frame = 0


Query: 23  RPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 82
           +P   +  D N  R DGR  ++ RP     G +  A GSAY E+G  K++ +V+GPRE  
Sbjct: 4   KPEDLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63

Query: 83  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKEFSSMLHKSLEGAIILETFPKTTV 142
            K +   D   L    +   FS   R   G    + E S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123

Query: 143 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQ 202
           D+F  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 203 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISE 260
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE    I+E
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAE 243

[Close]

BLAST of IVF0012183 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.6e-141
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 260
           LVEIMRSCLKESAATISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of IVF0012183 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.3e-136
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP TTTTYSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATP-TTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 260
           LVEIMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAVTISEE 258

[Close]

BLAST of IVF0012183 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.0e-133
Identity = 245/259 (94.59%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP  T+TYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATP-ATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 260
           LV IMRSCLKESAAT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]

BLAST of IVF0012183 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.0e-133
Identity = 245/259 (94.59%), Postives = 252/259 (97.30%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP  TTTYSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATP-ATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 260
           LV IMRSCLKESAAT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]

BLAST of IVF0012183 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.4e-131
Identity = 241/259 (93.05%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP  TTTYSPSPT+HKTRPP+FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATP-ATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDP+LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 260
           LV+IMRSCLKES ATIS++
Sbjct: 241 LVKIMRSCLKES-ATISQD 257

[Close]

BLAST of IVF0012183 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo])

HSP 1 Score: 509 bits (1312), Expect = 6.05e-182
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 259
           LVEIMRSCLKESAATISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of IVF0012183 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus])

HSP 1 Score: 493 bits (1268), Expect = 2.98e-175
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTT-YSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 259
           LVEIMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAVTISEE 258

[Close]

BLAST of IVF0012183 vs. NCBI nr
Match: XP_038900607.1 (exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900608.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900609.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida])

HSP 1 Score: 484 bits (1247), Expect = 4.73e-172
Identity = 247/259 (95.37%), Postives = 254/259 (98.07%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPT+ KTRPP+FRT DV+WVR DGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTT-YSPSPTIQKTRPPIFRTGDVDWVRSDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAI+LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPTLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 259
           LVEIMRSCLKESAATISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 258

[Close]

BLAST of IVF0012183 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 483 bits (1244), Expect = 1.36e-171
Identity = 245/259 (94.59%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP T+T YSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPATST-YSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 259
           LV IMRSCLKESAAT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]

BLAST of IVF0012183 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima])

HSP 1 Score: 483 bits (1244), Expect = 1.36e-171
Identity = 245/259 (94.59%), Postives = 253/259 (97.68%), Query Frame = 0


Query: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP T+T YSPSPT HKTRPP+FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPATST-YSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLIDP LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAATISEE 259
           LV IMRSCLKESAAT+SEE
Sbjct: 241 LVTIMRSCLKESAATVSEE 258

[Close]

BLAST of IVF0012183 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 379.8 bits (974), Expect = 1.8e-105
Identity = 185/249 (74.30%), Postives = 218/249 (87.55%), Query Frame = 0


Query: 10  TTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNT 69
           T TYSP   V ++R P+F+  D++W RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNT
Sbjct: 9   TPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNT 68

Query: 70  KVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKSLEGAII 129
           KVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++KE+SSMLHK+LEG I+
Sbjct: 69  KVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIM 128

Query: 130 LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID 189
           +ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+ID
Sbjct: 129 METFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMID 188

Query: 190 PILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 249
           P+ EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL EIMR CL
Sbjct: 189 PVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCL 248

Query: 250 KESAATISE 259
           K+SA+   E
Sbjct: 249 KQSASASDE 256

[Close]

BLAST of IVF0012183 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-21
Identity = 68/223 (30.49%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 35  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 94
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 95  LNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGG 154
           + C  S   FST  R +      + E S ++ +++E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 155 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS 214
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 215 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKES 253
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]

BLAST of IVF0012183 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-21
Identity = 68/223 (30.49%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 35  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 94
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 95  LNCSVSYTTFSTPVRGQ---GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGG 154
           + C  S   FST  R +      + E S ++ +++E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 155 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMITCMPS 214
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 215 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKES 253
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]

BLAST of IVF0012183 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-12
Identity = 51/163 (31.29%), Postives = 77/163 (47.24%), Query Frame = 0


Query: 36  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 95
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 96  SVSYTTFSTPVRGQ-GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPV 155
              +     P  GQ G   KE+  +L ++++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 156 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE 196
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

[Close]

BLAST of IVF0012183 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-12
Identity = 51/163 (31.29%), Postives = 77/163 (47.24%), Query Frame = 0


Query: 36  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 95
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 96  SVSYTTFSTPVRGQ-GSENKEFSSMLHKSLEGAIILETFPKTTVDVFALVLESGGSDLPV 155
              +     P  GQ G   KE+  +L ++++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 156 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPILEEE 196
            I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

The following BLAST results are available for this feature:

BLAST of IVF0012183 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	2.5e-104	74.30	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q6P0I8	2.8e-31	37.84	Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2	[more]
Q8U0L9	9.9e-29	34.02	Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM ...	[more]
O59223	1.7e-28	33.61	Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / D...	[more]
B6YSI2	2.9e-28	33.20	Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=52385...	[more]

BLAST of IVF0012183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKF3	2.6e-141	100.00	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]
A0A0A0KEK6	3.3e-136	97.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]
A0A6J1JDA9	2.0e-133	94.59	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1FYV1	2.0e-133	94.59	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1CHT0	1.4e-131	93.05	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of IVF0012183 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463959.1	6.05e-182	100.00	PREDICTED: exosome complex component RRP41-like [Cucumis melo]	[more]
XP_004145749.1	2.98e-175	97.30	exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical ...	[more]
XP_038900607.1	4.73e-172	95.37	exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_03890060...	[more]
KAG6570792.1	1.36e-171	94.59	Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su...	[more]
XP_022986160.1	1.36e-171	94.59	exosome complex component RRP41-like [Cucurbita maxima]	[more]

BLAST of IVF0012183 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27490.1	1.8e-105	74.30	3'-5'-exoribonuclease family protein	[more]
AT3G61620.1	2.7e-21	30.49	3'-5'-exoribonuclease family protein	[more]
AT3G61620.2	2.7e-21	30.49	3'-5'-exoribonuclease family protein	[more]
AT3G46210.1	8.7e-12	31.29	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	8.7e-12	31.29	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 172..232 e-value: 1.3E-6 score: 28.3
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 44..168 e-value: 2.1E-29 score: 102.7
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 32..257 e-value: 4.7E-61 score: 208.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 9..253
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 9..253
None	No IPR available	CDD	cd11371	RNase_PH_MTR3	coord: 45..251 e-value: 2.86116E-103 score: 296.784
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 170..257
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 33..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0012183.1	IVF0012183.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0009845	seed germination
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0016740	transferase activity