IVF0011960 (gene) Melon (IVF77) v1

Overview


Name	IVF0011960
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Defensin-like protein
Location	chr05: 20113140 .. 20113493 (+)
RNA-Seq Expression	IVF0011960
Synteny	IVF0011960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCAGTGGTTGGAAACAAGAACATATGCAGCGAAGGGTTAGGACCATGTGGAACCAACTGCGATGCAAGGTGCAAAGCGAAGCATAGCCCTATAGAGAACCCTCAGGGCAGATGTGATCAAATCGGGAGCAACTTATCGTTGTGTTATTGCCTTTACACTTGTGGCATTCCGACGCTGAAGCCGAACCCACCACAAAACTGCATCTCCGGATTAGGGTTGTGCACTGGACAATGCAAGAGCGATTGTTGTAATGCTAAATGTAGGAGTCAGTACAAAGGAGGGGAGGGGTATTGTGACACAAACGTTGGAGTTCCTTTGTGCCAATGCACCCATCCTTGCGCTAGTTAA

mRNA sequence

ATGACTCCAGTGGTTGGAAACAAGAACATATGCAGCGAAGGGTTAGGACCATGTGGAACCAACTGCGATGCAAGGTGCAAAGCGAAGCATAGCCCTATAGAGAACCCTCAGGGCAGATGTGATCAAATCGGGAGCAACTTATCGTTGTGTTATTGCCTTTACACTTGTGGCATTCCGACGCTGAAGCCGAACCCACCACAAAACTGCATCTCCGGATTAGGGTTGTGCACTGGACAATGCAAGAGCGATTGTTGTAATGCTAAATGTAGGAGTCAGTACAAAGGAGGGGAGGGGTATTGTGACACAAACGTTGGAGTTCCTTTGTGCCAATGCACCCATCCTTGCGCTAGTTAA

Coding sequence (CDS)

ATGACTCCAGTGGTTGGAAACAAGAACATATGCAGCGAAGGGTTAGGACCATGTGGAACCAACTGCGATGCAAGGTGCAAAGCGAAGCATAGCCCTATAGAGAACCCTCAGGGCAGATGTGATCAAATCGGGAGCAACTTATCGTTGTGTTATTGCCTTTACACTTGTGGCATTCCGACGCTGAAGCCGAACCCACCACAAAACTGCATCTCCGGATTAGGGTTGTGCACTGGACAATGCAAGAGCGATTGTTGTAATGCTAAATGTAGGAGTCAGTACAAAGGAGGGGAGGGGTATTGTGACACAAACGTTGGAGTTCCTTTGTGCCAATGCACCCATCCTTGCGCTAGTTAA

Protein sequence

MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPTLKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS

Homology

[Close]

BLAST of IVF0011960 vs. ExPASy Swiss-Prot
Match: P82773 (Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 11  CSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPTLKPNPPQNCI 70
           C +GLG C  NCD RCKAKH P  + +  CD+    + LC C Y C  P   P PP+ C 
Sbjct: 29  CIDGLGYC-NNCDERCKAKHGP--SSESSCDR-SVGVPLCKCYYECESPPSPPAPPKKCD 88

Query: 71  SGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 116
            G G+C+ +C+  CC+  C  +Y GG G+C+T      CQC +PC
Sbjct: 89  GGAGICSQRCQGQCCDMNCAQKYIGGHGFCNTLGTFSFCQCEYPC 129

[Close]

BLAST of IVF0011960 vs. ExPASy Swiss-Prot
Match: P82789 (Defensin-like protein 181 OS=Arabidopsis thaliana OX=3702 GN=PDF3.1 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-17
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 9   NICSEGLGPCGTNCDARCKAKHSPIENPQGRCD-QIGSNLSLCYCLYTCGIPTLKPNPPQ 68
           +IC++ LG C   CD RCKAKH P  + + +CD  +G  + LC C Y CG       P +
Sbjct: 27  SICNDRLGLC-DGCDQRCKAKHGP--SCESKCDGPVG--MLLCTCTYECG-------PTK 86

Query: 69  NCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 116
            C  GLG C   C   CC+  C  +Y GG GYC+T     LC C +PC
Sbjct: 87  LCNGGLGNCGESCNEQCCDRNCAQRYNGGHGYCNTLDDFSLCLCKYPC 122

[Close]

BLAST of IVF0011960 vs. ExPASy TrEMBL
Match: A0A5D3CNI5 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18312G00010 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 4.6e-69
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS 118
           LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS
Sbjct: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS 117

[Close]

