|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATTAAGGGTCCAAAATTAACATTTGTTAGGAAACAATTAAAACTCAACTCAAACTTACAAAAAAAATGGTAAGAAGCAAAAAATAAGCTTGGTGGCTCAAATGGCTTGGCTAGGAAGAAGAACTGGCTAAGTGACTCGGCTTGGCTAGGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG mRNA sequence ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG Coding sequence (CDS) ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG Protein sequence MIKGPKLTFEADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGGSGVGCAVRWLTTGRAIAAAAA
Homology
BLAST of IVF0011922 vs. ExPASy TrEMBL
Match: A0A5A7V8Y5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005210 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 5.0e-60 Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 Query: 10 EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69 EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298
Query: 70 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129 TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358
Query: 130 S 131 S Sbjct: 359 S 359
BLAST of IVF0011922 vs. NCBI nr
Match: KAA0062151.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 239 bits (609), Expect = 2.00e-75 Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 Query: 10 EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69 EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298
Query: 70 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129 TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V8Y5 | 5.0e-60 | 94.21 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0062151.1 | 2.00e-75 | 94.21 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
|