BLAST of IVF0011960 vs. ExPASy TrEMBL
Match: A0A5A7SMA4 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00230 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.0e-65
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQG CDQIGSNLSLCYCLYTCGIPT
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGSCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 116
            KPNPPQNCISGLGLCTGQCKSDCCNAKCR QY+GGEGYCDTNVGVPLCQC+HPC
Sbjct: 61  PKPNPPQNCISGLGLCTGQCKSDCCNAKCRRQYQGGEGYCDTNVGVPLCQCSHPC 115

[Close]

BLAST of IVF0011960 vs. ExPASy TrEMBL
Match: A0A0A0LMG4 (Defensin-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G060470 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNK+IC+EGLGPCGTNCDARCKA+HSP ENPQG CDQIGS++SLC CLY+C   T
Sbjct: 1   MTPVVGNKDICTEGLGPCGTNCDARCKAQHSPNENPQGSCDQIGSSISLCNCLYSCDRST 60

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 116
             P PP NCISGLGLCT QCKSDCCNAKC  QYKGGEG+CDTNVGV LCQC+HPC
Sbjct: 61  PMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHPC 115

[Close]

BLAST of IVF0011960 vs. ExPASy TrEMBL
Match: A0A067FEG8 (Defensin-like protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041978mg PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 11  CSEGLGPCG--TNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPTLKPNPPQN 70
           C EGLG CG   +CD  CK +H+     QG CD+      LC C Y CG P+ +P+ P+ 
Sbjct: 21  CQEGLGQCGASNDCDLHCKTRHA--GQGQGSCDRT-IQPPLCTCFYPCGSPSKRPSSPKK 80

Query: 71  CISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVP-LCQCTHPC 116
           C +GLG C  QC+  CCN KC +Q+KGG+G+CD N+G   LCQCT+ C
Sbjct: 81  CTAGLGAC-DQCRDLCCNGKCAAQFKGGQGFCD-NIGAQYLCQCTYDC 123

[Close]

BLAST of IVF0011960 vs. ExPASy TrEMBL
Match: V4U112 (Defensin-like protein OS=Citrus clementina OX=85681 GN=CICLE_v10010365mg PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 11  CSEGLGPCG--TNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPTLKPNPPQN 70
           C EGLG CG   +CD +CK +H+     QG CD+      LC C Y CG P+ +P  P+ 
Sbjct: 28  CQEGLGQCGASNDCDLQCKTRHA--GQGQGSCDRT-IQPPLCTCFYPCGSPSKRPPSPKK 87

Query: 71  CISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVP-LCQCTHPC 116
           C +GLG C  QC+  CCN KC +Q+KGG+G+CD N+G   LCQCT+ C
Sbjct: 88  CTAGLGAC-DQCRDLCCNGKCAAQFKGGQGFCD-NIGAQYLCQCTYDC 130

[Close]

BLAST of IVF0011960 vs. NCBI nr
Match: TYK13447.1 (defensin-like protein 182 [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 1.42e-90
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS 117
           LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS
Sbjct: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPCAS 117

[Close]

BLAST of IVF0011960 vs. NCBI nr
Match: KAA0031758.1 (defensin-like protein 182 [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (648), Expect = 2.05e-85
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQG CDQIGSNLSLCYCLYTCGIPT
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGSCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115
            KPNPPQNCISGLGLCTGQCKSDCCNAKCR QY+GGEGYCDTNVGVPLCQC+HPC
Sbjct: 61  PKPNPPQNCISGLGLCTGQCKSDCCNAKCRRQYQGGEGYCDTNVGVPLCQCSHPC 115

[Close]

BLAST of IVF0011960 vs. NCBI nr
Match: XP_004148336.2 (defensin-like protein 182 [Cucumis sativus] >XP_031736571.1 defensin-like protein 182 [Cucumis sativus])

HSP 1 Score: 215 bits (548), Expect = 6.25e-70
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNK+IC+EGLGPCGTNCDARCKA+HSP ENPQG CDQIGS++SLC CLY+C   T
Sbjct: 17  MTPVVGNKDICTEGLGPCGTNCDARCKAQHSPNENPQGSCDQIGSSISLCNCLYSCDRST 76

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115
             P PP NCISGLGLCT QCKSDCCNAKC  QYKGGEG+CDTNVGV LCQC+HPC
Sbjct: 77  PMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHPC 131

[Close]

BLAST of IVF0011960 vs. NCBI nr
Match: KAE8651676.1 (hypothetical protein Csa_021158 [Cucumis sativus])

HSP 1 Score: 215 bits (548), Expect = 7.13e-70
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60
           MTPVVGNK+IC+EGLGPCGTNCDARCKA+HSP ENPQG CDQIGS++SLC CLY+C   T
Sbjct: 21  MTPVVGNKDICTEGLGPCGTNCDARCKAQHSPNENPQGSCDQIGSSISLCNCLYSCDRST 80

Query: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115
             P PP NCISGLGLCT QCKSDCCNAKC  QYKGGEG+CDTNVGV LCQC+HPC
Sbjct: 81  PMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHPC 135

[Close]

BLAST of IVF0011960 vs. NCBI nr
Match: KAG7020813.1 (Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150 bits (380), Expect = 1.50e-44
Identity = 63/113 (55.75%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 3   PVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPTLK 62
           P V + ++C+EGLG CG++CD RCKA+H P ENPQGRC+++G N +LC CLY+C    + 
Sbjct: 7   PEVKSDDLCAEGLGECGSDCDQRCKARHIPAENPQGRCNRLG-NEALCECLYSC---RMT 66

Query: 63  PNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115
           P P + C  GLG C+ +C +DCC+AKC S++ GG+GYCDTNVG+ LCQC++PC
Sbjct: 67  PPPGKVCQDGLGQCSAKCNNDCCSAKCASKHNGGQGYCDTNVGIRLCQCSYPC 115

[Close]

BLAST of IVF0011960 vs. TAIR 10
Match: AT4G30070.1 (low-molecular-weight cysteine-rich 59 )

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 11  CSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPTLKPNPPQNCI 70
           C +GLG C  NCD RCKAKH P  + +  CD+    + LC C Y C  P   P PP+ C 
Sbjct: 29  CIDGLGYC-NNCDERCKAKHGP--SSESSCDR-SVGVPLCKCYYECESPPSPPAPPKKCD 88

Query: 71  SGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 116
            G G+C+ +C+  CC+  C  +Y GG G+C+T      CQC +PC
Sbjct: 89  GGAGICSQRCQGQCCDMNCAQKYIGGHGFCNTLGTFSFCQCEYPC 129

[Close]

BLAST of IVF0011960 vs. TAIR 10
Match: AT5G38330.1 (low-molecular-weight cysteine-rich 80 )

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 9   NICSEGLGPCGTNCDARCKAKHSPIENPQGRCD-QIGSNLSLCYCLYTCGIPTLKPNPPQ 68
           +IC++ LG C   CD RCKAKH P  + + +CD  +G  + LC C Y CG       P +
Sbjct: 27  SICNDRLGLC-DGCDQRCKAKHGP--SCESKCDGPVG--MLLCTCTYECG-------PTK 86

Query: 69  NCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 116
            C  GLG C   C   CC+  C  +Y GG GYC+T     LC C +PC
Sbjct: 87  LCNGGLGNCGESCNEQCCDRNCAQRYNGGHGYCNTLDDFSLCLCKYPC 122

The following BLAST results are available for this feature:

BLAST of IVF0011960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82773	1.5e-21	42.86	Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1	[more]
P82789	3.9e-17	41.67	Defensin-like protein 181 OS=Arabidopsis thaliana OX=3702 GN=PDF3.1 PE=2 SV=2	[more]

BLAST of IVF0011960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNI5	4.6e-69	100.00	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]
A0A5A7SMA4	4.0e-65	95.65	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A0A0LMG4	1.6e-53	80.87	Defensin-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G060470 PE=3 SV=1	[more]
A0A067FEG8	8.0e-21	48.15	Defensin-like protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041978mg ...	[more]
V4U112	1.4e-20	48.15	Defensin-like protein OS=Citrus clementina OX=85681 GN=CICLE_v10010365mg PE=3 SV...	[more]

BLAST of IVF0011960 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13447.1	1.42e-90	100.00	defensin-like protein 182 [Cucumis melo var. makuwa]	[more]
KAA0031758.1	2.05e-85	95.65	defensin-like protein 182 [Cucumis melo var. makuwa]	[more]
XP_004148336.2	6.25e-70	80.87	defensin-like protein 182 [Cucumis sativus] >XP_031736571.1 defensin-like protei...	[more]
KAE8651676.1	7.13e-70	80.87	hypothetical protein Csa_021158 [Cucumis sativus]	[more]
KAG7020813.1	1.50e-44	55.75	Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of IVF0011960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30070.1	1.1e-22	42.86	low-molecular-weight cysteine-rich 59	[more]
AT5G38330.1	2.8e-18	41.67	low-molecular-weight cysteine-rich 80	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039641	Low-molecular-weight cysteine-rich protein	PANTHER	PTHR36788	DEFENSIN-LIKE PROTEIN 183	coord: 7..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011960.1	IVF0011960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
cellular_component	GO:0005576	extracellular region